Wall clock time and date at job start Tue Mar 31 2020 12:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99439 * 2 1 4 4 H 1.48500 * 109.47123 * 264.53951 * 3 2 1 5 5 H 1.48502 * 109.47311 * 24.53637 * 3 2 1 6 6 H 1.48500 * 109.47167 * 144.54194 * 3 2 1 7 7 C 1.38808 * 120.00476 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00045 * 337.55952 * 7 2 1 9 9 N 1.36936 * 120.00006 * 157.55062 * 7 2 1 10 10 C 1.47488 * 125.66531 * 341.54119 * 9 7 2 11 11 C 1.55021 * 104.90483 * 204.04517 * 10 9 7 12 12 C 1.54478 * 101.53254 * 323.65363 * 11 10 9 13 13 C 1.47183 * 125.66066 * 161.56868 * 9 7 2 14 14 C 1.52242 * 110.29553 * 153.34073 * 12 11 10 15 15 C 1.53169 * 109.61591 * 181.99609 * 14 12 11 16 16 C 1.53187 * 109.26809 * 299.83175 * 15 14 12 17 17 N 1.46931 * 108.93640 * 55.22125 * 16 15 14 18 18 C 1.34770 * 120.70161 * 125.86533 * 17 16 15 19 19 O 1.21283 * 119.99890 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00185 * 0.02562 * 18 17 16 21 21 C 1.50701 * 109.47023 * 179.97438 * 20 18 17 22 22 C 1.41379 * 126.58011 * 269.70961 * 21 20 18 23 23 C 1.34514 * 106.84175 * 179.83497 * 22 21 20 24 24 O 1.34302 * 108.42029 * 0.43239 * 23 22 21 25 25 C 1.34311 * 109.47758 * 359.71950 * 24 23 22 26 26 C 1.47085 * 118.59530 * 305.84616 * 17 16 15 27 27 H 0.96999 * 120.00320 * 359.97438 * 1 2 3 28 28 H 1.09008 * 110.34857 * 322.89966 * 10 9 7 29 29 H 1.09000 * 110.35712 * 85.07407 * 10 9 7 30 30 H 1.08999 * 111.01431 * 205.59037 * 11 10 9 31 31 H 1.09002 * 111.01952 * 81.71593 * 11 10 9 32 32 H 1.09005 * 109.90792 * 59.07491 * 13 9 7 33 33 H 1.08993 * 109.91931 * 297.79896 * 13 9 7 34 34 H 1.09004 * 109.43790 * 61.95962 * 14 12 11 35 35 H 1.08999 * 109.44039 * 302.03380 * 14 12 11 36 36 H 1.08992 * 109.50133 * 59.77054 * 15 14 12 37 37 H 1.09002 * 109.50328 * 179.89211 * 15 14 12 38 38 H 1.09005 * 109.55856 * 175.05325 * 16 15 14 39 39 H 1.09002 * 109.56217 * 295.38181 * 16 15 14 40 40 H 1.08996 * 109.46752 * 299.99718 * 20 18 17 41 41 H 1.08999 * 109.47038 * 60.00076 * 20 18 17 42 42 H 1.07998 * 126.57846 * 0.02562 * 22 21 20 43 43 H 1.07996 * 125.79287 * 180.11886 * 23 22 21 44 44 H 1.07998 * 125.79066 * 180.02562 * 25 24 23 45 45 H 1.08997 * 109.57443 * 172.24571 * 26 17 16 46 46 H 1.08990 * 109.58094 * 292.64502 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.6129 1.9799 -1.3937 5 1 1.3944 2.6833 0.5814 6 1 3.4852 1.4764 0.8122 7 6 2.0103 -1.2021 0.0005 8 1 1.5318 -2.1018 0.3579 9 7 3.3019 -1.2471 -0.4523 10 6 3.9501 -0.2330 -1.3048 11 6 5.0969 -0.9897 -2.0227 12 6 5.5685 -1.9582 -0.9155 13 6 4.2735 -2.3158 -0.1695 14 6 6.1951 -3.2009 -1.5326 15 6 6.6116 -4.1717 -0.4235 16 6 7.6337 -3.4875 0.4896 17 7 7.0605 -2.2302 0.9891 18 6 7.0062 -1.9762 2.3116 19 8 6.5300 -0.9344 2.7099 20 6 7.5374 -2.9867 3.2954 21 6 7.3598 -2.4640 4.6976 22 6 8.2869 -1.6891 5.4316 23 6 7.7255 -1.4400 6.6283 24 8 6.5183 -2.0277 6.6614 25 6 6.2912 -2.6502 5.4932 26 6 6.5476 -1.2545 0.0153 27 1 -0.4850 0.8400 0.0004 28 1 3.2405 0.1595 -2.0333 29 1 4.3513 0.5756 -0.6938 30 1 5.8959 -0.3064 -2.3106 31 1 4.7226 -1.5373 -2.8877 32 1 3.8899 -3.2708 -0.5289 33 1 4.4652 -2.3694 0.9021 34 1 7.0724 -2.9148 -2.1128 35 1 5.4703 -3.6861 -2.1863 36 1 5.7355 -4.4556 0.1594 37 1 7.0581 -5.0614 -0.8674 38 1 7.8675 -4.1412 1.3299 39 1 8.5424 -3.2758 -0.0740 40 1 6.9912 -3.9235 3.1845 41 1 8.5965 -3.1587 3.1035 42 1 9.2580 -1.3578 5.0948 43 1 8.1719 -0.8689 7.4289 44 1 5.4014 -3.2057 5.2360 45 1 6.0365 -0.4479 0.5411 46 1 7.3756 -0.8477 -0.5650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054119407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:47 Heat of formation + Delta-G solvation = -14.965132 kcal Electronic energy + Delta-G solvation = -27962.273324 eV Core-core repulsion = 24239.278756 eV Total energy + Delta-G solvation = -3722.994568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.46055 -41.63920 -39.82790 -37.40756 -35.09338 -34.77217 -33.46437 -32.32844 -31.35615 -30.26440 -29.06932 -27.66029 -26.20471 -25.28878 -23.14258 -22.53299 -22.50557 -21.88306 -20.40122 -19.33327 -18.92347 -18.37508 -18.09913 -17.25888 -17.03883 -16.76399 -16.53218 -16.20082 -15.52415 -15.49465 -15.33099 -15.05031 -14.65067 -14.37450 -14.07971 -13.96575 -13.84767 -13.79261 -13.68108 -13.55313 -13.29138 -13.14163 -12.87788 -12.63299 -12.45961 -12.20804 -12.04250 -11.92413 -11.74517 -11.63683 -11.34994 -11.10875 -10.98530 -10.85495 -10.47324 -9.56435 -9.44239 -9.09650 -8.25625 -5.49585 0.85492 1.17820 1.29882 1.39783 1.55877 1.68963 2.19026 2.31784 2.32780 2.99290 3.30377 3.55395 3.65161 3.77420 3.81248 3.92546 3.97074 4.12482 4.14043 4.18621 4.22940 4.36897 4.40983 4.52546 4.56951 4.65611 4.72522 4.75228 4.78493 4.80194 4.84309 4.92972 4.97282 5.08803 5.09379 5.12854 5.20250 5.22068 5.27795 5.47286 5.50747 5.58640 5.60684 5.62944 6.03023 6.18892 6.49585 6.72001 7.26368 7.48789 8.06611 8.94769 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.004816 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.692506 B = 5812.466831 C = 7377.659230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.031 4.031 3 Si 0.941 3.059 4 H -0.261 1.261 5 H -0.305 1.305 6 H -0.291 1.291 7 C -0.232 4.232 8 H 0.058 0.942 9 N -0.628 5.628 10 C 0.100 3.900 11 C -0.106 4.106 12 C -0.074 4.074 13 C 0.154 3.846 14 C -0.095 4.095 15 C -0.135 4.135 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.503 3.497 19 O -0.592 6.592 20 C -0.057 4.057 21 C -0.178 4.178 22 C -0.217 4.217 23 C -0.050 4.050 24 O -0.195 6.195 25 C -0.051 4.051 26 C 0.131 3.869 27 H 0.263 0.737 28 H 0.039 0.961 29 H 0.008 0.992 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.003 0.997 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.048 0.952 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.137 0.863 42 H 0.162 0.838 43 H 0.234 0.766 44 H 0.209 0.791 45 H 0.041 0.959 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.956 -11.204 1.945 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.226 4.226 3 Si 0.770 3.230 4 H -0.187 1.187 5 H -0.234 1.234 6 H -0.218 1.218 7 C -0.361 4.361 8 H 0.076 0.924 9 N -0.355 5.355 10 C -0.025 4.025 11 C -0.144 4.144 12 C -0.075 4.075 13 C 0.030 3.970 14 C -0.133 4.133 15 C -0.173 4.173 16 C -0.019 4.019 17 N -0.341 5.341 18 C 0.293 3.707 19 O -0.472 6.472 20 C -0.097 4.097 21 C -0.180 4.180 22 C -0.236 4.236 23 C -0.116 4.116 24 O -0.091 6.091 25 C -0.118 4.118 26 C 0.008 3.992 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.051 0.949 33 H 0.021 0.979 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.155 0.845 42 H 0.180 0.820 43 H 0.251 0.749 44 H 0.225 0.775 45 H 0.059 0.941 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 25.312 -10.593 2.425 27.546 hybrid contribution -0.800 1.430 0.356 1.677 sum 24.512 -9.163 2.782 26.316 Atomic orbital electron populations 1.69940 1.06839 1.27138 1.56160 1.25504 0.95750 1.00129 1.01194 0.86032 0.77260 0.81114 0.78553 1.18658 1.23355 1.21754 1.18604 0.86448 0.94258 1.36808 0.92377 1.45030 1.09331 1.23987 1.57154 1.22094 0.95283 0.92443 0.92633 1.22718 0.96719 0.97966 0.97024 1.21354 0.93473 0.97690 0.95024 1.21375 0.88736 0.90954 0.95953 1.21395 1.01253 0.92884 0.97757 1.21991 0.99218 0.99142 0.96962 1.22145 0.96583 0.83332 0.99830 1.48265 1.60453 1.20554 1.04823 1.21375 0.78041 0.87890 0.83441 1.90740 1.47392 1.29866 1.79208 1.20092 1.05289 0.97293 0.86996 1.20177 0.96093 1.04564 0.97149 1.21975 1.02599 1.03966 0.95036 1.24701 0.83856 1.01574 1.01487 1.84050 1.34599 1.54273 1.36164 1.24217 1.01205 1.01961 0.84423 1.21323 0.96652 0.91159 0.90087 0.92814 0.94227 0.97401 0.87956 0.89195 0.94944 0.97909 0.88560 0.91348 0.93313 0.87040 0.87135 0.88316 0.85765 0.84530 0.81991 0.74943 0.77481 0.94057 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.48 13.97 21.65 0.30 -63.18 16 2 C -0.03 -1.98 5.43 84.86 0.46 -1.52 16 3 Si 0.94 51.91 24.27 68.60 1.66 53.57 16 4 H -0.26 -13.19 6.49 99.48 0.65 -12.54 16 5 H -0.31 -16.78 7.11 99.48 0.71 -16.08 16 6 H -0.29 -16.69 6.66 99.48 0.66 -16.03 16 7 C -0.23 -14.46 10.57 84.03 0.89 -13.57 16 8 H 0.06 3.88 8.06 -2.91 -0.02 3.86 16 9 N -0.63 -32.65 3.21 -692.49 -2.22 -34.87 16 10 C 0.10 4.50 4.40 86.88 0.38 4.89 16 11 C -0.11 -3.22 5.99 31.79 0.19 -3.03 16 12 C -0.07 -2.14 0.54 -51.93 -0.03 -2.17 16 13 C 0.15 6.35 5.42 86.47 0.47 6.82 16 14 C -0.10 -1.74 4.52 30.40 0.14 -1.61 16 15 C -0.14 -1.92 5.92 30.71 0.18 -1.74 16 16 C 0.10 1.29 6.32 86.36 0.55 1.83 16 17 N -0.61 -14.80 2.59 -820.17 -2.13 -16.92 16 18 C 0.50 14.90 7.69 87.66 0.67 15.58 16 19 O -0.59 -25.46 15.46 -3.04 -0.05 -25.51 16 20 C -0.06 -1.11 4.56 29.10 0.13 -0.98 16 21 C -0.18 -4.42 4.66 -19.94 -0.09 -4.51 16 22 C -0.22 -4.91 10.87 22.19 0.24 -4.67 16 23 C -0.05 -1.07 12.09 66.97 0.81 -0.26 16 24 O -0.19 -5.25 10.65 -2.55 -0.03 -5.28 16 25 C -0.05 -1.34 12.01 66.97 0.80 -0.54 16 26 C 0.13 3.85 4.88 86.05 0.42 4.27 16 27 H 0.26 16.59 8.31 -92.71 -0.77 15.82 16 28 H 0.04 1.90 6.65 -2.38 -0.02 1.88 16 29 H 0.01 0.41 5.33 -2.39 -0.01 0.39 16 30 H 0.10 2.43 7.98 -2.39 -0.02 2.41 16 31 H 0.09 2.50 8.02 -2.39 -0.02 2.48 16 32 H 0.03 1.31 7.61 -2.38 -0.02 1.29 16 33 H 0.00 0.13 7.55 -2.39 -0.02 0.11 16 34 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.05 0.95 7.28 -2.39 -0.02 0.93 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.11 0.81 5.94 -2.38 -0.01 0.80 16 39 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 1.78 7.70 -2.39 -0.02 1.76 16 41 H 0.14 1.60 7.94 -2.39 -0.02 1.58 16 42 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.21 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.04 1.70 6.58 -2.39 -0.02 1.68 16 46 H 0.09 2.16 8.10 -2.39 -0.02 2.14 16 Total: -1.00 -90.95 356.04 4.63 -86.32 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.87 Total: 7.08 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 6.22 Total: -1.21 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -4.05 Total: -114.98 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.07 Total: -30.79 kcal Atomic # 14 Polarization: 51.91 SS G_CDS: 1.66 Total: 53.57 kcal Total: -90.95 4.63 -86.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054119407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.359 kcal (2) G-P(sol) polarization free energy of solvation -90.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds