Wall clock time and date at job start Tue Mar 31 2020 12:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38383 * 119.85191 * 2 1 4 4 C 1.37942 * 120.14200 * 179.76290 * 3 2 1 5 5 C 1.39599 * 119.85278 * 0.53086 * 4 3 2 6 6 C 1.47842 * 120.14409 * 179.74775 * 5 4 3 7 7 O 1.21547 * 120.00076 * 173.98960 * 6 5 4 8 8 N 1.34774 * 119.99778 * 353.98683 * 6 5 4 9 9 C 1.46508 * 119.99750 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46871 * 180.02562 * 9 8 6 11 11 H 1.08995 * 109.68096 * 59.17701 * 10 9 8 12 12 C 1.53295 * 109.70999 * 179.71522 * 10 9 8 13 13 O 1.42959 * 109.22531 * 172.04385 * 12 10 9 14 14 C 1.42962 * 114.16466 * 297.42016 * 13 12 10 15 15 C 1.52879 * 109.29826 * 62.44552 * 14 13 12 16 16 N 1.47146 * 109.68211 * 298.65853 * 10 9 8 17 17 C 1.36938 * 120.98201 * 9.68116 * 16 10 9 18 18 H 1.08001 * 120.00527 * 328.77130 * 17 16 10 19 19 C 1.38812 * 119.99974 * 148.76714 * 17 16 10 20 20 N 1.31625 * 120.00086 * 350.45768 * 19 17 16 21 21 Si 1.86798 * 120.00465 * 170.45130 * 19 17 16 22 22 H 1.48496 * 109.47850 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47050 * 300.00630 * 21 19 17 24 24 H 1.48500 * 109.46926 * 59.99783 * 21 19 17 25 25 C 1.39552 * 119.70841 * 359.46962 * 5 4 3 26 26 C 1.50706 * 120.07340 * 180.27640 * 25 5 4 27 27 C 1.37983 * 119.85742 * 0.25072 * 25 5 4 28 28 H 1.09002 * 109.47379 * 269.98179 * 1 2 3 29 29 H 1.09000 * 109.47164 * 29.98215 * 1 2 3 30 30 H 1.08998 * 109.47155 * 149.97774 * 1 2 3 31 31 H 1.08000 * 119.92898 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.07458 * 180.27464 * 4 3 2 33 33 H 0.97004 * 120.00608 * 0.02562 * 8 6 5 34 34 H 1.08996 * 109.47008 * 60.00414 * 9 8 6 35 35 H 1.08993 * 109.46904 * 300.00136 * 9 8 6 36 36 H 1.09002 * 109.51085 * 291.96935 * 12 10 9 37 37 H 1.09005 * 109.51526 * 52.06619 * 12 10 9 38 38 H 1.08997 * 109.51491 * 182.50044 * 14 13 12 39 39 H 1.08998 * 109.51077 * 302.65360 * 14 13 12 40 40 H 1.09002 * 109.61962 * 188.11479 * 15 14 13 41 41 H 1.09005 * 109.52701 * 67.69991 * 15 14 13 42 42 H 0.96997 * 120.00324 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.46962 * 82.82559 * 26 25 5 44 44 H 1.08993 * 109.47308 * 202.83091 * 26 25 5 45 45 H 1.09001 * 109.46815 * 322.83480 * 26 25 5 46 46 H 1.07995 * 119.92980 * 179.97438 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2002 0.0000 4 6 3.5752 1.2072 0.0049 5 6 4.2762 0.0000 -0.0013 6 6 5.7547 0.0000 -0.0017 7 8 6.3625 -1.0473 0.1032 8 7 6.4285 1.1614 -0.1183 9 6 7.8935 1.1615 -0.1181 10 6 8.4034 2.5969 -0.2617 11 1 8.0299 3.2034 0.5633 12 6 9.9364 2.6041 -0.2550 13 8 10.4023 3.9174 -0.5742 14 6 10.0314 4.3690 -1.8789 15 6 8.5076 4.4494 -1.9715 16 7 7.9423 3.1611 -1.5401 17 6 7.0187 2.5040 -2.3083 18 1 6.9803 1.4246 -2.3017 19 6 6.1315 3.2250 -3.0957 20 7 6.0486 4.5322 -2.9655 21 14 5.0554 2.3404 -4.3401 22 1 4.2031 3.3286 -5.0488 23 1 5.9146 1.6331 -5.3234 24 1 4.1934 1.3560 -3.6379 25 6 3.5754 -1.2067 -0.0012 26 6 4.3239 -2.5148 -0.0016 27 6 2.1956 -1.1998 -0.0003 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8901 -0.5136 30 1 -0.3633 -0.8898 -0.5142 31 1 1.6523 2.1335 0.0004 32 1 4.1117 2.1445 0.0094 33 1 5.9435 1.9974 -0.2017 34 1 8.2570 0.5613 -0.9523 35 1 8.2567 0.7392 0.8187 36 1 10.2975 2.3199 0.7334 37 1 10.3071 1.8954 -0.9957 38 1 10.4608 5.3545 -2.0589 39 1 10.4024 3.6674 -2.6261 40 1 8.2137 4.6528 -3.0013 41 1 8.1446 5.2456 -1.3215 42 1 5.4285 5.0360 -3.5154 43 1 4.6160 -2.7665 1.0179 44 1 3.6823 -3.3005 -0.4003 45 1 5.2150 -2.4232 -0.6227 46 1 1.6520 -2.1330 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051229622.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:07 Heat of formation + Delta-G solvation = -47.908750 kcal Electronic energy + Delta-G solvation = -27835.856218 eV Core-core repulsion = 24111.433107 eV Total energy + Delta-G solvation = -3724.423110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41240 -40.23229 -39.31898 -36.99737 -35.42924 -34.26277 -33.71323 -32.75149 -32.00813 -29.12283 -28.53871 -28.09980 -26.56345 -25.25042 -23.67518 -23.42817 -22.09507 -21.45726 -21.00217 -19.07678 -18.14776 -17.63024 -17.39684 -16.75966 -16.30149 -16.20632 -16.01803 -15.92815 -15.74988 -15.57241 -15.30540 -14.89752 -14.68294 -14.50048 -14.12133 -14.09937 -13.93449 -13.49789 -13.34658 -13.08353 -12.91105 -12.77957 -12.75132 -12.59316 -12.52210 -12.48896 -12.17845 -12.02053 -11.93581 -11.86273 -11.31519 -10.79543 -10.59324 -10.50719 -9.96784 -9.78142 -9.50307 -8.62705 -7.88979 -5.39913 -0.11175 0.38753 1.39018 1.42187 1.46760 1.90256 2.31334 2.43962 2.85301 3.02541 3.27340 3.42844 3.75898 3.80267 3.89916 3.99390 4.02752 4.20441 4.30608 4.35529 4.40046 4.47269 4.58461 4.63110 4.64738 4.65375 4.73279 4.73803 4.81640 4.85200 4.86512 4.99371 5.02811 5.10460 5.16860 5.28248 5.29962 5.33868 5.55791 5.57143 5.61706 5.64995 5.68081 5.98401 6.28609 6.36361 6.66742 7.09984 7.28954 7.74853 8.30836 9.15136 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013891 B = 0.004777 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.244383 B = 5859.734027 C = 6988.531298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.146 4.146 4 C -0.083 4.083 5 C -0.167 4.167 6 C 0.547 3.453 7 O -0.575 6.575 8 N -0.694 5.694 9 C 0.142 3.858 10 C 0.126 3.874 11 H 0.037 0.963 12 C 0.058 3.942 13 O -0.397 6.397 14 C 0.046 3.954 15 C 0.149 3.851 16 N -0.605 5.605 17 C -0.241 4.241 18 H 0.064 0.936 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 0.938 3.062 22 H -0.291 1.291 23 H -0.288 1.288 24 H -0.280 1.280 25 C -0.038 4.038 26 C -0.111 4.111 27 C -0.137 4.137 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.409 0.591 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.105 0.895 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.007 0.993 42 H 0.251 0.749 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.380 -7.146 6.871 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.163 4.163 4 C -0.102 4.102 5 C -0.170 4.170 6 C 0.336 3.664 7 O -0.458 6.458 8 N -0.344 5.344 9 C 0.018 3.982 10 C 0.019 3.981 11 H 0.054 0.946 12 C -0.020 4.020 13 O -0.315 6.315 14 C -0.032 4.032 15 C 0.024 3.976 16 N -0.331 5.331 17 C -0.371 4.371 18 H 0.082 0.918 19 C -0.223 4.223 20 N -0.569 5.569 21 Si 0.767 3.233 22 H -0.217 1.217 23 H -0.215 1.215 24 H -0.207 1.207 25 C -0.039 4.039 26 C -0.167 4.167 27 C -0.155 4.155 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.247 0.753 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.025 0.975 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.923 -7.617 6.978 11.908 hybrid contribution -0.753 0.399 -1.276 1.534 sum -6.676 -7.218 5.702 11.366 Atomic orbital electron populations 1.20912 0.88196 1.04078 1.03786 1.20522 0.98154 0.92348 0.94839 1.21249 0.93210 0.99312 1.02567 1.21444 0.95642 0.96752 0.96314 1.19885 0.92398 0.95059 1.09657 1.18541 0.87894 0.83532 0.76415 1.90625 1.70740 1.31479 1.52956 1.45981 1.07569 1.09392 1.71442 1.21141 0.79841 0.96127 1.01072 1.21561 0.94821 0.92676 0.89003 0.94552 1.22977 0.92874 0.84282 1.01913 1.87807 1.76205 1.33141 1.34367 1.23149 0.96339 0.99813 0.83882 1.21168 0.89999 0.86748 0.99724 1.44262 1.47597 1.22418 1.18797 1.19161 1.07885 0.90405 1.19609 0.91838 1.25524 0.98597 0.96028 1.02144 1.70068 1.39067 1.05950 1.41792 0.85801 0.79404 0.77870 0.80201 1.21687 1.21484 1.20650 1.20273 0.94537 0.94559 0.94541 1.20954 1.00113 0.92565 1.03054 1.21209 0.92272 0.99214 1.02815 0.89215 0.90660 0.89894 0.83875 0.86248 0.75334 0.93050 0.90022 0.86382 0.93231 0.87676 0.93917 0.91479 0.97518 0.93988 0.90897 0.90158 0.91371 0.82665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.06 -1.38 5.89 -19.81 -0.12 -1.50 16 3 C -0.15 -4.03 9.68 22.23 0.22 -3.81 16 4 C -0.08 -2.77 9.53 22.53 0.21 -2.56 16 5 C -0.17 -5.99 5.87 -20.09 -0.12 -6.11 16 6 C 0.55 21.70 7.71 86.79 0.67 22.37 16 7 O -0.57 -24.27 13.35 -3.86 -0.05 -24.33 16 8 N -0.69 -27.23 3.76 -465.97 -1.75 -28.98 16 9 C 0.14 5.26 4.44 86.38 0.38 5.65 16 10 C 0.13 4.83 3.20 44.97 0.14 4.97 16 11 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 12 C 0.06 1.93 6.29 72.08 0.45 2.38 16 13 O -0.40 -14.58 10.74 -148.98 -1.60 -16.18 16 14 C 0.05 1.71 6.97 71.94 0.50 2.21 16 15 C 0.15 6.80 5.35 86.22 0.46 7.26 16 16 N -0.60 -27.89 3.04 -674.53 -2.05 -29.94 16 17 C -0.24 -12.06 7.11 84.03 0.60 -11.46 16 18 H 0.06 3.29 5.82 -2.91 -0.02 3.28 16 19 C -0.03 -1.35 5.08 84.86 0.43 -0.92 16 20 N -0.92 -50.34 11.09 21.65 0.24 -50.10 16 21 Si 0.94 43.90 29.56 68.60 2.03 45.93 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 C -0.04 -1.18 5.91 -19.61 -0.12 -1.30 16 26 C -0.11 -3.19 8.72 71.24 0.62 -2.57 16 27 C -0.14 -3.40 9.31 22.23 0.21 -3.20 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 30 H 0.08 1.03 8.08 -2.39 -0.02 1.01 16 31 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.12 4.17 6.45 -2.91 -0.02 4.15 16 33 H 0.41 16.86 5.46 -92.71 -0.51 16.35 16 34 H 0.05 2.08 7.52 -2.39 -0.02 2.06 16 35 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 36 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.07 3.41 6.31 -2.39 -0.02 3.40 16 41 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 42 H 0.25 13.50 8.31 -92.71 -0.77 12.72 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 45 H 0.07 2.38 5.88 -2.39 -0.01 2.37 16 46 H 0.16 2.78 8.05 -2.91 -0.02 2.76 16 Total: -1.00 -62.69 363.25 2.56 -60.13 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.48 Total: 33.09 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.26 Total: 10.40 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -3.56 Total: -109.03 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -1.65 Total: -40.51 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -62.69 2.56 -60.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051229622.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.218 kcal (2) G-P(sol) polarization free energy of solvation -62.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds