Wall clock time and date at job start Tue Mar 31 2020 12:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00438 * 2 1 4 4 H 1.48497 * 109.46819 * 239.99848 * 3 2 1 5 5 H 1.48502 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47284 * 119.99564 * 3 2 1 7 7 C 1.38815 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00261 * 195.66732 * 7 2 1 9 9 N 1.36938 * 120.00071 * 15.67097 * 7 2 1 10 10 C 1.47609 * 118.64251 * 26.52160 * 9 7 2 11 11 C 1.53945 * 112.13785 * 137.84658 * 10 9 7 12 12 C 1.51032 * 109.97177 * 319.42215 * 11 10 9 13 13 C 1.52569 * 109.27752 * 92.06866 * 12 11 10 14 14 H 1.09001 * 108.50916 * 35.95502 * 13 12 11 15 15 N 1.46502 * 108.51216 * 153.60311 * 13 12 11 16 16 C 1.34774 * 119.99806 * 207.30955 * 15 13 12 17 17 O 1.21281 * 120.00182 * 359.97438 * 16 15 13 18 18 C 1.50698 * 119.99874 * 180.02562 * 16 15 13 19 19 H 1.08997 * 115.56560 * 34.31152 * 18 16 15 20 20 C 1.53004 * 117.49742 * 248.61751 * 18 16 15 21 21 C 1.52999 * 60.00160 * 252.50890 * 20 18 16 22 22 H 1.09008 * 117.51353 * 107.47742 * 21 20 18 23 23 C 1.50696 * 117.50223 * 252.50902 * 21 20 18 24 24 C 1.34512 * 125.78870 * 188.62578 * 23 21 20 25 25 C 1.41384 * 106.83816 * 179.77460 * 24 23 21 26 26 C 1.34517 * 106.84199 * 0.22166 * 25 24 23 27 27 O 1.34298 * 108.41908 * 0.02562 * 26 25 24 28 28 C 1.47090 * 114.20529 * 274.77920 * 13 12 11 29 29 C 1.44579 * 118.64495 * 206.50653 * 9 7 2 30 30 H 0.97003 * 119.99535 * 0.02562 * 1 2 3 31 31 H 1.09000 * 108.94825 * 258.53468 * 10 9 7 32 32 H 1.09002 * 108.94434 * 17.16439 * 10 9 7 33 33 H 1.09002 * 109.36598 * 79.63215 * 11 10 9 34 34 H 1.09000 * 109.36580 * 199.37049 * 11 10 9 35 35 H 1.08992 * 109.63698 * 332.06026 * 12 11 10 36 36 H 1.09004 * 109.42113 * 211.94197 * 12 11 10 37 37 H 0.97000 * 119.99718 * 27.30914 * 15 13 12 38 38 H 1.09001 * 117.49416 * 145.01917 * 20 18 16 39 39 H 1.09001 * 117.49850 * 0.02562 * 20 18 16 40 40 H 1.07997 * 126.58101 * 0.03044 * 24 23 21 41 41 H 1.08002 * 126.58047 * 180.26575 * 25 24 23 42 42 H 1.07997 * 125.78710 * 179.97438 * 26 25 24 43 43 H 1.09003 * 109.32987 * 183.14460 * 28 13 12 44 44 H 1.09003 * 109.32705 * 302.62043 * 28 13 12 45 45 H 1.08999 * 109.44730 * 150.70621 * 29 9 7 46 46 H 1.09004 * 109.43001 * 30.77537 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0601 -1.2195 0.2531 9 7 1.3637 -2.3662 -0.3193 10 6 0.1798 -2.2995 -1.1983 11 6 0.1724 -3.4256 -2.2480 12 6 1.5663 -3.6341 -2.7906 13 6 2.2719 -4.7078 -1.9677 14 1 1.5386 -5.4617 -1.6813 15 7 3.2882 -5.3453 -2.8085 16 6 3.6599 -6.6183 -2.5680 17 8 3.1534 -7.2359 -1.6554 18 6 4.7058 -7.2739 -3.4325 19 1 5.4955 -6.6163 -3.7958 20 6 4.2515 -8.4082 -4.3534 21 6 5.0846 -8.7205 -3.1087 22 1 4.5775 -9.1979 -2.2701 23 6 6.5207 -9.1270 -3.3165 24 6 7.3517 -9.5929 -2.3669 25 6 8.5903 -9.8518 -2.9976 26 6 8.4436 -9.5240 -4.2939 27 8 7.1891 -9.0822 -4.4805 28 6 2.9231 -4.2029 -0.7493 29 6 1.8691 -3.6098 0.2177 30 1 -0.4849 0.8401 -0.0004 31 1 -0.7195 -2.3790 -0.5875 32 1 0.1735 -1.3376 -1.7111 33 1 -0.1788 -4.3482 -1.7858 34 1 -0.4957 -3.1536 -3.0651 35 1 2.1269 -2.7014 -2.7286 36 1 1.5062 -3.9542 -3.8309 37 1 3.6936 -4.8512 -3.5381 38 1 4.7423 -8.4966 -5.3226 39 1 3.1961 -8.6798 -4.3343 40 1 7.1165 -9.7444 -1.3238 41 1 9.4828 -10.2392 -2.5287 42 1 9.2056 -9.6019 -5.0552 43 1 3.4467 -5.0210 -0.2546 44 1 3.6416 -3.4287 -1.0187 45 1 1.0465 -4.3153 0.3351 46 1 2.3300 -3.4250 1.1881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052736132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:43 Heat of formation + Delta-G solvation = 26.279317 kcal Electronic energy + Delta-G solvation = -26501.936371 eV Core-core repulsion = 22780.730297 eV Total energy + Delta-G solvation = -3721.206074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -42.84427 -40.14487 -38.09454 -36.50181 -34.74512 -33.24670 -32.45243 -31.60398 -30.19373 -29.59801 -26.24697 -24.89593 -23.78169 -23.45484 -22.80889 -21.93484 -20.46006 -20.20951 -19.85268 -19.17160 -17.91498 -17.16249 -16.69357 -16.21790 -15.88727 -15.36704 -15.07477 -14.65321 -14.53276 -13.98640 -13.63088 -13.47219 -13.25723 -13.06137 -12.98749 -12.82989 -12.63775 -12.50479 -12.19786 -11.95059 -11.42461 -11.31343 -11.17974 -10.84052 -10.80367 -10.70883 -10.44698 -10.26567 -10.14994 -10.09006 -9.91541 -9.74842 -9.64660 -9.56400 -8.81064 -8.60887 -8.37893 -6.64168 -5.76286 -3.19768 1.37936 2.29046 2.57668 2.66214 3.26773 3.38391 3.44267 3.45139 3.64773 4.21505 4.40713 4.51310 4.56238 4.72309 4.80191 4.94299 5.03012 5.20188 5.34396 5.36226 5.47212 5.52626 5.61459 5.63525 5.67156 5.73616 5.78145 5.84222 6.03458 6.07672 6.21819 6.23004 6.33868 6.48392 6.51073 6.66474 6.77284 6.83596 6.85461 6.87390 6.93935 7.06958 7.44802 7.67599 7.72819 7.84154 8.34821 8.49369 9.26443 9.93417 10.38739 11.31093 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002508 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.491065 B =11163.664698 C =11719.853766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.177 3.823 11 C -0.140 4.140 12 C -0.111 4.111 13 C 0.162 3.838 14 H 0.073 0.927 15 N -0.721 5.721 16 C 0.541 3.459 17 O -0.542 6.542 18 C -0.174 4.174 19 H 0.125 0.875 20 C -0.138 4.138 21 C -0.050 4.050 22 H 0.148 0.852 23 C 0.019 3.981 24 C -0.201 4.201 25 C -0.212 4.212 26 C -0.044 4.044 27 O -0.176 6.176 28 C -0.155 4.155 29 C 0.163 3.837 30 H 0.253 0.747 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.050 0.950 37 H 0.397 0.603 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.203 0.797 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.034 0.966 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.926 -17.514 -11.302 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.180 4.180 12 C -0.149 4.149 13 C 0.059 3.941 14 H 0.091 0.909 15 N -0.370 5.370 16 C 0.326 3.674 17 O -0.420 6.420 18 C -0.195 4.195 19 H 0.143 0.857 20 C -0.175 4.175 21 C -0.068 4.068 22 H 0.166 0.834 23 C -0.031 4.031 24 C -0.220 4.220 25 C -0.231 4.231 26 C -0.112 4.112 27 O -0.073 6.073 28 C -0.196 4.196 29 C 0.034 3.966 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.230 0.770 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.219 0.781 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.258 -17.694 -10.891 23.631 hybrid contribution 1.052 1.129 -0.214 1.557 sum 12.310 -16.565 -11.105 23.436 Atomic orbital electron populations 1.70063 1.05183 1.25466 1.54167 1.25027 0.95255 0.98289 1.00861 0.86406 0.78909 0.83581 0.78072 1.21139 1.21698 1.20950 1.19163 0.92360 0.85014 1.42203 0.91821 1.43677 1.32419 1.01844 1.53246 1.21024 0.88643 0.95529 0.89585 1.22009 0.95095 1.01009 0.99883 1.21276 0.97653 0.99151 0.96866 1.20055 0.89047 0.94508 0.90468 0.90867 1.46423 1.42632 1.13059 1.34923 1.19425 0.82081 0.81918 0.83970 1.90697 1.55788 1.63917 1.31560 1.22439 1.01543 0.91932 1.03609 0.85679 1.23076 1.01176 0.98675 0.94610 1.20488 0.87636 0.96802 1.01871 0.83405 1.21378 0.93768 1.04506 0.83477 1.21587 0.93373 1.06373 1.00662 1.21860 0.99625 1.07295 0.94351 1.24016 0.85069 1.03427 0.98660 1.83967 1.22803 1.66322 1.34171 1.21869 1.00789 0.99917 0.97027 1.20563 0.93859 0.88237 0.93963 0.93661 0.95701 0.90706 0.93391 0.92537 0.90052 0.93173 0.76967 0.87210 0.87198 0.83234 0.83378 0.78064 0.92870 0.91995 0.94800 0.93335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.85 11.01 55.49 0.61 -25.24 16 2 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 3 Si 0.90 21.47 29.58 -169.99 -5.03 16.44 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.26 -6.89 9.44 -15.06 -0.14 -7.04 16 8 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -14.33 2.27 -172.09 -0.39 -14.72 16 10 C 0.18 4.12 4.67 -2.94 -0.01 4.10 16 11 C -0.14 -2.56 5.72 -27.23 -0.16 -2.72 16 12 C -0.11 -1.85 4.98 -27.94 -0.14 -1.99 16 13 C 0.16 2.68 1.94 -70.99 -0.14 2.54 16 14 H 0.07 1.33 6.73 -51.93 -0.35 0.98 16 15 N -0.72 -9.81 4.91 -56.81 -0.28 -10.09 16 16 C 0.54 7.59 7.39 -10.99 -0.08 7.51 16 17 O -0.54 -9.56 15.57 5.56 0.09 -9.47 16 18 C -0.17 -1.85 5.89 -91.77 -0.54 -2.39 16 19 H 0.13 1.18 8.14 -51.93 -0.42 0.76 16 20 C -0.14 -1.24 9.87 -26.73 -0.26 -1.50 16 21 C -0.05 -0.52 5.75 -91.77 -0.53 -1.04 16 22 H 0.15 1.62 7.67 -51.92 -0.40 1.23 16 23 C 0.02 0.20 6.80 -35.63 -0.24 -0.05 16 24 C -0.20 -2.04 10.81 -39.70 -0.43 -2.47 16 25 C -0.21 -1.83 10.91 -39.70 -0.43 -2.26 16 26 C -0.04 -0.35 12.09 29.42 0.36 0.00 16 27 O -0.18 -1.78 10.36 5.72 0.06 -1.72 16 28 C -0.15 -2.86 5.17 -28.59 -0.15 -3.01 16 29 C 0.16 3.46 5.66 -4.09 -0.02 3.44 16 30 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.02 0.63 8.03 -51.93 -0.42 0.22 16 32 H 0.07 1.93 6.33 -51.93 -0.33 1.60 16 33 H 0.05 0.85 7.31 -51.93 -0.38 0.47 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 36 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.40 4.39 8.59 -40.82 -0.35 4.04 16 38 H 0.11 0.85 7.97 -51.93 -0.41 0.44 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 42 H 0.20 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.05 0.99 7.67 -51.93 -0.40 0.59 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.03 0.70 8.06 -51.93 -0.42 0.29 16 46 H 0.05 1.06 7.99 -51.93 -0.41 0.64 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -31.38 371.78 -9.53 -40.91 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.18 Total: 5.13 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -3.01 Total: -6.84 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.06 Total: -50.05 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.15 Total: -11.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.38 -9.53 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052736132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.191 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds