Wall clock time and date at job start Tue Mar 31 2020 12:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00246 * 2 1 4 4 H 1.48501 * 109.47135 * 239.99924 * 3 2 1 5 5 H 1.48508 * 109.46803 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47332 * 119.99391 * 3 2 1 7 7 C 1.38812 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00272 * 160.40714 * 7 2 1 9 9 N 1.36933 * 120.00112 * 340.41274 * 7 2 1 10 10 C 1.43437 * 120.53989 * 156.68253 * 9 7 2 11 11 C 1.54901 * 116.08010 * 271.58678 * 10 9 7 12 12 C 1.54844 * 110.13816 * 318.64281 * 11 10 9 13 13 C 1.50124 * 110.81952 * 321.12846 * 12 11 10 14 14 H 1.09009 * 110.24828 * 338.71414 * 13 12 11 15 15 N 1.46491 * 110.37376 * 216.72282 * 13 12 11 16 16 C 1.34783 * 120.00430 * 157.00969 * 15 13 12 17 17 O 1.21288 * 119.99231 * 0.02562 * 16 15 13 18 18 C 1.50692 * 120.00129 * 179.97438 * 16 15 13 19 19 H 1.08997 * 115.55575 * 34.42028 * 18 16 15 20 20 C 1.53006 * 117.49782 * 248.74773 * 18 16 15 21 21 C 1.53008 * 117.49590 * 180.09267 * 18 16 15 22 22 H 1.09002 * 117.49768 * 359.97438 * 21 18 16 23 23 C 1.50704 * 117.49689 * 214.97949 * 21 18 16 24 24 C 1.34518 * 125.78959 * 119.71144 * 23 21 18 25 25 C 1.41377 * 106.83901 * 179.88985 * 24 23 21 26 26 C 1.34513 * 106.84111 * 0.37509 * 25 24 23 27 27 O 1.34298 * 108.42527 * 359.77115 * 26 25 24 28 28 C 1.52525 * 105.41540 * 97.68479 * 13 12 11 29 29 C 1.46239 * 114.27890 * 270.59859 * 28 13 12 30 30 H 0.97001 * 120.00228 * 0.02562 * 1 2 3 31 31 H 1.09000 * 108.15352 * 33.30535 * 10 9 7 32 32 H 1.09008 * 108.15829 * 150.07984 * 10 9 7 33 33 H 1.08997 * 109.35639 * 78.84034 * 11 10 9 34 34 H 1.08998 * 109.35827 * 198.56928 * 11 10 9 35 35 H 1.09010 * 109.20285 * 200.78888 * 12 11 10 36 36 H 1.08993 * 109.21104 * 81.48104 * 12 11 10 37 37 H 0.97002 * 120.00114 * 337.01947 * 15 13 12 38 38 H 1.08995 * 117.49924 * 0.02562 * 20 18 16 39 39 H 1.09005 * 117.49678 * 145.02434 * 20 18 16 40 40 H 1.07995 * 126.57725 * 0.03060 * 24 23 21 41 41 H 1.08002 * 126.57862 * 180.16473 * 25 24 23 42 42 H 1.08008 * 125.78598 * 179.79100 * 26 25 24 43 43 H 1.09000 * 108.51855 * 31.83421 * 28 13 12 44 44 H 1.09002 * 108.52242 * 149.35433 * 28 13 12 45 45 H 1.09001 * 109.84515 * 177.91536 * 29 28 13 46 46 H 1.08997 * 109.84621 * 298.89850 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0433 -1.2294 -0.3131 9 7 1.3850 -2.3535 0.3986 10 6 1.8643 -3.6323 -0.0401 11 6 1.2862 -4.1534 -1.3793 12 6 -0.2324 -3.8605 -1.4543 13 6 -0.8831 -4.0706 -0.1178 14 1 -0.2679 -4.7222 0.5029 15 7 -2.2197 -4.6461 -0.2861 16 6 -2.7894 -5.3338 0.7234 17 8 -2.1955 -5.4757 1.7714 18 6 -4.1645 -5.9252 0.5505 19 1 -4.3988 -6.2855 -0.4512 20 6 -5.3051 -5.3116 1.3652 21 6 -4.7574 -6.6927 1.7339 22 1 -4.1525 -6.7701 2.6374 23 6 -5.6209 -7.8886 1.4254 24 6 -5.3811 -9.1536 1.8150 25 6 -6.4392 -9.9448 1.3117 26 6 -7.2579 -9.1173 0.6376 27 8 -6.7574 -7.8732 0.7097 28 6 -0.9806 -2.6832 0.5082 29 6 0.1861 -2.2979 1.3012 30 1 -0.4850 0.8400 -0.0004 31 1 2.9483 -3.5733 -0.1380 32 1 1.6347 -4.3649 0.7337 33 1 1.7911 -3.6574 -2.2082 34 1 1.4486 -5.2290 -1.4488 35 1 -0.6906 -4.5272 -2.1850 36 1 -0.3834 -2.8277 -1.7683 37 1 -2.6947 -4.5324 -1.1242 38 1 -5.0608 -4.4799 2.0260 39 1 -6.2897 -5.2687 0.8996 40 1 -4.5425 -9.4983 2.4018 41 1 -6.5642 -11.0097 1.4406 42 1 -8.1644 -9.4047 0.1254 43 1 -1.1140 -1.9522 -0.2892 44 1 -1.8608 -2.6543 1.1506 45 1 0.0564 -1.2849 1.6822 46 1 0.3152 -2.9926 2.1312 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052736131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:36 Heat of formation + Delta-G solvation = 17.181966 kcal Electronic energy + Delta-G solvation = -26808.916948 eV Core-core repulsion = 23087.316383 eV Total energy + Delta-G solvation = -3721.600565 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.51208 -41.25080 -39.54133 -37.53057 -36.13678 -34.19841 -33.91071 -32.68497 -32.24840 -30.42076 -28.04598 -26.31602 -24.92891 -24.55602 -24.12041 -22.60593 -21.78837 -21.34643 -21.01276 -20.54032 -18.72172 -18.56895 -17.95598 -17.27980 -16.83653 -16.82245 -16.13205 -15.84690 -15.67306 -15.58220 -15.39894 -15.06996 -14.56946 -14.07032 -13.79441 -13.73867 -13.68994 -13.51197 -13.40695 -13.22305 -13.04226 -12.91871 -12.60750 -12.59265 -12.13986 -11.98584 -11.87171 -11.71838 -11.66510 -11.61131 -11.20307 -11.02914 -10.87182 -10.81045 -10.50128 -9.92222 -9.29066 -8.66459 -7.81002 -5.21915 0.69220 1.47950 1.49011 1.52156 1.57591 1.69600 1.96491 2.25250 2.55605 2.83339 3.32139 3.45646 3.56978 3.61321 3.76002 3.99133 4.05575 4.12314 4.13781 4.18209 4.27170 4.37091 4.53824 4.61759 4.65416 4.68273 4.84014 4.86304 4.90078 4.94324 5.03080 5.05479 5.08702 5.20182 5.21216 5.23227 5.32333 5.37723 5.53324 5.60361 5.64251 5.69955 5.72393 6.07840 6.20856 6.42970 6.61708 7.17783 7.28792 7.90837 8.43485 9.23549 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029322 B = 0.002564 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.678360 B =10917.100191 C =11312.089077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.043 4.043 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.600 5.600 10 C 0.147 3.853 11 C -0.132 4.132 12 C -0.104 4.104 13 C 0.161 3.839 14 H 0.068 0.932 15 N -0.704 5.704 16 C 0.538 3.462 17 O -0.582 6.582 18 C -0.170 4.170 19 H 0.147 0.853 20 C -0.124 4.124 21 C -0.052 4.052 22 H 0.134 0.866 23 C 0.002 3.998 24 C -0.215 4.215 25 C -0.227 4.227 26 C -0.037 4.037 27 O -0.185 6.185 28 C -0.115 4.115 29 C 0.173 3.827 30 H 0.247 0.753 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.412 0.588 38 H 0.104 0.896 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.169 0.831 42 H 0.241 0.759 43 H 0.079 0.921 44 H 0.019 0.981 45 H 0.060 0.940 46 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.116 -17.396 -2.319 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.239 4.239 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.213 1.213 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.322 5.322 10 C 0.019 3.981 11 C -0.173 4.173 12 C -0.142 4.142 13 C 0.056 3.944 14 H 0.087 0.913 15 N -0.355 5.355 16 C 0.326 3.674 17 O -0.462 6.462 18 C -0.191 4.191 19 H 0.165 0.835 20 C -0.162 4.162 21 C -0.070 4.070 22 H 0.152 0.848 23 C -0.048 4.048 24 C -0.235 4.235 25 C -0.246 4.246 26 C -0.104 4.104 27 O -0.082 6.082 28 C -0.155 4.155 29 C 0.049 3.951 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.249 0.751 38 H 0.122 0.878 39 H 0.148 0.852 40 H 0.169 0.831 41 H 0.186 0.814 42 H 0.257 0.743 43 H 0.097 0.903 44 H 0.038 0.962 45 H 0.078 0.922 46 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -14.883 -17.075 -1.715 22.716 hybrid contribution 0.489 1.028 -0.167 1.151 sum -14.394 -16.046 -1.882 21.638 Atomic orbital electron populations 1.70098 1.05912 1.25274 1.54934 1.25519 0.96027 1.00628 1.01682 0.85485 0.77684 0.80181 0.77864 1.20500 1.22163 1.21332 1.19371 0.93692 0.86533 1.39389 0.91833 1.44320 1.33796 1.01599 1.52534 1.20579 0.96538 0.86899 0.94096 1.22727 0.94819 1.00118 0.99678 1.21543 0.96117 1.01325 0.95192 1.20103 0.82557 0.93865 0.97849 0.91345 1.46007 1.18428 1.53792 1.17230 1.20021 0.86951 0.77408 0.83041 1.90687 1.65342 1.61387 1.28826 1.22334 0.91584 1.05714 0.99468 0.83495 1.23162 0.97295 0.94908 1.00796 1.20382 0.99019 0.88678 0.98950 0.84828 1.21304 0.88283 0.95675 0.99552 1.21854 1.02588 0.92574 1.06447 1.22162 0.96307 1.02212 1.03880 1.24832 1.01753 0.80095 1.03687 1.83965 1.33342 1.32788 1.58116 1.21091 0.97208 0.96214 1.01007 1.19931 0.86194 0.98656 0.90334 0.94353 0.94831 0.94880 0.93016 0.90587 0.90561 0.93207 0.75148 0.87761 0.85221 0.83131 0.81373 0.74295 0.90308 0.96182 0.92202 0.97465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.13 9.42 21.65 0.20 -50.93 16 2 C -0.04 -2.31 4.91 84.86 0.42 -1.90 16 3 Si 0.96 44.51 29.60 68.60 2.03 46.54 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.26 -14.06 9.62 84.03 0.81 -13.25 16 8 H 0.06 3.41 7.89 -2.91 -0.02 3.38 16 9 N -0.60 -29.93 2.60 -707.81 -1.84 -31.77 16 10 C 0.15 6.15 5.18 87.60 0.45 6.61 16 11 C -0.13 -4.67 6.41 31.87 0.20 -4.46 16 12 C -0.10 -3.61 5.30 30.30 0.16 -3.45 16 13 C 0.16 5.90 2.20 43.91 0.10 6.00 16 14 H 0.07 2.79 5.76 -2.38 -0.01 2.78 16 15 N -0.70 -20.71 4.98 -447.72 -2.23 -22.94 16 16 C 0.54 16.44 7.54 87.65 0.66 17.10 16 17 O -0.58 -22.84 15.94 -3.05 -0.05 -22.89 16 18 C -0.17 -3.75 5.89 -11.54 -0.07 -3.82 16 19 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 20 C -0.12 -2.44 9.87 30.62 0.30 -2.14 16 21 C -0.05 -1.15 5.75 -11.51 -0.07 -1.21 16 22 H 0.13 3.32 7.67 -2.39 -0.02 3.30 16 23 C 0.00 0.03 6.80 24.83 0.17 0.20 16 24 C -0.22 -4.30 10.81 22.19 0.24 -4.06 16 25 C -0.23 -3.50 10.91 22.19 0.24 -3.26 16 26 C -0.04 -0.50 12.09 66.97 0.81 0.31 16 27 O -0.19 -3.51 10.36 -2.49 -0.03 -3.53 16 28 C -0.12 -5.14 4.73 28.36 0.13 -5.00 16 29 C 0.17 8.60 5.24 83.58 0.44 9.04 16 30 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 31 H 0.03 1.39 7.99 -2.39 -0.02 1.37 16 32 H 0.03 1.35 6.88 -2.38 -0.02 1.33 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.08 2.12 7.84 -2.38 -0.02 2.10 16 36 H 0.05 2.08 6.83 -2.39 -0.02 2.06 16 37 H 0.41 9.39 8.49 -92.71 -0.79 8.60 16 38 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.13 2.04 7.96 -2.38 -0.02 2.02 16 40 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.24 1.06 8.06 -2.91 -0.02 1.04 16 43 H 0.08 3.93 5.29 -2.39 -0.01 3.91 16 44 H 0.02 0.89 7.96 -2.39 -0.02 0.87 16 45 H 0.06 3.33 6.05 -2.39 -0.01 3.31 16 46 H 0.01 0.36 8.12 -2.39 -0.02 0.34 16 Total: -1.00 -67.11 367.27 3.30 -63.82 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.20 Total: 25.01 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.00 Total: -3.30 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.87 Total: -105.64 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.07 Total: -26.42 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -67.11 3.30 -63.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052736131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.998 kcal (2) G-P(sol) polarization free energy of solvation -67.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds