Wall clock time and date at job start Tue Mar 31 2020 12:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00013 * 2 1 4 4 H 1.48498 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46911 * 300.00001 * 3 2 1 6 6 H 1.48498 * 109.47049 * 60.00141 * 3 2 1 7 7 C 1.38807 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99873 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00210 * 0.02562 * 7 2 1 10 10 C 1.47485 * 125.66228 * 359.97438 * 9 7 2 11 11 C 1.55026 * 104.90285 * 204.01229 * 10 9 7 12 12 C 1.54498 * 101.52813 * 323.65304 * 11 10 9 13 13 C 1.47197 * 125.66424 * 179.97438 * 9 7 2 14 14 C 1.52242 * 110.24412 * 276.20580 * 12 11 10 15 15 C 1.53166 * 109.64963 * 297.10238 * 14 12 11 16 16 C 1.53178 * 109.27849 * 299.83702 * 15 14 12 17 17 N 1.46937 * 108.93347 * 55.21686 * 16 15 14 18 18 C 1.34776 * 120.71042 * 125.81393 * 17 16 15 19 19 O 1.21274 * 120.00005 * 179.97438 * 18 17 16 20 20 C 1.50695 * 119.99649 * 359.97438 * 18 17 16 21 21 C 1.50708 * 109.46856 * 180.02562 * 20 18 17 22 22 C 1.34516 * 125.78754 * 89.99940 * 21 20 18 23 23 C 1.41376 * 106.84089 * 180.02562 * 22 21 20 24 24 C 1.34515 * 106.84242 * 0.02562 * 23 22 21 25 25 O 1.34298 * 125.79175 * 270.02095 * 21 20 18 26 26 C 1.47089 * 118.58367 * 306.08318 * 17 16 15 27 27 H 0.97005 * 119.99895 * 359.97438 * 1 2 3 28 28 H 1.08994 * 110.35388 * 322.87465 * 10 9 7 29 29 H 1.09003 * 110.34993 * 85.05631 * 10 9 7 30 30 H 1.08996 * 111.01536 * 205.58085 * 11 10 9 31 31 H 1.09008 * 111.01083 * 81.71356 * 11 10 9 32 32 H 1.08999 * 109.90922 * 59.11136 * 13 9 7 33 33 H 1.09004 * 110.06623 * 297.93518 * 13 9 7 34 34 H 1.09000 * 109.43841 * 177.04725 * 14 12 11 35 35 H 1.09005 * 109.41079 * 57.14353 * 14 12 11 36 36 H 1.08997 * 109.50486 * 179.89486 * 15 14 12 37 37 H 1.09009 * 109.52948 * 59.79551 * 15 14 12 38 38 H 1.08997 * 109.56411 * 295.37240 * 16 15 14 39 39 H 1.09007 * 109.64758 * 175.10071 * 16 15 14 40 40 H 1.09000 * 109.47263 * 60.00386 * 20 18 17 41 41 H 1.09003 * 109.47487 * 300.00086 * 20 18 17 42 42 H 1.08003 * 126.58045 * 0.04405 * 22 21 20 43 43 H 1.08003 * 126.58479 * 179.97438 * 23 22 21 44 44 H 1.07996 * 125.79220 * 179.73892 * 24 23 22 45 45 H 1.09007 * 109.57604 * 172.01816 * 26 17 16 46 46 H 1.08998 * 109.58251 * 292.41871 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1422 -2.5335 0.0005 11 6 -0.4039 -3.9346 0.6102 12 6 0.7807 -4.7458 0.0396 13 6 1.9320 -3.7292 0.0005 14 6 0.4525 -5.2431 -1.3613 15 6 -0.7440 -6.1975 -1.3019 16 6 -0.3946 -7.3916 -0.4084 17 7 0.0307 -6.8944 0.9072 18 6 -0.5634 -7.3342 2.0342 19 8 -0.2018 -6.9154 3.1134 20 6 -1.6770 -8.3463 1.9532 21 6 -2.1657 -8.6676 3.3421 22 6 -3.1504 -8.0270 3.9974 23 6 -3.2766 -8.6518 5.2593 24 6 -2.3611 -9.6366 5.3000 25 8 -1.6916 -9.6419 4.1357 26 6 1.1145 -5.9019 0.9677 27 1 -0.4850 0.8401 0.0004 28 1 -0.5998 -1.7601 0.6173 29 1 -0.5281 -2.4832 -1.0177 30 1 -1.3561 -4.3387 0.2665 31 1 -0.3659 -3.9004 1.6991 32 1 2.5644 -3.8506 0.8800 33 1 2.5232 -3.8723 -0.9040 34 1 1.3153 -5.7681 -1.7713 35 1 0.2079 -4.3937 -1.9992 36 1 -0.9781 -6.5506 -2.3062 37 1 -1.6071 -5.6746 -0.8895 38 1 0.4155 -7.9623 -0.8623 39 1 -1.2701 -8.0305 -0.2915 40 1 -1.3080 -9.2552 1.4781 41 1 -2.4983 -7.9366 1.3651 42 1 -3.7330 -7.1952 3.6300 43 1 -3.9737 -8.3885 6.0411 44 1 -2.1908 -10.3068 6.1295 45 1 1.2147 -5.5321 1.9882 46 1 2.0500 -6.3627 0.6506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054216909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:50 Heat of formation + Delta-G solvation = 11.136901 kcal Electronic energy + Delta-G solvation = -27464.682421 eV Core-core repulsion = 23742.819722 eV Total energy + Delta-G solvation = -3721.862699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.64106 -40.42639 -38.42732 -35.88146 -33.38616 -33.05515 -32.16719 -31.86800 -30.10229 -28.64806 -27.45568 -25.67493 -25.11378 -23.49529 -22.21431 -21.83734 -20.90860 -20.15848 -19.31050 -18.12453 -17.50491 -17.25203 -16.76740 -15.99429 -15.57180 -15.50069 -15.04347 -14.64301 -14.50726 -13.99587 -13.74115 -13.40579 -13.30960 -13.25812 -12.90357 -12.82598 -12.73498 -12.43829 -12.26801 -11.99654 -11.84926 -11.52315 -11.15762 -10.98505 -10.89241 -10.75637 -10.53756 -10.10445 -10.05509 -9.99286 -9.97070 -9.74360 -9.67092 -9.42630 -8.61424 -8.54174 -8.49498 -6.79108 -5.61887 -3.03161 1.60849 2.51199 2.60731 2.82285 3.12921 3.41639 3.47142 3.49611 4.38260 4.49208 4.51681 4.73351 4.81347 4.92756 4.96567 5.04655 5.06855 5.15049 5.17724 5.31808 5.36547 5.52595 5.57652 5.69247 5.72592 5.83894 5.86307 5.91020 5.95733 5.98657 6.01101 6.14730 6.29378 6.40289 6.41661 6.47134 6.50725 6.64581 6.74695 6.84431 6.96799 7.03954 7.41325 7.56355 7.66936 7.90329 8.18014 8.40212 9.25654 9.86648 10.52174 11.41910 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019770 B = 0.003084 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.961317 B = 9075.896161 C = 9792.150638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.155 3.845 11 C -0.130 4.130 12 C -0.084 4.084 13 C 0.149 3.851 14 C -0.099 4.099 15 C -0.137 4.137 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.515 3.485 19 O -0.528 6.528 20 C -0.060 4.060 21 C 0.006 3.994 22 C -0.195 4.195 23 C -0.212 4.212 24 C -0.042 4.042 25 O -0.174 6.174 26 C 0.131 3.869 27 H 0.250 0.750 28 H 0.103 0.897 29 H 0.010 0.990 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.123 0.877 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.093 0.907 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.402 -21.502 1.287 22.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.744 3.256 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.030 3.970 11 C -0.169 4.169 12 C -0.086 4.086 13 C 0.023 3.977 14 C -0.137 4.137 15 C -0.175 4.175 16 C -0.017 4.017 17 N -0.339 5.339 18 C 0.302 3.698 19 O -0.404 6.404 20 C -0.100 4.100 21 C -0.045 4.045 22 C -0.214 4.214 23 C -0.231 4.231 24 C -0.109 4.109 25 O -0.070 6.070 26 C 0.009 3.991 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.111 0.889 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.988 -21.245 1.785 22.144 hybrid contribution 0.269 1.008 -0.006 1.043 sum -5.718 -20.237 1.779 21.104 Atomic orbital electron populations 1.69829 1.04868 1.24528 1.57850 1.24778 0.95718 0.97672 1.02599 0.86010 0.78658 0.83718 0.77203 1.20555 1.21827 1.21779 1.19123 0.90514 0.82488 1.42707 0.90499 1.44532 1.01967 0.99578 1.86775 1.21911 0.84566 0.92602 0.97891 1.23018 0.95569 0.98464 0.99837 1.21262 0.98305 0.94322 0.94678 1.21142 0.93027 0.85681 0.97858 1.21339 0.96981 0.98863 0.96517 1.22010 0.99852 0.96376 0.99294 1.21786 1.00085 0.96503 0.83301 1.48092 1.37054 1.42983 1.05747 1.20275 0.83061 0.82455 0.84038 1.90749 1.63976 1.57979 1.27711 1.20138 0.98910 1.00014 0.90890 1.21506 0.97166 0.91945 0.93843 1.21552 1.01715 1.02854 0.95313 1.21806 1.03175 0.99072 0.99091 1.23965 0.95719 1.02787 0.88451 1.83969 1.52462 1.46564 1.23972 1.21467 0.87912 0.88041 1.01723 0.93881 0.87969 0.97196 0.92505 0.92371 0.95862 0.95898 0.92290 0.90755 0.90882 0.90871 0.91194 0.90159 0.87266 0.85937 0.83514 0.83495 0.78205 0.88874 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.09 55.49 0.56 -26.64 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.22 -6.20 10.28 -15.06 -0.15 -6.36 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.53 3.40 -170.24 -0.58 -16.11 16 10 C 0.16 3.79 5.57 -2.43 -0.01 3.78 16 11 C -0.13 -2.53 5.72 -24.87 -0.14 -2.67 16 12 C -0.08 -1.42 0.55 -154.31 -0.09 -1.51 16 13 C 0.15 3.11 6.43 -3.33 -0.02 3.09 16 14 C -0.10 -1.40 4.55 -27.03 -0.12 -1.52 16 15 C -0.14 -1.45 5.89 -26.55 -0.16 -1.61 16 16 C 0.11 0.96 6.33 -3.71 -0.02 0.94 16 17 N -0.61 -7.71 2.83 -173.38 -0.49 -8.20 16 18 C 0.51 7.18 7.69 -10.99 -0.08 7.10 16 19 O -0.53 -9.87 15.46 5.56 0.09 -9.79 16 20 C -0.06 -0.59 4.58 -29.03 -0.13 -0.73 16 21 C 0.01 0.07 5.81 -35.62 -0.21 -0.13 16 22 C -0.20 -2.37 10.81 -39.70 -0.43 -2.80 16 23 C -0.21 -2.31 10.91 -39.71 -0.43 -2.74 16 24 C -0.04 -0.43 12.09 29.42 0.36 -0.07 16 25 O -0.17 -2.21 10.65 5.72 0.06 -2.15 16 26 C 0.13 1.99 4.95 -4.25 -0.02 1.97 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.10 2.87 5.88 -51.93 -0.31 2.56 16 29 H 0.01 0.26 7.76 -51.93 -0.40 -0.15 16 30 H 0.06 0.99 6.00 -51.93 -0.31 0.68 16 31 H 0.06 1.23 7.89 -51.92 -0.41 0.82 16 32 H 0.02 0.49 7.80 -51.93 -0.40 0.09 16 33 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.22 7.49 -51.93 -0.39 0.84 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.85 6.23 -51.92 -0.32 0.53 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.50 5.94 -51.93 -0.31 0.19 16 40 H 0.11 0.80 7.93 -51.93 -0.41 0.38 16 41 H 0.12 0.89 7.71 -51.93 -0.40 0.49 16 42 H 0.15 1.60 8.06 -52.48 -0.42 1.17 16 43 H 0.15 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 45 H 0.09 1.67 6.86 -51.93 -0.36 1.32 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -34.72 359.14 -8.68 -43.40 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.93 Total: 0.45 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -1.77 Total: -3.73 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.51 Total: -50.95 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.15 Total: -11.93 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.72 -8.68 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.537 kcal (2) G-P(sol) polarization free energy of solvation -34.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds