Wall clock time and date at job start Tue Mar 31 2020 12:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00246 * 2 1 4 4 H 1.48501 * 109.47135 * 239.99924 * 3 2 1 5 5 H 1.48508 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47332 * 119.99391 * 3 2 1 7 7 C 1.38812 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00272 * 160.40714 * 7 2 1 9 9 N 1.36933 * 120.00112 * 340.41274 * 7 2 1 10 10 C 1.43437 * 120.53989 * 156.68253 * 9 7 2 11 11 C 1.54901 * 116.08010 * 271.58678 * 10 9 7 12 12 C 1.54844 * 110.13816 * 318.64281 * 11 10 9 13 13 C 1.50124 * 110.81952 * 321.12846 * 12 11 10 14 14 H 1.09009 * 110.24828 * 338.71414 * 13 12 11 15 15 N 1.46491 * 110.37376 * 216.72282 * 13 12 11 16 16 C 1.34783 * 120.00430 * 157.00969 * 15 13 12 17 17 O 1.21288 * 119.99231 * 0.02562 * 16 15 13 18 18 C 1.50692 * 120.00129 * 179.97438 * 16 15 13 19 19 H 1.08997 * 115.55575 * 34.42028 * 18 16 15 20 20 C 1.53006 * 117.49782 * 248.74773 * 18 16 15 21 21 C 1.53008 * 117.49590 * 180.09267 * 18 16 15 22 22 H 1.09002 * 117.49768 * 359.97438 * 21 18 16 23 23 C 1.50704 * 117.49689 * 214.97949 * 21 18 16 24 24 C 1.34518 * 125.78959 * 119.71144 * 23 21 18 25 25 C 1.41377 * 106.83901 * 179.88985 * 24 23 21 26 26 C 1.34513 * 106.84111 * 0.37509 * 25 24 23 27 27 O 1.34298 * 108.42527 * 359.77115 * 26 25 24 28 28 C 1.52525 * 105.41540 * 97.68479 * 13 12 11 29 29 C 1.46239 * 114.27890 * 270.59859 * 28 13 12 30 30 H 0.97001 * 120.00228 * 0.02562 * 1 2 3 31 31 H 1.09000 * 108.15352 * 33.30535 * 10 9 7 32 32 H 1.09008 * 108.15829 * 150.07984 * 10 9 7 33 33 H 1.08997 * 109.35639 * 78.84034 * 11 10 9 34 34 H 1.08998 * 109.35827 * 198.56928 * 11 10 9 35 35 H 1.09010 * 109.20285 * 200.78888 * 12 11 10 36 36 H 1.08993 * 109.21104 * 81.48104 * 12 11 10 37 37 H 0.97002 * 120.00114 * 337.01947 * 15 13 12 38 38 H 1.08995 * 117.49924 * 0.02562 * 20 18 16 39 39 H 1.09005 * 117.49678 * 145.02434 * 20 18 16 40 40 H 1.07995 * 126.57725 * 0.03060 * 24 23 21 41 41 H 1.08002 * 126.57862 * 180.16473 * 25 24 23 42 42 H 1.08008 * 125.78598 * 179.79100 * 26 25 24 43 43 H 1.09000 * 108.51855 * 31.83421 * 28 13 12 44 44 H 1.09002 * 108.52242 * 149.35433 * 28 13 12 45 45 H 1.09001 * 109.84515 * 177.91536 * 29 28 13 46 46 H 1.08997 * 109.84621 * 298.89850 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0433 -1.2294 -0.3131 9 7 1.3850 -2.3535 0.3986 10 6 1.8643 -3.6323 -0.0401 11 6 1.2862 -4.1534 -1.3793 12 6 -0.2324 -3.8605 -1.4543 13 6 -0.8831 -4.0706 -0.1178 14 1 -0.2679 -4.7222 0.5029 15 7 -2.2197 -4.6461 -0.2861 16 6 -2.7894 -5.3338 0.7234 17 8 -2.1955 -5.4757 1.7714 18 6 -4.1645 -5.9252 0.5505 19 1 -4.3988 -6.2855 -0.4512 20 6 -5.3051 -5.3116 1.3652 21 6 -4.7574 -6.6927 1.7339 22 1 -4.1525 -6.7701 2.6374 23 6 -5.6209 -7.8886 1.4254 24 6 -5.3811 -9.1536 1.8150 25 6 -6.4392 -9.9448 1.3117 26 6 -7.2579 -9.1173 0.6376 27 8 -6.7574 -7.8732 0.7097 28 6 -0.9806 -2.6832 0.5082 29 6 0.1861 -2.2979 1.3012 30 1 -0.4850 0.8400 -0.0004 31 1 2.9483 -3.5733 -0.1380 32 1 1.6347 -4.3649 0.7337 33 1 1.7911 -3.6574 -2.2082 34 1 1.4486 -5.2290 -1.4488 35 1 -0.6906 -4.5272 -2.1850 36 1 -0.3834 -2.8277 -1.7683 37 1 -2.6947 -4.5324 -1.1242 38 1 -5.0608 -4.4799 2.0260 39 1 -6.2897 -5.2687 0.8996 40 1 -4.5425 -9.4983 2.4018 41 1 -6.5642 -11.0097 1.4406 42 1 -8.1644 -9.4047 0.1254 43 1 -1.1140 -1.9522 -0.2892 44 1 -1.8608 -2.6543 1.1506 45 1 0.0564 -1.2849 1.6822 46 1 0.3152 -2.9926 2.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052736131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:37 Heat of formation + Delta-G solvation = 34.136961 kcal Electronic energy + Delta-G solvation = -26808.181724 eV Core-core repulsion = 23087.316383 eV Total energy + Delta-G solvation = -3720.865341 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.79800 -39.94515 -38.02293 -36.38241 -34.51792 -33.20355 -32.48247 -30.95751 -30.46755 -29.65348 -26.29441 -24.89622 -23.41979 -23.11133 -23.04542 -21.88637 -20.40529 -19.97263 -19.91009 -19.04664 -17.83762 -16.95852 -16.65567 -16.17332 -15.77090 -15.19077 -14.86460 -14.53210 -14.39334 -13.86389 -13.73717 -13.43869 -13.29954 -13.03353 -12.92487 -12.69481 -12.58802 -12.10885 -12.02793 -11.78685 -11.40409 -11.20494 -11.17676 -10.76434 -10.74081 -10.69643 -10.33478 -10.17828 -10.10966 -9.99122 -9.78829 -9.54567 -9.49142 -9.24119 -8.64317 -8.55084 -8.30399 -6.69448 -5.77063 -3.15841 1.43058 2.34259 2.68018 2.73826 3.39852 3.41466 3.45917 3.48283 3.75970 4.30876 4.50688 4.52872 4.65935 4.79172 4.84815 5.06206 5.09279 5.35426 5.41981 5.46105 5.58337 5.63588 5.66874 5.70478 5.77050 5.79361 5.87022 5.89747 6.14760 6.27152 6.28566 6.33106 6.50243 6.56261 6.68287 6.87550 6.91559 6.92205 6.94697 7.09284 7.14571 7.29795 7.61013 7.75793 7.85336 7.98251 8.45025 8.51848 9.21279 9.89268 10.43005 11.30143 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029322 B = 0.002564 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.678360 B =10917.100191 C =11312.089077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.154 3.846 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.145 3.855 14 H 0.084 0.916 15 N -0.713 5.713 16 C 0.540 3.460 17 O -0.540 6.540 18 C -0.173 4.173 19 H 0.124 0.876 20 C -0.137 4.137 21 C -0.052 4.052 22 H 0.149 0.851 23 C 0.021 3.979 24 C -0.203 4.203 25 C -0.212 4.212 26 C -0.045 4.045 27 O -0.176 6.176 28 C -0.131 4.131 29 C 0.169 3.831 30 H 0.252 0.748 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.395 0.605 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.202 0.798 43 H 0.102 0.898 44 H 0.028 0.972 45 H 0.091 0.909 46 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.752 -15.732 -0.849 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.084 0.916 9 N -0.309 5.309 10 C 0.025 3.975 11 C -0.181 4.181 12 C -0.151 4.151 13 C 0.042 3.958 14 H 0.102 0.898 15 N -0.362 5.362 16 C 0.325 3.675 17 O -0.417 6.417 18 C -0.194 4.194 19 H 0.142 0.858 20 C -0.174 4.174 21 C -0.070 4.070 22 H 0.166 0.834 23 C -0.028 4.028 24 C -0.222 4.222 25 C -0.232 4.232 26 C -0.113 4.113 27 O -0.072 6.072 28 C -0.171 4.171 29 C 0.045 3.955 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.229 0.771 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.219 0.781 43 H 0.120 0.880 44 H 0.047 0.953 45 H 0.109 0.891 46 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -13.513 -15.388 -0.212 20.480 hybrid contribution 0.072 0.589 -0.688 0.908 sum -13.441 -14.800 -0.900 20.012 Atomic orbital electron populations 1.69951 1.05063 1.25246 1.54383 1.24883 0.95240 0.98151 1.01399 0.86403 0.78948 0.83599 0.78004 1.21142 1.21803 1.21222 1.19174 0.93588 0.85410 1.39444 0.91574 1.44258 1.33747 1.00880 1.52061 1.20439 0.96447 0.88225 0.92412 1.22833 0.94944 0.98409 1.01946 1.21696 0.96043 1.02419 0.94896 1.20523 0.80932 0.96178 0.98135 0.89782 1.46184 1.19469 1.54267 1.16286 1.19388 0.85884 0.78214 0.83976 1.90703 1.63956 1.59903 1.27169 1.22422 0.93795 1.05133 0.98040 0.85822 1.23096 0.97052 0.95646 1.01641 1.20515 0.98948 0.87825 0.99747 0.83389 1.21417 0.87533 0.95795 0.98103 1.21575 1.01936 0.92172 1.06521 1.21844 0.96662 1.01022 1.03623 1.24009 1.01240 0.81182 1.04860 1.83976 1.33571 1.31551 1.58112 1.21327 0.98774 0.94639 1.02352 1.20098 0.84973 1.00519 0.89941 0.93773 0.94847 0.95274 0.92644 0.93724 0.94131 0.90082 0.77150 0.87030 0.87236 0.83268 0.83432 0.78107 0.88001 0.95284 0.89114 0.97276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 9.42 55.49 0.52 -24.01 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 21.38 29.60 -169.99 -5.03 16.35 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.58 9.62 -15.06 -0.14 -6.72 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.41 2.60 -175.07 -0.46 -14.87 16 10 C 0.15 3.25 5.18 -4.66 -0.02 3.23 16 11 C -0.14 -2.58 6.41 -24.76 -0.16 -2.74 16 12 C -0.11 -2.04 5.30 -27.19 -0.14 -2.18 16 13 C 0.15 2.70 2.20 -69.61 -0.15 2.55 16 14 H 0.08 1.73 5.76 -51.92 -0.30 1.43 16 15 N -0.71 -10.92 4.98 -55.45 -0.28 -11.20 16 16 C 0.54 8.43 7.54 -10.99 -0.08 8.35 16 17 O -0.54 -10.47 15.94 5.55 0.09 -10.38 16 18 C -0.17 -2.03 5.89 -91.77 -0.54 -2.57 16 19 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.14 -1.44 9.87 -26.69 -0.26 -1.70 16 21 C -0.05 -0.59 5.75 -91.73 -0.53 -1.12 16 22 H 0.15 1.79 7.67 -51.93 -0.40 1.39 16 23 C 0.02 0.24 6.80 -35.62 -0.24 0.00 16 24 C -0.20 -2.14 10.81 -39.70 -0.43 -2.57 16 25 C -0.21 -1.89 10.91 -39.70 -0.43 -2.32 16 26 C -0.05 -0.38 12.09 29.42 0.36 -0.02 16 27 O -0.18 -1.87 10.36 5.71 0.06 -1.81 16 28 C -0.13 -2.85 4.73 -30.19 -0.14 -2.99 16 29 C 0.17 4.05 5.24 -5.20 -0.03 4.02 16 30 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 32 H 0.03 0.60 6.88 -51.92 -0.36 0.24 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.62 7.84 -51.92 -0.41 0.22 16 36 H 0.08 1.71 6.83 -51.93 -0.35 1.36 16 37 H 0.40 4.94 8.49 -40.82 -0.35 4.59 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.11 1.00 7.96 -51.93 -0.41 0.58 16 40 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.20 0.88 8.06 -52.48 -0.42 0.45 16 43 H 0.10 2.47 5.29 -51.93 -0.27 2.20 16 44 H 0.03 0.63 7.96 -51.93 -0.41 0.22 16 45 H 0.09 2.42 6.05 -51.93 -0.31 2.10 16 46 H 0.01 0.22 8.12 -51.93 -0.42 -0.21 16 LS Contribution 367.27 15.07 5.53 5.53 Total: -1.00 -30.37 367.27 -9.53 -39.90 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.92 Total: 7.34 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -3.04 Total: -6.85 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -0.21 Total: -50.08 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.15 Total: -12.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.37 -9.53 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052736131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.037 kcal (2) G-P(sol) polarization free energy of solvation -30.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds