Wall clock time and date at job start Tue Mar 31 2020 12:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99723 * 2 1 4 4 H 1.48508 * 109.47057 * 264.53741 * 3 2 1 5 5 H 1.48498 * 109.47228 * 24.53535 * 3 2 1 6 6 H 1.48501 * 109.47116 * 144.53574 * 3 2 1 7 7 C 1.38811 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 337.55934 * 7 2 1 9 9 N 1.36935 * 119.99985 * 157.55558 * 7 2 1 10 10 C 1.47490 * 125.66382 * 341.54073 * 9 7 2 11 11 C 1.55021 * 104.90725 * 204.03255 * 10 9 7 12 12 C 1.54787 * 101.63557 * 323.76017 * 11 10 9 13 13 C 1.47182 * 125.66533 * 161.56771 * 9 7 2 14 14 C 1.52236 * 110.25840 * 276.10566 * 12 11 10 15 15 C 1.53172 * 109.65027 * 177.81903 * 14 12 11 16 16 C 1.53192 * 109.27709 * 60.16638 * 15 14 12 17 17 N 1.46930 * 108.92906 * 304.78193 * 16 15 14 18 18 C 1.34766 * 120.70286 * 234.18672 * 17 16 15 19 19 O 1.21278 * 120.00073 * 179.97438 * 18 17 16 20 20 C 1.50709 * 120.00157 * 359.97438 * 18 17 16 21 21 C 1.50699 * 109.46898 * 180.02562 * 20 18 17 22 22 C 1.41376 * 126.58045 * 269.70736 * 21 20 18 23 23 C 1.34516 * 106.84434 * 179.83701 * 22 21 20 24 24 O 1.34301 * 108.41494 * 0.43214 * 23 22 21 25 25 C 1.34303 * 109.48012 * 359.71954 * 24 23 22 26 26 C 1.47085 * 118.59229 * 54.16141 * 17 16 15 27 27 H 0.96999 * 120.00339 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.35292 * 322.89175 * 10 9 7 29 29 H 1.09000 * 110.35124 * 85.06405 * 10 9 7 30 30 H 1.09002 * 111.01440 * 81.72087 * 11 10 9 31 31 H 1.09005 * 111.01600 * 205.59259 * 11 10 9 32 32 H 1.09000 * 109.90730 * 297.81475 * 13 9 7 33 33 H 1.09002 * 109.91453 * 58.88863 * 13 9 7 34 34 H 1.09007 * 109.43501 * 297.86726 * 14 12 11 35 35 H 1.08996 * 109.44361 * 57.79324 * 14 12 11 36 36 H 1.08994 * 109.50118 * 180.10947 * 15 14 12 37 37 H 1.08997 * 109.49849 * 300.18561 * 15 14 12 38 38 H 1.09000 * 109.55967 * 64.61551 * 16 15 14 39 39 H 1.08992 * 109.55879 * 184.83581 * 16 15 14 40 40 H 1.08995 * 109.46400 * 300.00151 * 20 18 17 41 41 H 1.08993 * 109.46545 * 60.00150 * 20 18 17 42 42 H 1.08008 * 126.58100 * 0.02562 * 22 21 20 43 43 H 1.07997 * 125.79185 * 180.11680 * 23 22 21 44 44 H 1.08000 * 125.78750 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.57620 * 187.73591 * 26 17 16 46 46 H 1.08996 * 109.57438 * 67.34662 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6130 1.9798 -1.3938 5 1 1.3946 2.6832 0.5814 6 1 3.4852 1.4763 0.8123 7 6 2.0103 -1.2021 0.0005 8 1 1.5316 -2.1019 0.3580 9 7 3.3019 -1.2472 -0.4522 10 6 3.9502 -0.2331 -1.3046 11 6 5.0972 -0.9896 -2.0223 12 6 5.5697 -1.9630 -0.9154 13 6 4.2735 -2.3160 -0.1695 14 6 6.5535 -1.2663 0.0144 15 6 6.9699 -2.2242 1.1348 16 6 7.6382 -3.4590 0.5222 17 7 6.7232 -4.0589 -0.4586 18 6 6.3799 -5.3593 -0.3738 19 8 5.6233 -5.8412 -1.1900 20 6 6.9362 -6.2148 0.7353 21 6 6.4014 -7.6175 0.6040 22 6 5.2210 -8.1276 1.1917 23 6 5.1224 -9.4149 0.8140 24 8 6.1795 -9.7124 0.0409 25 6 6.9585 -8.6263 -0.0899 26 6 6.1895 -3.2098 -1.5345 27 1 -0.4850 0.8400 -0.0004 28 1 3.2407 0.1594 -2.0332 29 1 4.3512 0.5755 -0.6935 30 1 4.7231 -1.5372 -2.8873 31 1 5.8962 -0.3062 -2.3100 32 1 4.4648 -2.3696 0.9023 33 1 3.8886 -3.2715 -0.5259 34 1 7.4351 -0.9642 -0.5510 35 1 6.0810 -0.3850 0.4481 36 1 7.6726 -1.7224 1.8000 37 1 6.0887 -2.5289 1.6992 38 1 8.5632 -3.1650 0.0261 39 1 7.8590 -4.1818 1.3075 40 1 8.0240 -6.2333 0.6689 41 1 6.6379 -5.8003 1.6982 42 1 4.5293 -7.5866 1.8205 43 1 4.3304 -10.0952 1.0901 44 1 7.8764 -8.5719 -0.6564 45 1 5.4289 -3.7588 -2.0897 46 1 6.9975 -2.9209 -2.2066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054119400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:45 Heat of formation + Delta-G solvation = 11.607089 kcal Electronic energy + Delta-G solvation = -27647.271257 eV Core-core repulsion = 23925.428947 eV Total energy + Delta-G solvation = -3721.842310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.61409 -40.48105 -38.57083 -36.04254 -34.11908 -33.06923 -31.98566 -31.01245 -30.34014 -28.91940 -27.95100 -26.00699 -25.31809 -23.49670 -22.13604 -21.67279 -20.95040 -20.79447 -19.29237 -18.15867 -17.50555 -17.24436 -16.73377 -15.95418 -15.64026 -15.51584 -15.24117 -14.96906 -14.74765 -14.19465 -13.98604 -13.59855 -13.41594 -13.10871 -13.07495 -12.84918 -12.70005 -12.56313 -12.47155 -12.09305 -11.70821 -11.64193 -11.49851 -11.20551 -11.16325 -10.93608 -10.71668 -10.42327 -10.09750 -10.02974 -9.97656 -9.86411 -9.50853 -9.39965 -8.65139 -8.60092 -8.51586 -6.97768 -5.90097 -3.19262 1.70145 2.45014 2.69591 3.04701 3.13844 3.36235 3.48533 3.51265 4.53277 4.57132 4.58223 4.66421 4.73807 4.86241 4.90745 4.93282 4.99146 5.10740 5.20007 5.22267 5.29181 5.35880 5.45511 5.51843 5.59944 5.67814 5.74033 5.77095 5.80907 5.90745 5.92555 6.04918 6.06804 6.13081 6.19451 6.33338 6.40088 6.44994 6.51666 6.61961 6.74331 6.79233 6.85727 7.03050 7.43923 7.77494 8.25412 8.36227 8.89100 9.73944 10.24160 11.26441 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.003576 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.153010 B = 7827.936172 C = 8743.342526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.020 3.980 3 Si 0.884 3.116 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.609 5.609 10 C 0.113 3.887 11 C -0.120 4.120 12 C -0.087 4.087 13 C 0.152 3.848 14 C -0.102 4.102 15 C -0.139 4.139 16 C 0.109 3.891 17 N -0.611 5.611 18 C 0.515 3.485 19 O -0.529 6.529 20 C -0.069 4.069 21 C -0.161 4.161 22 C -0.197 4.197 23 C -0.045 4.045 24 O -0.178 6.178 25 C -0.031 4.031 26 C 0.131 3.869 27 H 0.262 0.738 28 H 0.057 0.943 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.032 0.968 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.147 0.853 43 H 0.201 0.799 44 H 0.198 0.802 45 H 0.094 0.906 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.862 -11.980 2.051 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.178 4.178 3 Si 0.714 3.286 4 H -0.213 1.213 5 H -0.232 1.232 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.335 5.335 10 C -0.012 4.012 11 C -0.159 4.159 12 C -0.088 4.088 13 C 0.027 3.973 14 C -0.139 4.139 15 C -0.177 4.177 16 C -0.014 4.014 17 N -0.345 5.345 18 C 0.303 3.697 19 O -0.405 6.405 20 C -0.109 4.109 21 C -0.163 4.163 22 C -0.216 4.216 23 C -0.112 4.112 24 O -0.074 6.074 25 C -0.099 4.099 26 C 0.009 3.991 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.121 0.879 42 H 0.165 0.835 43 H 0.218 0.782 44 H 0.215 0.785 45 H 0.113 0.887 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 20.256 -12.454 1.530 23.827 hybrid contribution 0.282 1.452 0.261 1.502 sum 20.538 -11.002 1.791 23.368 Atomic orbital electron populations 1.69854 1.05541 1.26463 1.53579 1.24981 0.95134 0.97311 1.00351 0.86953 0.79094 0.84833 0.77688 1.21267 1.23166 1.20390 1.18649 0.84512 0.95384 1.37988 0.89242 1.44828 1.09897 1.22144 1.56661 1.21949 0.93616 0.92454 0.93206 1.22761 0.98308 0.97675 0.97171 1.21439 0.96035 0.94790 0.96527 1.21300 0.87086 0.92396 0.96561 1.21359 0.98039 0.98376 0.96138 1.22006 1.01412 0.95857 0.98435 1.21737 0.92208 0.95911 0.91581 1.48138 1.47454 1.09209 1.29676 1.20522 0.81184 0.81762 0.86280 1.90727 1.35204 1.72322 1.42214 1.20024 1.01195 0.90713 0.98981 1.19805 0.97768 0.95363 1.03314 1.21720 0.99304 0.95239 1.05319 1.23954 0.92076 0.97727 0.97445 1.84044 1.30413 1.36991 1.55958 1.23717 0.98157 0.84584 1.03441 1.21510 0.98553 0.90403 0.88639 0.92795 0.92471 0.95834 0.90957 0.91442 0.95240 0.95026 0.92107 0.91066 0.90832 0.90614 0.91410 0.89965 0.88331 0.87899 0.83494 0.78199 0.78520 0.88728 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.73 13.97 55.49 0.78 -27.96 16 2 C 0.02 0.61 5.43 -17.43 -0.09 0.51 16 3 Si 0.88 22.93 24.27 -169.99 -4.13 18.80 16 4 H -0.29 -7.12 6.49 56.52 0.37 -6.75 16 5 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.28 -7.05 6.66 56.52 0.38 -6.67 16 7 C -0.24 -6.98 10.57 -15.06 -0.16 -7.14 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.61 -15.12 3.21 -170.23 -0.55 -15.67 16 10 C 0.11 2.47 4.39 -2.43 -0.01 2.46 16 11 C -0.12 -2.00 6.01 -24.72 -0.15 -2.15 16 12 C -0.09 -1.36 0.54 -153.93 -0.08 -1.44 16 13 C 0.15 3.12 6.13 -3.33 -0.02 3.10 16 14 C -0.10 -1.34 4.59 -27.03 -0.12 -1.46 16 15 C -0.14 -1.49 5.90 -26.54 -0.16 -1.65 16 16 C 0.11 0.97 6.32 -3.71 -0.02 0.94 16 17 N -0.61 -7.55 2.85 -173.13 -0.49 -8.04 16 18 C 0.51 7.07 7.69 -10.99 -0.08 6.98 16 19 O -0.53 -9.68 15.46 5.56 0.09 -9.59 16 20 C -0.07 -0.68 4.57 -29.03 -0.13 -0.82 16 21 C -0.16 -1.87 4.66 -104.75 -0.49 -2.36 16 22 C -0.20 -2.33 10.87 -39.70 -0.43 -2.76 16 23 C -0.04 -0.47 12.09 29.42 0.36 -0.12 16 24 O -0.18 -2.06 10.65 5.71 0.06 -2.00 16 25 C -0.03 -0.33 12.01 29.42 0.35 0.02 16 26 C 0.13 1.84 5.02 -4.04 -0.02 1.82 16 27 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 28 H 0.06 1.35 6.65 -51.93 -0.35 1.01 16 29 H 0.02 0.54 5.22 -51.93 -0.27 0.26 16 30 H 0.07 1.19 8.02 -51.93 -0.42 0.77 16 31 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 32 H 0.03 0.61 6.01 -51.93 -0.31 0.30 16 33 H 0.03 0.71 7.66 -51.93 -0.40 0.32 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.11 7.54 -51.93 -0.39 0.71 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.97 6.34 -51.93 -0.33 0.64 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.54 5.94 -51.93 -0.31 0.23 16 40 H 0.10 0.67 7.93 -51.93 -0.41 0.25 16 41 H 0.10 0.89 7.71 -51.93 -0.40 0.49 16 42 H 0.15 1.63 8.06 -52.48 -0.42 1.20 16 43 H 0.20 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.09 1.58 6.82 -51.93 -0.35 1.23 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -36.38 354.43 -7.10 -43.48 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.93 Total: -0.32 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -1.27 Total: -4.05 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.27 Total: -51.67 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.15 Total: -11.59 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.13 Total: 18.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.38 -7.10 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054119400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.091 kcal (2) G-P(sol) polarization free energy of solvation -36.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds