Wall clock time and date at job start Tue Mar 31 2020 12:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99439 * 2 1 4 4 H 1.48500 * 109.47123 * 264.53951 * 3 2 1 5 5 H 1.48502 * 109.47311 * 24.53637 * 3 2 1 6 6 H 1.48500 * 109.47167 * 144.54194 * 3 2 1 7 7 C 1.38808 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00045 * 337.55952 * 7 2 1 9 9 N 1.36936 * 120.00006 * 157.55062 * 7 2 1 10 10 C 1.47488 * 125.66531 * 341.54119 * 9 7 2 11 11 C 1.55021 * 104.90483 * 204.04517 * 10 9 7 12 12 C 1.54478 * 101.53254 * 323.65363 * 11 10 9 13 13 C 1.47183 * 125.66066 * 161.56868 * 9 7 2 14 14 C 1.52242 * 110.29553 * 153.34073 * 12 11 10 15 15 C 1.53169 * 109.61591 * 181.99609 * 14 12 11 16 16 C 1.53187 * 109.26809 * 299.83175 * 15 14 12 17 17 N 1.46931 * 108.93640 * 55.22125 * 16 15 14 18 18 C 1.34770 * 120.70161 * 125.86533 * 17 16 15 19 19 O 1.21283 * 119.99890 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00185 * 0.02562 * 18 17 16 21 21 C 1.50701 * 109.47023 * 179.97438 * 20 18 17 22 22 C 1.41379 * 126.58011 * 269.70961 * 21 20 18 23 23 C 1.34514 * 106.84175 * 179.83497 * 22 21 20 24 24 O 1.34302 * 108.42029 * 0.43239 * 23 22 21 25 25 C 1.34311 * 109.47758 * 359.71950 * 24 23 22 26 26 C 1.47085 * 118.59530 * 305.84616 * 17 16 15 27 27 H 0.96999 * 120.00320 * 359.97438 * 1 2 3 28 28 H 1.09008 * 110.34857 * 322.89966 * 10 9 7 29 29 H 1.09000 * 110.35712 * 85.07407 * 10 9 7 30 30 H 1.08999 * 111.01431 * 205.59037 * 11 10 9 31 31 H 1.09002 * 111.01952 * 81.71593 * 11 10 9 32 32 H 1.09005 * 109.90792 * 59.07491 * 13 9 7 33 33 H 1.08993 * 109.91931 * 297.79896 * 13 9 7 34 34 H 1.09004 * 109.43790 * 61.95962 * 14 12 11 35 35 H 1.08999 * 109.44039 * 302.03380 * 14 12 11 36 36 H 1.08992 * 109.50133 * 59.77054 * 15 14 12 37 37 H 1.09002 * 109.50328 * 179.89211 * 15 14 12 38 38 H 1.09005 * 109.55856 * 175.05325 * 16 15 14 39 39 H 1.09002 * 109.56217 * 295.38181 * 16 15 14 40 40 H 1.08996 * 109.46752 * 299.99718 * 20 18 17 41 41 H 1.08999 * 109.47038 * 60.00076 * 20 18 17 42 42 H 1.07998 * 126.57846 * 0.02562 * 22 21 20 43 43 H 1.07996 * 125.79287 * 180.11886 * 23 22 21 44 44 H 1.07998 * 125.79066 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.57443 * 172.24571 * 26 17 16 46 46 H 1.08990 * 109.58094 * 292.64502 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.6129 1.9799 -1.3937 5 1 1.3944 2.6833 0.5814 6 1 3.4852 1.4764 0.8122 7 6 2.0103 -1.2021 0.0005 8 1 1.5318 -2.1018 0.3579 9 7 3.3019 -1.2471 -0.4523 10 6 3.9501 -0.2330 -1.3048 11 6 5.0969 -0.9897 -2.0227 12 6 5.5685 -1.9582 -0.9155 13 6 4.2735 -2.3158 -0.1695 14 6 6.1951 -3.2009 -1.5326 15 6 6.6116 -4.1717 -0.4235 16 6 7.6337 -3.4875 0.4896 17 7 7.0605 -2.2302 0.9891 18 6 7.0062 -1.9762 2.3116 19 8 6.5300 -0.9344 2.7099 20 6 7.5374 -2.9867 3.2954 21 6 7.3598 -2.4640 4.6976 22 6 8.2869 -1.6891 5.4316 23 6 7.7255 -1.4400 6.6283 24 8 6.5183 -2.0277 6.6614 25 6 6.2912 -2.6502 5.4932 26 6 6.5476 -1.2545 0.0153 27 1 -0.4850 0.8400 0.0004 28 1 3.2405 0.1595 -2.0333 29 1 4.3513 0.5756 -0.6938 30 1 5.8959 -0.3064 -2.3106 31 1 4.7226 -1.5373 -2.8877 32 1 3.8899 -3.2708 -0.5289 33 1 4.4652 -2.3694 0.9021 34 1 7.0724 -2.9148 -2.1128 35 1 5.4703 -3.6861 -2.1863 36 1 5.7355 -4.4556 0.1594 37 1 7.0581 -5.0614 -0.8674 38 1 7.8675 -4.1412 1.3299 39 1 8.5424 -3.2758 -0.0740 40 1 6.9912 -3.9235 3.1845 41 1 8.5965 -3.1587 3.1035 42 1 9.2580 -1.3578 5.0948 43 1 8.1719 -0.8689 7.4289 44 1 5.4014 -3.2057 5.2360 45 1 6.0365 -0.4479 0.5411 46 1 7.3756 -0.8477 -0.5650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054119407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:48 Heat of formation + Delta-G solvation = 11.692280 kcal Electronic energy + Delta-G solvation = -27961.117372 eV Core-core repulsion = 24239.278756 eV Total energy + Delta-G solvation = -3721.838616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.55170 -40.46484 -38.47422 -36.03653 -34.04632 -33.11276 -32.04826 -30.84550 -30.29092 -28.79375 -27.98939 -25.97010 -25.20781 -23.75426 -21.87508 -21.63121 -20.88176 -20.79570 -19.30331 -18.16052 -17.43590 -17.19391 -16.70009 -15.91540 -15.67898 -15.46730 -15.15232 -14.96214 -14.64068 -13.95698 -13.89007 -13.70636 -13.34102 -13.14300 -12.85230 -12.81874 -12.70757 -12.63242 -12.46752 -12.05347 -11.87711 -11.59605 -11.52225 -11.21436 -10.99815 -10.90785 -10.73818 -10.39093 -10.13098 -9.97430 -9.90960 -9.81283 -9.45077 -9.32942 -8.59589 -8.53144 -8.49564 -6.94575 -5.86726 -3.15751 1.77710 2.48549 2.78609 3.12204 3.20189 3.41624 3.56798 3.64018 4.58328 4.60635 4.64217 4.71936 4.75406 4.88895 4.89291 4.96158 5.03665 5.10861 5.24373 5.28095 5.30424 5.34918 5.46770 5.49347 5.59583 5.65198 5.75400 5.79197 5.81918 5.95280 5.97189 6.03304 6.13291 6.16720 6.19839 6.29807 6.43346 6.45803 6.53486 6.62437 6.74534 6.78204 6.86813 7.09766 7.51189 7.80040 8.35294 8.38806 8.91885 9.77886 10.27452 11.29643 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.004816 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.692506 B = 5812.466831 C = 7377.659230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.238 4.238 8 H 0.090 0.910 9 N -0.608 5.608 10 C 0.110 3.890 11 C -0.120 4.120 12 C -0.087 4.087 13 C 0.154 3.846 14 C -0.100 4.100 15 C -0.137 4.137 16 C 0.108 3.892 17 N -0.612 5.612 18 C 0.512 3.488 19 O -0.522 6.522 20 C -0.067 4.067 21 C -0.166 4.166 22 C -0.199 4.199 23 C -0.047 4.047 24 O -0.176 6.176 25 C -0.021 4.021 26 C 0.130 3.870 27 H 0.262 0.738 28 H 0.058 0.942 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.144 0.856 43 H 0.200 0.800 44 H 0.201 0.799 45 H 0.096 0.904 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.623 -9.740 3.673 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.231 1.231 6 H -0.199 1.199 7 C -0.365 4.365 8 H 0.108 0.892 9 N -0.334 5.334 10 C -0.015 4.015 11 C -0.159 4.159 12 C -0.089 4.089 13 C 0.029 3.971 14 C -0.138 4.138 15 C -0.176 4.176 16 C -0.015 4.015 17 N -0.346 5.346 18 C 0.299 3.701 19 O -0.397 6.397 20 C -0.107 4.107 21 C -0.168 4.168 22 C -0.219 4.219 23 C -0.114 4.114 24 O -0.072 6.072 25 C -0.089 4.089 26 C 0.008 3.992 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.048 0.952 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.162 0.838 43 H 0.216 0.784 44 H 0.218 0.782 45 H 0.114 0.886 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.922 -9.073 4.206 23.189 hybrid contribution 0.553 1.055 -0.216 1.211 sum 21.476 -8.018 3.990 23.268 Atomic orbital electron populations 1.69840 1.05533 1.26472 1.53702 1.24954 0.95123 0.97294 1.00203 0.87031 0.79520 0.84790 0.77695 1.21314 1.23115 1.19949 1.18610 0.84335 0.95358 1.38170 0.89232 1.44829 1.09839 1.22182 1.56594 1.21980 0.93727 0.92541 0.93246 1.22711 0.98247 0.97824 0.97074 1.21386 0.95857 0.95678 0.95943 1.21232 0.87035 0.92281 0.96584 1.21377 1.00345 0.94941 0.97109 1.21969 0.99665 0.98232 0.97692 1.21724 0.96109 0.85223 0.98422 1.48113 1.61400 1.19467 1.05614 1.20554 0.79068 0.88079 0.82367 1.90768 1.44142 1.26783 1.77980 1.20002 1.03007 0.98156 0.89507 1.19782 0.96079 1.04673 0.96244 1.21616 1.01722 1.03749 0.94766 1.23914 0.84725 1.02303 1.00473 1.84067 1.33497 1.53805 1.35801 1.23859 1.00297 1.00830 0.83931 1.21480 0.96017 0.91788 0.89963 0.92827 0.92420 0.95833 0.91568 0.90734 0.95169 0.95390 0.91989 0.91202 0.90918 0.90848 0.89987 0.91479 0.88145 0.88260 0.83824 0.78365 0.78229 0.88556 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.15 13.97 55.49 0.78 -28.38 16 2 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 3 Si 0.88 24.02 24.27 -169.99 -4.13 19.89 16 4 H -0.29 -7.40 6.49 56.52 0.37 -7.04 16 5 H -0.30 -8.36 7.11 56.52 0.40 -7.96 16 6 H -0.27 -7.65 6.66 56.52 0.38 -7.27 16 7 C -0.24 -7.05 10.57 -15.06 -0.16 -7.21 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -15.34 3.21 -170.23 -0.55 -15.88 16 10 C 0.11 2.48 4.40 -2.43 -0.01 2.47 16 11 C -0.12 -1.99 5.99 -24.89 -0.15 -2.14 16 12 C -0.09 -1.37 0.54 -154.12 -0.08 -1.45 16 13 C 0.15 3.14 5.42 -3.32 -0.02 3.12 16 14 C -0.10 -1.15 4.52 -27.03 -0.12 -1.28 16 15 C -0.14 -1.31 5.92 -26.55 -0.16 -1.47 16 16 C 0.11 0.97 6.32 -3.71 -0.02 0.95 16 17 N -0.61 -8.20 2.59 -173.17 -0.45 -8.65 16 18 C 0.51 7.80 7.69 -10.99 -0.08 7.71 16 19 O -0.52 -10.81 15.46 5.56 0.09 -10.72 16 20 C -0.07 -0.72 4.56 -29.03 -0.13 -0.85 16 21 C -0.17 -2.12 4.66 -104.74 -0.49 -2.60 16 22 C -0.20 -2.36 10.87 -39.70 -0.43 -2.79 16 23 C -0.05 -0.52 12.09 29.42 0.36 -0.17 16 24 O -0.18 -2.33 10.65 5.69 0.06 -2.27 16 25 C -0.02 -0.27 12.01 29.42 0.35 0.08 16 26 C 0.13 2.03 4.88 -4.07 -0.02 2.01 16 27 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 28 H 0.06 1.38 6.65 -51.92 -0.35 1.04 16 29 H 0.02 0.57 5.33 -51.93 -0.28 0.30 16 30 H 0.07 0.93 7.98 -51.93 -0.41 0.52 16 31 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 32 H 0.03 0.61 7.61 -51.93 -0.40 0.21 16 33 H 0.03 0.62 7.55 -51.93 -0.39 0.23 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.07 0.81 7.28 -51.93 -0.38 0.43 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.54 5.94 -51.93 -0.31 0.23 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.87 7.70 -51.93 -0.40 0.47 16 41 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 42 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.20 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.20 2.13 8.06 -52.49 -0.42 1.71 16 45 H 0.10 1.94 6.58 -51.93 -0.34 1.60 16 46 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -37.67 356.04 -7.18 -44.84 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -7.08 Total: -1.18 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.26 Total: -3.03 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.22 Total: -52.91 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.15 Total: -12.99 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.13 Total: 19.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -37.67 -7.18 -44.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054119407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.537 kcal (2) G-P(sol) polarization free energy of solvation -37.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds