Wall clock time and date at job start Tue Mar 31 2020 12:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38383 * 119.92707 * 2 1 4 4 C 1.38344 * 120.29115 * 179.97438 * 3 2 1 5 5 C 1.37984 * 120.14172 * 359.78707 * 4 3 2 6 6 C 1.39549 * 119.85284 * 0.48855 * 5 4 3 7 7 C 1.47853 * 120.14305 * 179.76586 * 6 5 4 8 8 O 1.21550 * 120.00064 * 173.62007 * 7 6 5 9 9 N 1.34773 * 119.99788 * 353.61764 * 7 6 5 10 10 C 1.46503 * 119.99816 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47045 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.67837 * 298.63820 * 11 10 9 13 13 C 1.53289 * 109.71172 * 178.10285 * 11 10 9 14 14 O 1.42962 * 109.22310 * 187.95668 * 13 11 10 15 15 C 1.42967 * 114.16606 * 62.57969 * 14 13 11 16 16 C 1.53712 * 109.14555 * 297.28723 * 15 14 13 17 17 N 1.47146 * 109.68325 * 59.15550 * 11 10 9 18 18 C 1.36940 * 120.98107 * 350.27002 * 17 11 10 19 19 H 1.08002 * 119.99940 * 31.86509 * 18 17 11 20 20 C 1.38816 * 120.00215 * 211.85950 * 18 17 11 21 21 N 1.31620 * 119.99716 * 10.79259 * 20 18 17 22 22 Si 1.86800 * 119.99938 * 190.79475 * 20 18 17 23 23 H 1.48500 * 109.46674 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47219 * 300.00272 * 22 20 18 25 25 H 1.48500 * 109.47129 * 60.00380 * 22 20 18 26 26 C 1.37937 * 119.92831 * 180.02562 * 2 1 3 27 27 C 1.50701 * 120.07003 * 359.97438 * 26 2 1 28 28 H 1.08995 * 109.47657 * 269.97888 * 1 2 3 29 29 H 1.09006 * 109.46988 * 29.97983 * 1 2 3 30 30 H 1.09002 * 109.47376 * 149.97407 * 1 2 3 31 31 H 1.07996 * 119.85532 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.92820 * 180.02562 * 4 3 2 33 33 H 1.07999 * 120.06650 * 180.23095 * 5 4 3 34 34 H 0.97001 * 120.00334 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.46940 * 60.00461 * 10 9 7 36 36 H 1.08999 * 109.47463 * 299.99858 * 10 9 7 37 37 H 1.09000 * 109.51182 * 307.87476 * 13 11 10 38 38 H 1.09000 * 109.51804 * 67.98207 * 13 11 10 39 39 H 1.08996 * 109.51440 * 57.34763 * 15 14 13 40 40 H 1.09002 * 109.50952 * 177.49879 * 15 14 13 41 41 H 1.08998 * 109.83688 * 292.85985 * 16 15 14 42 42 H 1.09004 * 109.74662 * 172.16798 * 16 15 14 43 43 H 0.97003 * 119.99349 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47250 * 262.88312 * 27 26 2 45 45 H 1.09003 * 109.47197 * 22.89115 * 27 26 2 46 46 H 1.09005 * 109.46541 * 142.88764 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0193 0.0055 6 6 3.5910 -1.1936 -0.0003 7 6 4.3352 -2.4712 -0.0003 8 8 3.7366 -3.5232 0.1116 9 7 5.6772 -2.4694 -0.1244 10 6 6.4145 -3.7354 -0.1238 11 6 7.9107 -3.4542 -0.2766 12 1 8.0947 -2.9523 -1.2266 13 6 8.6920 -4.7722 -0.2292 14 8 10.0924 -4.4879 -0.1859 15 6 10.5072 -3.7647 0.9756 16 6 9.8185 -2.3905 0.9863 17 7 8.3706 -2.6019 0.8313 18 6 7.4771 -2.0180 1.6892 19 1 6.5481 -2.5168 1.9231 20 6 7.7654 -0.7852 2.2583 21 7 8.7859 -0.0798 1.8185 22 14 6.7051 -0.1273 3.6484 23 1 7.2184 1.1984 4.0776 24 1 5.3037 0.0137 3.1779 25 1 6.7500 -1.0707 4.7944 26 6 2.1951 -1.1954 -0.0005 27 6 1.4416 -2.5005 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6538 2.1325 0.0004 32 1 4.1136 2.1475 0.0009 33 1 5.3611 0.0276 0.0097 34 1 6.1549 -1.6299 -0.2134 35 1 6.0742 -4.3545 -0.9538 36 1 6.2377 -4.2584 0.8160 37 1 8.4066 -5.3327 0.6610 38 1 8.4667 -5.3612 -1.1182 39 1 10.2284 -4.3216 1.8701 40 1 11.5884 -3.6285 0.9527 41 1 10.1913 -1.7835 0.1614 42 1 10.0168 -1.8866 1.9324 43 1 8.9871 0.7818 2.2160 44 1 1.3705 -2.8791 1.0192 45 1 0.4398 -2.3417 -0.3999 46 1 1.9695 -3.2248 -0.6210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051236779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:22 Heat of formation + Delta-G solvation = -27.174564 kcal Electronic energy + Delta-G solvation = -27961.285577 eV Core-core repulsion = 24237.761568 eV Total energy + Delta-G solvation = -3723.524009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.09854 -38.73846 -37.91273 -35.40170 -33.81811 -33.14161 -31.98121 -31.39533 -30.42228 -27.75848 -27.14883 -26.30119 -25.41130 -23.48086 -22.98810 -21.64930 -20.65909 -19.77562 -19.53692 -17.35491 -16.45938 -16.02639 -15.86100 -15.43150 -15.36785 -14.81305 -14.65511 -14.49545 -14.14125 -14.09708 -13.78121 -13.58464 -13.20032 -12.89957 -12.80065 -12.68197 -12.51256 -12.31207 -11.88514 -11.69844 -11.58672 -11.53456 -11.43694 -11.05188 -10.88964 -10.78225 -10.65795 -10.44208 -10.28704 -10.08609 -9.68656 -9.23824 -8.94124 -8.74036 -8.65072 -8.39361 -8.18353 -6.75880 -5.95022 -3.45353 1.14331 1.54298 3.26733 3.29670 3.33380 3.38050 3.77631 4.12891 4.31798 4.51517 4.87233 4.97604 5.06597 5.13379 5.20546 5.22790 5.31651 5.43830 5.54846 5.58666 5.68842 5.74834 5.78997 5.85040 5.93138 5.99425 6.02757 6.07899 6.11039 6.13918 6.16488 6.22612 6.29775 6.46626 6.49946 6.56644 6.64580 6.73024 6.82648 7.04273 7.12242 7.12714 7.45562 7.67000 7.84466 8.21656 8.26358 8.81971 9.01884 9.61690 10.21475 11.10892 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004808 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.492740 B = 5821.836587 C = 7068.872983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.097 4.097 4 C -0.133 4.133 5 C -0.076 4.076 6 C -0.129 4.129 7 C 0.550 3.450 8 O -0.556 6.556 9 N -0.689 5.689 10 C 0.136 3.864 11 C 0.124 3.876 12 H 0.041 0.959 13 C 0.057 3.943 14 O -0.392 6.392 15 C 0.034 3.966 16 C 0.145 3.855 17 N -0.592 5.592 18 C -0.258 4.258 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.899 5.899 22 Si 0.890 3.110 23 H -0.289 1.289 24 H -0.275 1.275 25 H -0.283 1.283 26 C -0.029 4.029 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.136 0.864 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.257 0.743 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 -0.145 -4.648 10.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.109 4.109 3 C -0.116 4.116 4 C -0.151 4.151 5 C -0.095 4.095 6 C -0.132 4.132 7 C 0.338 3.662 8 O -0.438 6.438 9 N -0.340 5.340 10 C 0.012 3.988 11 C 0.017 3.983 12 H 0.059 0.941 13 C -0.023 4.023 14 O -0.311 6.311 15 C -0.044 4.044 16 C 0.019 3.981 17 N -0.317 5.317 18 C -0.387 4.387 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.542 5.542 22 Si 0.719 3.281 23 H -0.215 1.215 24 H -0.201 1.201 25 H -0.209 1.209 26 C -0.030 4.030 27 C -0.176 4.176 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.284 -0.767 -4.657 10.415 hybrid contribution -0.198 1.179 1.163 1.668 sum -9.482 0.412 -3.494 10.114 Atomic orbital electron populations 1.20816 0.91212 1.02645 1.02226 1.19673 0.96017 0.92450 1.02764 1.21137 0.94279 0.97269 0.98886 1.21064 0.94108 0.98181 1.01776 1.21534 1.00770 0.91662 0.95543 1.19867 0.93537 0.93502 1.06244 1.18192 0.82421 0.88421 0.77200 1.90645 1.68321 1.32973 1.51831 1.46018 1.05658 1.11117 1.71227 1.21167 0.90620 0.85787 1.01222 1.21442 0.91351 0.92587 0.92915 0.94111 1.22856 0.82260 0.96316 1.00827 1.87800 1.23096 1.75978 1.44214 1.23430 0.98535 0.95339 0.87055 1.21493 0.82846 0.91419 1.02305 1.44095 1.01843 1.56283 1.29509 1.19208 1.01217 0.98673 1.19587 0.90927 1.25129 0.98097 0.95735 0.99775 1.69972 1.29461 1.12818 1.41940 0.86555 0.80644 0.78115 0.82832 1.21470 1.20088 1.20927 1.19835 0.92134 0.95496 0.95529 1.21111 0.98480 0.94447 1.03546 0.91380 0.91844 0.91029 0.86104 0.85662 0.84662 0.74476 0.92195 0.91469 0.93493 0.89895 0.94082 0.90274 0.95187 0.89051 0.93332 0.90975 0.92531 0.88722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.58 36.00 0.35 -0.80 16 2 C -0.11 -1.50 5.87 -104.68 -0.61 -2.11 16 3 C -0.10 -1.29 9.69 -39.49 -0.38 -1.68 16 4 C -0.13 -1.97 10.03 -39.64 -0.40 -2.37 16 5 C -0.08 -1.31 9.52 -39.19 -0.37 -1.68 16 6 C -0.13 -2.30 5.87 -104.97 -0.62 -2.92 16 7 C 0.55 10.70 7.70 -12.33 -0.09 10.61 16 8 O -0.56 -11.53 13.36 5.32 0.07 -11.45 16 9 N -0.69 -13.27 3.67 -61.24 -0.22 -13.49 16 10 C 0.14 2.52 4.46 -4.04 -0.02 2.50 16 11 C 0.12 2.40 3.22 -67.43 -0.22 2.19 16 12 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 13 C 0.06 0.99 6.29 37.31 0.23 1.22 16 14 O -0.39 -7.56 10.74 -35.23 -0.38 -7.94 16 15 C 0.03 0.65 7.00 37.53 0.26 0.92 16 16 C 0.14 3.24 5.40 -3.32 -0.02 3.22 16 17 N -0.59 -13.41 3.02 -164.05 -0.50 -13.91 16 18 C -0.26 -6.27 6.93 -15.06 -0.10 -6.38 16 19 H 0.07 1.83 5.83 -52.49 -0.31 1.52 16 20 C 0.01 0.32 5.05 -17.43 -0.09 0.23 16 21 N -0.90 -23.63 11.17 55.49 0.62 -23.01 16 22 Si 0.89 20.66 29.57 -169.99 -5.03 15.64 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C -0.03 -0.46 5.91 -104.23 -0.62 -1.08 16 27 C -0.12 -1.76 8.41 36.01 0.30 -1.45 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.07 0.68 5.88 -51.93 -0.31 0.37 16 31 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.14 2.44 6.46 -52.49 -0.34 2.10 16 34 H 0.42 8.35 5.26 -40.82 -0.21 8.14 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.34 7.64 -51.93 -0.40 0.94 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.09 2.25 6.36 -51.93 -0.33 1.92 16 43 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.66 5.69 -51.93 -0.30 0.37 16 46 H 0.09 1.55 5.89 -51.93 -0.31 1.24 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -28.26 358.61 -9.13 -37.38 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -6.70 Total: 10.97 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -2.40 Total: 0.42 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: -0.10 Total: -50.41 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.31 Total: -19.39 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.26 -9.13 -37.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051236779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.206 kcal (2) G-P(sol) polarization free energy of solvation -28.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds