Wall clock time and date at job start Tue Mar 31 2020 12:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99723 * 2 1 4 4 H 1.48508 * 109.47057 * 264.53741 * 3 2 1 5 5 H 1.48498 * 109.47228 * 24.53535 * 3 2 1 6 6 H 1.48501 * 109.47116 * 144.53574 * 3 2 1 7 7 C 1.38811 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99854 * 337.55934 * 7 2 1 9 9 N 1.36935 * 119.99985 * 157.55558 * 7 2 1 10 10 C 1.47490 * 125.66382 * 341.54073 * 9 7 2 11 11 C 1.55021 * 104.90725 * 204.03255 * 10 9 7 12 12 C 1.54787 * 101.63557 * 323.76017 * 11 10 9 13 13 C 1.47182 * 125.66533 * 161.56771 * 9 7 2 14 14 C 1.52236 * 110.25840 * 276.10566 * 12 11 10 15 15 C 1.53172 * 109.65027 * 177.81903 * 14 12 11 16 16 C 1.53192 * 109.27709 * 60.16638 * 15 14 12 17 17 N 1.46930 * 108.92906 * 304.78193 * 16 15 14 18 18 C 1.34766 * 120.70286 * 234.18672 * 17 16 15 19 19 O 1.21278 * 120.00073 * 179.97438 * 18 17 16 20 20 C 1.50709 * 120.00157 * 359.97438 * 18 17 16 21 21 C 1.50699 * 109.46898 * 180.02562 * 20 18 17 22 22 C 1.41376 * 126.58045 * 269.70736 * 21 20 18 23 23 C 1.34516 * 106.84434 * 179.83701 * 22 21 20 24 24 O 1.34301 * 108.41494 * 0.43214 * 23 22 21 25 25 C 1.34303 * 109.48012 * 359.71954 * 24 23 22 26 26 C 1.47085 * 118.59229 * 54.16141 * 17 16 15 27 27 H 0.96999 * 120.00339 * 0.02562 * 1 2 3 28 28 H 1.09004 * 110.35292 * 322.89175 * 10 9 7 29 29 H 1.09000 * 110.35124 * 85.06405 * 10 9 7 30 30 H 1.09002 * 111.01440 * 81.72087 * 11 10 9 31 31 H 1.09005 * 111.01600 * 205.59259 * 11 10 9 32 32 H 1.09000 * 109.90730 * 297.81475 * 13 9 7 33 33 H 1.09002 * 109.91453 * 58.88863 * 13 9 7 34 34 H 1.09007 * 109.43501 * 297.86726 * 14 12 11 35 35 H 1.08996 * 109.44361 * 57.79324 * 14 12 11 36 36 H 1.08994 * 109.50118 * 180.10947 * 15 14 12 37 37 H 1.08997 * 109.49849 * 300.18561 * 15 14 12 38 38 H 1.09000 * 109.55967 * 64.61551 * 16 15 14 39 39 H 1.08992 * 109.55879 * 184.83581 * 16 15 14 40 40 H 1.08995 * 109.46400 * 300.00151 * 20 18 17 41 41 H 1.08993 * 109.46545 * 60.00150 * 20 18 17 42 42 H 1.08008 * 126.58100 * 0.02562 * 22 21 20 43 43 H 1.07997 * 125.79185 * 180.11680 * 23 22 21 44 44 H 1.08000 * 125.78750 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.57620 * 187.73591 * 26 17 16 46 46 H 1.08996 * 109.57438 * 67.34662 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6130 1.9798 -1.3938 5 1 1.3946 2.6832 0.5814 6 1 3.4852 1.4763 0.8123 7 6 2.0103 -1.2021 0.0005 8 1 1.5316 -2.1019 0.3580 9 7 3.3019 -1.2472 -0.4522 10 6 3.9502 -0.2331 -1.3046 11 6 5.0972 -0.9896 -2.0223 12 6 5.5697 -1.9630 -0.9154 13 6 4.2735 -2.3160 -0.1695 14 6 6.5535 -1.2663 0.0144 15 6 6.9699 -2.2242 1.1348 16 6 7.6382 -3.4590 0.5222 17 7 6.7232 -4.0589 -0.4586 18 6 6.3799 -5.3593 -0.3738 19 8 5.6233 -5.8412 -1.1900 20 6 6.9362 -6.2148 0.7353 21 6 6.4014 -7.6175 0.6040 22 6 5.2210 -8.1276 1.1917 23 6 5.1224 -9.4149 0.8140 24 8 6.1795 -9.7124 0.0409 25 6 6.9585 -8.6263 -0.0899 26 6 6.1895 -3.2098 -1.5345 27 1 -0.4850 0.8400 -0.0004 28 1 3.2407 0.1594 -2.0332 29 1 4.3512 0.5755 -0.6935 30 1 4.7231 -1.5372 -2.8873 31 1 5.8962 -0.3062 -2.3100 32 1 4.4648 -2.3696 0.9023 33 1 3.8886 -3.2715 -0.5259 34 1 7.4351 -0.9642 -0.5510 35 1 6.0810 -0.3850 0.4481 36 1 7.6726 -1.7224 1.8000 37 1 6.0887 -2.5289 1.6992 38 1 8.5632 -3.1650 0.0261 39 1 7.8590 -4.1818 1.3075 40 1 8.0240 -6.2333 0.6689 41 1 6.6379 -5.8003 1.6982 42 1 4.5293 -7.5866 1.8205 43 1 4.3304 -10.0952 1.0901 44 1 7.8764 -8.5719 -0.6564 45 1 5.4289 -3.7588 -2.0897 46 1 6.9975 -2.9209 -2.2066 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054119400.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:44 Heat of formation + Delta-G solvation = -13.828536 kcal Electronic energy + Delta-G solvation = -27648.374229 eV Core-core repulsion = 23925.428947 eV Total energy + Delta-G solvation = -3722.945281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.43105 -41.60640 -39.86622 -37.37411 -35.06831 -34.75232 -33.29880 -32.48095 -31.35661 -30.38230 -28.95647 -27.66435 -26.31100 -25.05230 -23.20780 -22.70976 -22.50258 -21.77509 -20.34604 -19.32416 -18.91520 -18.35207 -18.07233 -17.24176 -16.85795 -16.78548 -16.51632 -16.24462 -15.63821 -15.53249 -15.35748 -14.95298 -14.50654 -14.39398 -14.33378 -14.07529 -13.75172 -13.73098 -13.65605 -13.45855 -13.30813 -12.98080 -12.75075 -12.61147 -12.42383 -12.21938 -12.09814 -12.01237 -11.76474 -11.45430 -11.35025 -11.21500 -10.97655 -10.84410 -10.45962 -9.54128 -9.40808 -9.09007 -8.22785 -5.49708 0.89401 1.26835 1.34787 1.45363 1.56852 1.70218 2.20138 2.34127 2.37811 2.98343 3.28728 3.53190 3.65955 3.79106 3.82269 3.96032 3.96697 4.11043 4.15635 4.17572 4.25341 4.35869 4.46141 4.54035 4.58255 4.62015 4.69413 4.71675 4.78852 4.80400 4.84074 4.93643 4.97667 5.01410 5.11472 5.11953 5.15786 5.21816 5.31401 5.47378 5.50706 5.57323 5.61196 5.62369 6.04498 6.20785 6.50176 6.72192 7.26227 7.49241 8.06611 8.97805 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017560 B = 0.003576 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.153010 B = 7827.936172 C = 8743.342526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.038 4.038 3 Si 0.956 3.044 4 H -0.266 1.266 5 H -0.306 1.306 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.044 0.956 9 N -0.628 5.628 10 C 0.104 3.896 11 C -0.110 4.110 12 C -0.073 4.073 13 C 0.154 3.846 14 C -0.100 4.100 15 C -0.138 4.138 16 C 0.106 3.894 17 N -0.610 5.610 18 C 0.507 3.493 19 O -0.588 6.588 20 C -0.060 4.060 21 C -0.183 4.183 22 C -0.229 4.229 23 C -0.047 4.047 24 O -0.190 6.190 25 C -0.035 4.035 26 C 0.136 3.864 27 H 0.264 0.736 28 H 0.034 0.966 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.026 0.974 33 H -0.004 1.004 34 H 0.100 0.900 35 H 0.047 0.953 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.141 0.859 41 H 0.115 0.885 42 H 0.143 0.857 43 H 0.230 0.770 44 H 0.229 0.771 45 H 0.057 0.943 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.947 -10.914 2.009 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.232 4.232 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.234 1.234 6 H -0.190 1.190 7 C -0.371 4.371 8 H 0.062 0.938 9 N -0.355 5.355 10 C -0.020 4.020 11 C -0.148 4.148 12 C -0.074 4.074 13 C 0.029 3.971 14 C -0.138 4.138 15 C -0.175 4.175 16 C -0.015 4.015 17 N -0.342 5.342 18 C 0.297 3.703 19 O -0.468 6.468 20 C -0.100 4.100 21 C -0.185 4.185 22 C -0.248 4.248 23 C -0.113 4.113 24 O -0.086 6.086 25 C -0.102 4.102 26 C 0.013 3.987 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.044 0.956 33 H 0.014 0.986 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.063 0.937 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.159 0.841 41 H 0.133 0.867 42 H 0.161 0.839 43 H 0.246 0.754 44 H 0.245 0.755 45 H 0.075 0.925 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 25.409 -11.378 1.502 27.881 hybrid contribution -1.406 1.018 0.286 1.759 sum 24.004 -10.359 1.788 26.205 Atomic orbital electron populations 1.69997 1.07445 1.27470 1.55666 1.25706 0.95870 1.01116 1.00537 0.85794 0.77794 0.79287 0.78745 1.19155 1.23416 1.18955 1.18529 0.86778 0.94109 1.37718 0.93801 1.44941 1.09265 1.23938 1.57326 1.22111 0.94728 0.92533 0.92661 1.22767 0.97455 0.97927 0.96667 1.21393 0.94082 0.95770 0.96181 1.21374 0.88882 0.89759 0.97050 1.21396 0.98245 0.97602 0.96529 1.22011 1.01128 0.96471 0.97935 1.22073 0.92066 0.95583 0.91751 1.48276 1.47389 1.08742 1.29806 1.21261 0.80291 0.82394 0.86369 1.90703 1.37839 1.73597 1.44621 1.20092 1.03356 0.88869 0.97653 1.20144 0.97925 0.96585 1.03834 1.21979 1.00165 0.96243 1.06454 1.24527 0.92290 0.97958 0.96563 1.84047 1.30779 1.37619 1.56107 1.24355 0.98827 0.84017 1.02985 1.21338 0.98759 0.89226 0.89357 0.92739 0.94728 0.95137 0.91289 0.86884 0.95622 0.98556 0.88157 0.93416 0.87610 0.93724 0.87914 0.87133 0.84147 0.86667 0.83903 0.75420 0.75493 0.92489 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.29 13.97 21.65 0.30 -62.98 16 2 C -0.04 -2.35 5.43 84.86 0.46 -1.89 16 3 Si 0.96 48.13 24.27 68.60 1.66 49.79 16 4 H -0.27 -12.46 6.49 99.48 0.65 -11.82 16 5 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 6 H -0.26 -12.61 6.66 99.48 0.66 -11.95 16 7 C -0.24 -15.06 10.57 84.03 0.89 -14.17 16 8 H 0.04 3.02 8.06 -2.91 -0.02 3.00 16 9 N -0.63 -32.22 3.21 -692.48 -2.22 -34.44 16 10 C 0.10 4.46 4.39 86.88 0.38 4.84 16 11 C -0.11 -3.37 6.01 31.90 0.19 -3.18 16 12 C -0.07 -2.14 0.54 -51.80 -0.03 -2.17 16 13 C 0.15 6.54 6.13 86.47 0.53 7.07 16 14 C -0.10 -2.22 4.59 30.40 0.14 -2.08 16 15 C -0.14 -2.39 5.90 30.72 0.18 -2.21 16 16 C 0.11 1.35 6.32 86.36 0.55 1.89 16 17 N -0.61 -13.46 2.85 -820.06 -2.34 -15.80 16 18 C 0.51 13.37 7.69 87.66 0.67 14.04 16 19 O -0.59 -22.12 15.46 -3.02 -0.05 -22.17 16 20 C -0.06 -1.05 4.57 29.10 0.13 -0.92 16 21 C -0.18 -4.10 4.66 -19.94 -0.09 -4.20 16 22 C -0.23 -5.55 10.87 22.19 0.24 -5.31 16 23 C -0.05 -0.98 12.09 66.97 0.81 -0.17 16 24 O -0.19 -4.26 10.65 -2.47 -0.03 -4.29 16 25 C -0.03 -0.69 12.01 66.97 0.80 0.11 16 26 C 0.14 3.54 5.02 86.06 0.43 3.97 16 27 H 0.26 16.37 8.31 -92.71 -0.77 15.59 16 28 H 0.03 1.62 6.65 -2.39 -0.02 1.61 16 29 H 0.03 1.30 5.22 -2.39 -0.01 1.29 16 30 H 0.07 2.17 8.02 -2.39 -0.02 2.15 16 31 H 0.11 2.52 8.01 -2.38 -0.02 2.50 16 32 H 0.03 1.11 6.01 -2.39 -0.01 1.09 16 33 H 0.00 -0.18 7.66 -2.39 -0.02 -0.20 16 34 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.05 1.31 7.54 -2.39 -0.02 1.29 16 36 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.06 6.34 -2.39 -0.02 1.05 16 38 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.83 5.94 -2.39 -0.01 0.81 16 40 H 0.14 1.23 7.93 -2.39 -0.02 1.21 16 41 H 0.12 1.71 7.71 -2.39 -0.02 1.69 16 42 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 43 H 0.23 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.23 2.75 8.06 -2.91 -0.02 2.72 16 45 H 0.06 1.94 6.82 -2.39 -0.02 1.92 16 46 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -87.79 354.43 4.49 -83.30 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.87 Total: 10.98 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.29 Total: -4.38 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -4.26 Total: -113.23 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.07 Total: -26.46 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 1.66 Total: 49.79 kcal Total: -87.79 4.49 -83.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054119400.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.470 kcal (2) G-P(sol) polarization free energy of solvation -87.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds