Wall clock time and date at job start Tue Mar 31 2020 12:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38383 * 119.92707 * 2 1 4 4 C 1.38344 * 120.29115 * 179.97438 * 3 2 1 5 5 C 1.37984 * 120.14172 * 359.78707 * 4 3 2 6 6 C 1.39549 * 119.85284 * 0.48855 * 5 4 3 7 7 C 1.47853 * 120.14305 * 179.76586 * 6 5 4 8 8 O 1.21550 * 120.00064 * 173.62007 * 7 6 5 9 9 N 1.34773 * 119.99788 * 353.61764 * 7 6 5 10 10 C 1.46503 * 119.99816 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.47045 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.67837 * 298.63820 * 11 10 9 13 13 C 1.53289 * 109.71172 * 178.10285 * 11 10 9 14 14 O 1.42962 * 109.22310 * 187.95668 * 13 11 10 15 15 C 1.42967 * 114.16606 * 62.57969 * 14 13 11 16 16 C 1.53712 * 109.14555 * 297.28723 * 15 14 13 17 17 N 1.47146 * 109.68325 * 59.15550 * 11 10 9 18 18 C 1.36940 * 120.98107 * 350.27002 * 17 11 10 19 19 H 1.08002 * 119.99940 * 31.86509 * 18 17 11 20 20 C 1.38816 * 120.00215 * 211.85950 * 18 17 11 21 21 N 1.31620 * 119.99716 * 10.79259 * 20 18 17 22 22 Si 1.86800 * 119.99938 * 190.79475 * 20 18 17 23 23 H 1.48500 * 109.46674 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47219 * 300.00272 * 22 20 18 25 25 H 1.48500 * 109.47129 * 60.00380 * 22 20 18 26 26 C 1.37937 * 119.92831 * 180.02562 * 2 1 3 27 27 C 1.50701 * 120.07003 * 359.97438 * 26 2 1 28 28 H 1.08995 * 109.47657 * 269.97888 * 1 2 3 29 29 H 1.09006 * 109.46988 * 29.97983 * 1 2 3 30 30 H 1.09002 * 109.47376 * 149.97407 * 1 2 3 31 31 H 1.07996 * 119.85532 * 0.02562 * 3 2 1 32 32 H 1.07997 * 119.92820 * 180.02562 * 4 3 2 33 33 H 1.07999 * 120.06650 * 180.23095 * 5 4 3 34 34 H 0.97001 * 120.00334 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.46940 * 60.00461 * 10 9 7 36 36 H 1.08999 * 109.47463 * 299.99858 * 10 9 7 37 37 H 1.09000 * 109.51182 * 307.87476 * 13 11 10 38 38 H 1.09000 * 109.51804 * 67.98207 * 13 11 10 39 39 H 1.08996 * 109.51440 * 57.34763 * 15 14 13 40 40 H 1.09002 * 109.50952 * 177.49879 * 15 14 13 41 41 H 1.08998 * 109.83688 * 292.85985 * 16 15 14 42 42 H 1.09004 * 109.74662 * 172.16798 * 16 15 14 43 43 H 0.97003 * 119.99349 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.47250 * 262.88312 * 27 26 2 45 45 H 1.09003 * 109.47197 * 22.89115 * 27 26 2 46 46 H 1.09005 * 109.46541 * 142.88764 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5807 1.2081 0.0005 5 6 4.2812 0.0193 0.0055 6 6 3.5910 -1.1936 -0.0003 7 6 4.3352 -2.4712 -0.0003 8 8 3.7366 -3.5232 0.1116 9 7 5.6772 -2.4694 -0.1244 10 6 6.4145 -3.7354 -0.1238 11 6 7.9107 -3.4542 -0.2766 12 1 8.0947 -2.9523 -1.2266 13 6 8.6920 -4.7722 -0.2292 14 8 10.0924 -4.4879 -0.1859 15 6 10.5072 -3.7647 0.9756 16 6 9.8185 -2.3905 0.9863 17 7 8.3706 -2.6019 0.8313 18 6 7.4771 -2.0180 1.6892 19 1 6.5481 -2.5168 1.9231 20 6 7.7654 -0.7852 2.2583 21 7 8.7859 -0.0798 1.8185 22 14 6.7051 -0.1273 3.6484 23 1 7.2184 1.1984 4.0776 24 1 5.3037 0.0137 3.1779 25 1 6.7500 -1.0707 4.7944 26 6 2.1951 -1.1954 -0.0005 27 6 1.4416 -2.5005 -0.0005 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5136 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6538 2.1325 0.0004 32 1 4.1136 2.1475 0.0009 33 1 5.3611 0.0276 0.0097 34 1 6.1549 -1.6299 -0.2134 35 1 6.0742 -4.3545 -0.9538 36 1 6.2377 -4.2584 0.8160 37 1 8.4066 -5.3327 0.6610 38 1 8.4667 -5.3612 -1.1182 39 1 10.2284 -4.3216 1.8701 40 1 11.5884 -3.6285 0.9527 41 1 10.1913 -1.7835 0.1614 42 1 10.0168 -1.8866 1.9324 43 1 8.9871 0.7818 2.2160 44 1 1.3705 -2.8791 1.0192 45 1 0.4398 -2.3417 -0.3999 46 1 1.9695 -3.2248 -0.6210 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051236779.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:21 Heat of formation + Delta-G solvation = -43.078566 kcal Electronic energy + Delta-G solvation = -27961.975226 eV Core-core repulsion = 24237.761568 eV Total energy + Delta-G solvation = -3724.213658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.45248 -40.23976 -39.32095 -37.00895 -35.43274 -34.42371 -33.33936 -32.91485 -32.06433 -29.13778 -28.68872 -27.36444 -26.87637 -25.25606 -24.33252 -23.20028 -21.87714 -21.38184 -20.99818 -18.93240 -18.02752 -17.62043 -17.41224 -16.76329 -16.59385 -16.31609 -16.24294 -16.01924 -15.64677 -15.53660 -15.28872 -14.86982 -14.82044 -14.45272 -14.15307 -13.90287 -13.66701 -13.47615 -13.32069 -13.10921 -12.94127 -12.84126 -12.73399 -12.67293 -12.56612 -12.45413 -12.18102 -12.02094 -11.87915 -11.74365 -11.31255 -10.80737 -10.59257 -10.48603 -10.02797 -9.65610 -9.52934 -8.62901 -7.89776 -5.40857 -0.09662 0.37250 1.38685 1.42244 1.46864 1.91564 2.30742 2.43633 2.84976 3.02575 3.26202 3.42601 3.78259 3.81828 3.92193 4.01069 4.09141 4.20166 4.24524 4.31569 4.40254 4.46418 4.56039 4.61950 4.64847 4.66579 4.71406 4.76706 4.80266 4.86111 4.96425 4.97320 4.99823 5.09838 5.18470 5.28467 5.33489 5.41846 5.47999 5.57872 5.63225 5.66242 5.68973 6.00435 6.28354 6.35758 6.66944 7.09028 7.28632 7.73842 8.30517 9.14059 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014776 B = 0.004808 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.492740 B = 5821.836587 C = 7068.872983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.089 4.089 4 C -0.139 4.139 5 C -0.096 4.096 6 C -0.155 4.155 7 C 0.546 3.454 8 O -0.575 6.575 9 N -0.693 5.693 10 C 0.142 3.858 11 C 0.125 3.875 12 H 0.036 0.964 13 C 0.059 3.941 14 O -0.397 6.397 15 C 0.046 3.954 16 C 0.150 3.850 17 N -0.605 5.605 18 C -0.243 4.243 19 H 0.064 0.936 20 C -0.023 4.023 21 N -0.922 5.922 22 Si 0.934 3.066 23 H -0.291 1.291 24 H -0.276 1.276 25 H -0.290 1.290 26 C -0.045 4.045 27 C -0.113 4.113 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.143 0.857 33 H 0.115 0.885 34 H 0.410 0.590 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.118 0.882 39 H 0.044 0.956 40 H 0.105 0.895 41 H 0.008 0.992 42 H 0.066 0.934 43 H 0.251 0.749 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 0.027 -5.169 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.107 4.107 4 C -0.157 4.157 5 C -0.115 4.115 6 C -0.158 4.158 7 C 0.335 3.665 8 O -0.458 6.458 9 N -0.343 5.343 10 C 0.018 3.982 11 C 0.019 3.981 12 H 0.053 0.947 13 C -0.020 4.020 14 O -0.315 6.315 15 C -0.032 4.032 16 C 0.024 3.976 17 N -0.331 5.331 18 C -0.373 4.373 19 H 0.082 0.918 20 C -0.221 4.221 21 N -0.567 5.567 22 Si 0.764 3.236 23 H -0.217 1.217 24 H -0.202 1.202 25 H -0.217 1.217 26 C -0.046 4.046 27 C -0.169 4.169 28 H 0.097 0.903 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.177 0.823 32 H 0.161 0.839 33 H 0.133 0.867 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.136 0.864 39 H 0.062 0.938 40 H 0.123 0.877 41 H 0.026 0.974 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.202 -0.618 -5.187 12.361 hybrid contribution 0.329 1.132 1.276 1.737 sum -10.873 0.513 -3.912 11.567 Atomic orbital electron populations 1.20906 0.88233 1.04260 1.03341 1.20138 0.98124 0.91583 1.00748 1.21582 0.93645 0.98773 0.96697 1.21354 0.95245 0.97890 1.01201 1.21466 0.99992 0.92675 0.97401 1.19896 0.94605 0.92761 1.08577 1.18550 0.82354 0.89062 0.76567 1.90625 1.68570 1.33784 1.52803 1.46055 1.05878 1.11019 1.71373 1.21146 0.90101 0.85729 1.01243 1.21566 0.92167 0.93004 0.91379 0.94662 1.22971 0.81070 0.95228 1.02707 1.87804 1.23966 1.75622 1.44134 1.23296 0.99617 0.92987 0.87300 1.21327 0.83121 0.93117 0.99996 1.44293 1.01899 1.56549 1.30374 1.19185 1.00806 0.98203 1.19104 0.91800 1.25511 0.98987 0.96186 1.01382 1.70074 1.30731 1.12930 1.43012 0.85857 0.79575 0.77293 0.80918 1.21668 1.20228 1.21659 1.20116 0.91504 0.97064 0.95913 1.21031 0.99787 0.93407 1.02679 0.90322 0.89454 0.90271 0.82298 0.83924 0.86705 0.75134 0.90004 0.93010 0.93221 0.86384 0.93811 0.87730 0.97391 0.91613 0.93910 0.91914 0.89316 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.58 71.23 0.68 -1.13 16 2 C -0.11 -2.62 5.87 -19.90 -0.12 -2.74 16 3 C -0.09 -2.09 9.69 22.33 0.22 -1.88 16 4 C -0.14 -3.94 10.03 22.23 0.22 -3.72 16 5 C -0.10 -3.37 9.52 22.53 0.21 -3.16 16 6 C -0.16 -5.66 5.87 -20.09 -0.12 -5.77 16 7 C 0.55 21.85 7.70 86.79 0.67 22.52 16 8 O -0.57 -24.36 13.36 -3.87 -0.05 -24.41 16 9 N -0.69 -27.51 3.67 -465.96 -1.71 -29.22 16 10 C 0.14 5.27 4.46 86.38 0.39 5.65 16 11 C 0.13 4.82 3.22 44.97 0.14 4.97 16 12 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 13 C 0.06 1.95 6.29 72.08 0.45 2.41 16 14 O -0.40 -14.57 10.74 -148.98 -1.60 -16.17 16 15 C 0.05 1.70 7.00 72.22 0.51 2.20 16 16 C 0.15 6.82 5.40 86.49 0.47 7.28 16 17 N -0.61 -27.87 3.02 -672.92 -2.03 -29.90 16 18 C -0.24 -12.12 6.93 84.03 0.58 -11.53 16 19 H 0.06 3.30 5.83 -2.91 -0.02 3.29 16 20 C -0.02 -1.21 5.05 84.86 0.43 -0.78 16 21 N -0.92 -49.97 11.17 21.65 0.24 -49.73 16 22 Si 0.93 43.46 29.57 68.60 2.03 45.49 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 C -0.04 -1.40 5.91 -19.61 -0.12 -1.51 16 27 C -0.11 -3.22 8.41 71.24 0.60 -2.62 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.04 8.08 -2.38 -0.02 1.02 16 30 H 0.08 1.18 5.88 -2.39 -0.01 1.17 16 31 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 32 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 33 H 0.11 4.38 6.46 -2.91 -0.02 4.37 16 34 H 0.41 17.25 5.26 -92.71 -0.49 16.76 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.05 2.08 7.64 -2.39 -0.02 2.07 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 3.32 6.36 -2.38 -0.02 3.31 16 43 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.09 1.87 5.69 -2.39 -0.01 1.86 16 46 H 0.07 2.41 5.89 -2.38 -0.01 2.39 16 Total: -1.00 -62.36 358.61 2.61 -59.75 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.51 Total: 34.00 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.22 Total: 10.19 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -3.50 Total: -108.85 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.65 Total: -40.58 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -62.36 2.61 -59.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051236779.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.675 kcal (2) G-P(sol) polarization free energy of solvation -62.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds