Wall clock time and date at job start Tue Mar 31 2020 12:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00438 * 2 1 4 4 H 1.48497 * 109.46819 * 239.99848 * 3 2 1 5 5 H 1.48502 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47284 * 119.99564 * 3 2 1 7 7 C 1.38815 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00261 * 195.66732 * 7 2 1 9 9 N 1.36938 * 120.00071 * 15.67097 * 7 2 1 10 10 C 1.47609 * 118.64251 * 26.52160 * 9 7 2 11 11 C 1.53945 * 112.13785 * 137.84658 * 10 9 7 12 12 C 1.51032 * 109.97177 * 319.42215 * 11 10 9 13 13 C 1.52569 * 109.27752 * 92.06866 * 12 11 10 14 14 H 1.09001 * 108.50916 * 35.95502 * 13 12 11 15 15 N 1.46502 * 108.51216 * 153.60311 * 13 12 11 16 16 C 1.34774 * 119.99806 * 207.30955 * 15 13 12 17 17 O 1.21281 * 120.00182 * 359.97438 * 16 15 13 18 18 C 1.50698 * 119.99874 * 180.02562 * 16 15 13 19 19 H 1.08997 * 115.56560 * 34.31152 * 18 16 15 20 20 C 1.53004 * 117.49742 * 248.61751 * 18 16 15 21 21 C 1.52999 * 60.00160 * 252.50890 * 20 18 16 22 22 H 1.09008 * 117.51353 * 107.47742 * 21 20 18 23 23 C 1.50696 * 117.50223 * 252.50902 * 21 20 18 24 24 C 1.34512 * 125.78870 * 188.62578 * 23 21 20 25 25 C 1.41384 * 106.83816 * 179.77460 * 24 23 21 26 26 C 1.34517 * 106.84199 * 0.22166 * 25 24 23 27 27 O 1.34298 * 108.41908 * 0.02562 * 26 25 24 28 28 C 1.47090 * 114.20529 * 274.77920 * 13 12 11 29 29 C 1.44579 * 118.64495 * 206.50653 * 9 7 2 30 30 H 0.97003 * 119.99535 * 0.02562 * 1 2 3 31 31 H 1.09000 * 108.94825 * 258.53468 * 10 9 7 32 32 H 1.09002 * 108.94434 * 17.16439 * 10 9 7 33 33 H 1.09002 * 109.36598 * 79.63215 * 11 10 9 34 34 H 1.09000 * 109.36580 * 199.37049 * 11 10 9 35 35 H 1.08992 * 109.63698 * 332.06026 * 12 11 10 36 36 H 1.09004 * 109.42113 * 211.94197 * 12 11 10 37 37 H 0.97000 * 119.99718 * 27.30914 * 15 13 12 38 38 H 1.09001 * 117.49416 * 145.01917 * 20 18 16 39 39 H 1.09001 * 117.49850 * 0.02562 * 20 18 16 40 40 H 1.07997 * 126.58101 * 0.03044 * 24 23 21 41 41 H 1.08002 * 126.58047 * 180.26575 * 25 24 23 42 42 H 1.07997 * 125.78710 * 179.97438 * 26 25 24 43 43 H 1.09003 * 109.32987 * 183.14460 * 28 13 12 44 44 H 1.09003 * 109.32705 * 302.62043 * 28 13 12 45 45 H 1.08999 * 109.44730 * 150.70621 * 29 9 7 46 46 H 1.09004 * 109.43001 * 30.77537 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0601 -1.2195 0.2531 9 7 1.3637 -2.3662 -0.3193 10 6 0.1798 -2.2995 -1.1983 11 6 0.1724 -3.4256 -2.2480 12 6 1.5663 -3.6341 -2.7906 13 6 2.2719 -4.7078 -1.9677 14 1 1.5386 -5.4617 -1.6813 15 7 3.2882 -5.3453 -2.8085 16 6 3.6599 -6.6183 -2.5680 17 8 3.1534 -7.2359 -1.6554 18 6 4.7058 -7.2739 -3.4325 19 1 5.4955 -6.6163 -3.7958 20 6 4.2515 -8.4082 -4.3534 21 6 5.0846 -8.7205 -3.1087 22 1 4.5775 -9.1979 -2.2701 23 6 6.5207 -9.1270 -3.3165 24 6 7.3517 -9.5929 -2.3669 25 6 8.5903 -9.8518 -2.9976 26 6 8.4436 -9.5240 -4.2939 27 8 7.1891 -9.0822 -4.4805 28 6 2.9231 -4.2029 -0.7493 29 6 1.8691 -3.6098 0.2177 30 1 -0.4849 0.8401 -0.0004 31 1 -0.7195 -2.3790 -0.5875 32 1 0.1735 -1.3376 -1.7111 33 1 -0.1788 -4.3482 -1.7858 34 1 -0.4957 -3.1536 -3.0651 35 1 2.1269 -2.7014 -2.7286 36 1 1.5062 -3.9542 -3.8309 37 1 3.6936 -4.8512 -3.5381 38 1 4.7423 -8.4966 -5.3226 39 1 3.1961 -8.6798 -4.3343 40 1 7.1165 -9.7444 -1.3238 41 1 9.4828 -10.2392 -2.5287 42 1 9.2056 -9.6019 -5.0552 43 1 3.4467 -5.0210 -0.2546 44 1 3.6416 -3.4287 -1.0187 45 1 1.0465 -4.3153 0.3351 46 1 2.3300 -3.4250 1.1881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052736132.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:39 Heat of formation + Delta-G solvation = 8.517151 kcal Electronic energy + Delta-G solvation = -26502.706597 eV Core-core repulsion = 22780.730297 eV Total energy + Delta-G solvation = -3721.976300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -43.51989 -41.31268 -39.49447 -37.57865 -36.28816 -34.09504 -33.91753 -33.31934 -31.78190 -30.39584 -27.99381 -26.22037 -25.48560 -24.33425 -24.08976 -22.62087 -21.55329 -21.43050 -21.03579 -20.69296 -18.73543 -18.57059 -18.03373 -17.30172 -16.98060 -16.85415 -16.19031 -15.85906 -15.71967 -15.64639 -15.26048 -15.07481 -14.38527 -14.21621 -14.02929 -13.78018 -13.74650 -13.59457 -13.41429 -13.17865 -13.01964 -12.90133 -12.67682 -12.43808 -12.18700 -12.06301 -11.98220 -11.74865 -11.64044 -11.51120 -11.49866 -11.35205 -10.86814 -10.81685 -10.43261 -10.07283 -9.29749 -8.64633 -7.83687 -5.30102 0.68384 1.47179 1.48201 1.49250 1.56309 1.69476 1.96001 2.22287 2.53224 2.83376 3.29719 3.45455 3.59000 3.66799 3.74180 3.81183 4.03431 4.10958 4.13837 4.18326 4.33094 4.36518 4.44861 4.45450 4.63865 4.69390 4.77528 4.84519 4.89923 4.96345 4.99709 5.02658 5.06074 5.12669 5.15311 5.20309 5.24949 5.33407 5.49776 5.57248 5.58743 5.59873 5.69371 5.83177 6.19436 6.42576 6.59893 7.20560 7.26468 7.96082 8.35617 9.21381 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.002508 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.491065 B =11163.664698 C =11719.853766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.964 3.036 4 H -0.276 1.276 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.264 4.264 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.186 3.814 11 C -0.129 4.129 12 C -0.101 4.101 13 C 0.169 3.831 14 H 0.061 0.939 15 N -0.711 5.711 16 C 0.540 3.460 17 O -0.582 6.582 18 C -0.174 4.174 19 H 0.142 0.858 20 C -0.117 4.117 21 C -0.056 4.056 22 H 0.135 0.865 23 C 0.002 3.998 24 C -0.218 4.218 25 C -0.229 4.229 26 C -0.037 4.037 27 O -0.184 6.184 28 C -0.135 4.135 29 C 0.160 3.840 30 H 0.249 0.751 31 H -0.009 1.009 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.413 0.587 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.150 0.850 41 H 0.167 0.833 42 H 0.241 0.759 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.036 0.964 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.869 -18.415 -13.669 26.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.792 3.208 4 H -0.202 1.202 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.324 5.324 10 C 0.061 3.939 11 C -0.169 4.169 12 C -0.139 4.139 13 C 0.065 3.935 14 H 0.079 0.921 15 N -0.361 5.361 16 C 0.327 3.673 17 O -0.462 6.462 18 C -0.195 4.195 19 H 0.160 0.840 20 C -0.154 4.154 21 C -0.074 4.074 22 H 0.153 0.847 23 C -0.048 4.048 24 C -0.238 4.238 25 C -0.247 4.247 26 C -0.103 4.103 27 O -0.081 6.081 28 C -0.176 4.176 29 C 0.032 3.968 30 H 0.058 0.942 31 H 0.010 0.990 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.249 0.751 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.167 0.833 41 H 0.185 0.815 42 H 0.257 0.743 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.236 -18.612 -13.284 26.420 hybrid contribution 0.483 1.325 0.590 1.529 sum 13.719 -17.287 -12.694 25.459 Atomic orbital electron populations 1.70228 1.06523 1.25733 1.55634 1.25739 0.95989 1.01264 1.01242 0.85405 0.77581 0.79565 0.78260 1.20209 1.22147 1.20565 1.19431 0.92479 0.86088 1.41425 0.91945 1.43852 1.32479 1.02123 1.53916 1.20823 0.86971 0.96222 0.89867 1.21863 0.96999 0.99042 0.98951 1.21153 0.95919 0.98107 0.98689 1.19733 0.89369 0.94188 0.90203 0.92098 1.46201 1.41984 1.13114 1.34840 1.19963 0.82042 0.81614 0.83635 1.90685 1.57307 1.64807 1.33397 1.22340 1.01048 0.92228 1.03876 0.84048 1.23168 1.01250 0.96289 0.94701 1.20394 0.88129 0.96428 1.02486 0.84726 1.21357 0.93905 1.05627 0.83911 1.21860 0.94404 1.06537 1.00952 1.22170 0.99767 1.07919 0.94883 1.24815 0.84726 1.01412 0.99395 1.83957 1.23656 1.66604 1.33895 1.21606 0.99507 0.99246 0.97286 1.20645 0.94544 0.87388 0.94232 0.94198 0.99042 0.93588 0.92774 0.90341 0.92112 0.89620 0.75088 0.85359 0.86955 0.83258 0.81532 0.74305 0.92999 0.92798 0.94578 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.92 11.01 21.65 0.24 -54.68 16 2 C -0.05 -2.60 4.87 84.86 0.41 -2.19 16 3 Si 0.96 44.58 29.58 68.60 2.03 46.61 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.26 -14.34 9.44 84.03 0.79 -13.54 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.32 16 9 N -0.60 -29.78 2.27 -698.36 -1.58 -31.36 16 10 C 0.19 8.85 4.67 86.49 0.40 9.25 16 11 C -0.13 -4.58 5.72 30.27 0.17 -4.41 16 12 C -0.10 -3.14 4.98 29.81 0.15 -2.99 16 13 C 0.17 5.36 1.94 43.01 0.08 5.45 16 14 H 0.06 2.15 6.73 -2.39 -0.02 2.13 16 15 N -0.71 -17.87 4.91 -452.05 -2.22 -20.09 16 16 C 0.54 14.37 7.39 87.66 0.65 15.02 16 17 O -0.58 -20.26 15.57 -3.03 -0.05 -20.30 16 18 C -0.17 -3.35 5.89 -11.54 -0.07 -3.41 16 19 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 20 C -0.12 -1.82 9.87 30.60 0.30 -1.51 16 21 C -0.06 -1.10 5.75 -11.54 -0.07 -1.17 16 22 H 0.14 2.99 7.67 -2.38 -0.02 2.97 16 23 C 0.00 0.03 6.80 24.83 0.17 0.20 16 24 C -0.22 -4.28 10.81 22.19 0.24 -4.04 16 25 C -0.23 -3.51 10.91 22.19 0.24 -3.27 16 26 C -0.04 -0.48 12.09 66.97 0.81 0.33 16 27 O -0.18 -3.29 10.36 -2.46 -0.03 -3.32 16 28 C -0.14 -4.96 5.17 29.39 0.15 -4.81 16 29 C 0.16 6.91 5.66 87.37 0.49 7.40 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H -0.01 -0.45 8.03 -2.39 -0.02 -0.47 16 32 H 0.05 2.43 6.33 -2.39 -0.02 2.42 16 33 H 0.05 1.87 7.31 -2.39 -0.02 1.85 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.20 7.48 -2.39 -0.02 2.18 16 36 H 0.09 2.11 8.05 -2.38 -0.02 2.09 16 37 H 0.41 7.90 8.59 -92.71 -0.80 7.11 16 38 H 0.13 1.56 7.97 -2.39 -0.02 1.54 16 39 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 42 H 0.24 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.05 1.91 7.67 -2.39 -0.02 1.90 16 44 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.04 1.53 8.06 -2.39 -0.02 1.51 16 46 H 0.04 1.63 7.99 -2.38 -0.02 1.61 16 Total: -1.00 -69.51 371.78 3.51 -66.00 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.18 Total: 20.85 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 4.94 Total: -3.70 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.57 Total: -106.13 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.07 Total: -23.62 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.51 3.51 -66.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052736132.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.513 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds