Wall clock time and date at job start Tue Mar 31 2020 12:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48500 * 109.47398 * 274.99069 * 3 2 1 5 5 H 1.48498 * 109.47206 * 34.99012 * 3 2 1 6 6 H 1.48506 * 109.47396 * 154.98711 * 3 2 1 7 7 C 1.38816 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00223 * 186.90863 * 7 2 1 9 9 N 1.36937 * 119.99840 * 6.90356 * 7 2 1 10 10 C 1.47086 * 125.62803 * 354.10437 * 9 7 2 11 11 C 1.54474 * 107.30343 * 180.71569 * 10 9 7 12 12 C 1.54352 * 102.85471 * 21.47260 * 11 10 9 13 13 C 1.47582 * 125.62360 * 173.79541 * 9 7 2 14 14 C 1.52071 * 110.60855 * 83.54129 * 12 11 10 15 15 C 1.53193 * 109.67894 * 64.18750 * 14 12 11 16 16 C 1.53191 * 109.27571 * 59.95962 * 15 14 12 17 17 N 1.46932 * 108.93016 * 304.68110 * 16 15 14 18 18 C 1.34775 * 120.71217 * 234.23868 * 17 16 15 19 19 O 1.21280 * 120.00427 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99990 * 359.97438 * 18 17 16 21 21 C 1.50700 * 109.47274 * 180.02562 * 20 18 17 22 22 C 1.34520 * 125.78771 * 89.71957 * 21 20 18 23 23 C 1.41385 * 106.83683 * 179.89010 * 22 21 20 24 24 C 1.34513 * 106.84089 * 0.36882 * 23 22 21 25 25 O 1.34302 * 108.42389 * 359.77196 * 24 23 22 26 26 C 1.47114 * 118.57892 * 54.25947 * 17 16 15 27 27 H 0.96997 * 119.99599 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.87473 * 300.13544 * 10 9 7 29 29 H 1.08993 * 109.87900 * 61.13978 * 10 9 7 30 30 H 1.08994 * 110.73507 * 139.81941 * 11 10 9 31 31 H 1.09004 * 110.72999 * 262.95667 * 11 10 9 32 32 H 1.09006 * 110.37758 * 275.80859 * 13 9 7 33 33 H 1.08990 * 110.38176 * 38.16123 * 13 9 7 34 34 H 1.09007 * 109.43740 * 184.24952 * 14 12 11 35 35 H 1.09001 * 109.43886 * 304.16519 * 14 12 11 36 36 H 1.09000 * 109.50431 * 179.90036 * 15 14 12 37 37 H 1.08999 * 109.50302 * 299.98377 * 15 14 12 38 38 H 1.09003 * 109.56016 * 64.52025 * 16 15 14 39 39 H 1.09000 * 109.56036 * 184.83955 * 16 15 14 40 40 H 1.09000 * 109.47421 * 300.00100 * 20 18 17 41 41 H 1.09006 * 109.47323 * 60.00102 * 20 18 17 42 42 H 1.07994 * 126.58129 * 0.02562 * 22 21 20 43 43 H 1.08000 * 126.57509 * 180.16249 * 23 22 21 44 44 H 1.08005 * 125.78394 * 179.75136 * 24 23 22 45 45 H 1.08994 * 109.57397 * 187.94188 * 26 17 16 46 46 H 1.08998 * 109.57472 * 67.55132 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5966 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0843 -1.2057 0.1120 9 7 1.3330 -2.3837 -0.1436 10 6 -0.1297 -2.5336 -0.1824 11 6 -0.4332 -4.0402 -0.3379 12 6 0.8633 -4.7059 0.1704 13 6 1.9504 -3.7161 -0.2907 14 6 0.8469 -4.8212 1.6866 15 6 -0.2868 -5.7555 2.1207 16 6 -0.0644 -7.1405 1.5050 17 7 0.0579 -7.0002 0.0476 18 6 -0.7299 -7.7138 -0.7811 19 8 -0.6183 -7.5875 -1.9822 20 6 -1.7494 -8.6685 -0.2154 21 6 -2.4927 -9.3361 -1.3436 22 6 -2.1364 -10.4824 -1.9508 23 6 -3.1107 -10.7404 -2.9424 24 6 -3.9995 -9.7323 -2.8873 25 8 -3.6202 -8.8847 -1.9170 26 6 1.0589 -6.0645 -0.4878 27 1 -0.4849 0.8401 0.0004 28 1 -0.5650 -2.1617 0.7451 29 1 -0.5364 -1.9820 -1.0299 30 1 -1.2832 -4.3285 0.2805 31 1 -0.6152 -4.2913 -1.3829 32 1 2.2135 -3.8996 -1.3325 33 1 2.8323 -3.7980 0.3444 34 1 1.8001 -5.2234 2.0301 35 1 0.6908 -3.8349 2.1237 36 1 -0.2948 -5.8375 3.2076 37 1 -1.2406 -5.3536 1.7790 38 1 0.8499 -7.5765 1.9078 39 1 -0.9118 -7.7847 1.7399 40 1 -1.2445 -9.4255 0.3847 41 1 -2.4537 -8.1196 0.4097 42 1 -1.2733 -11.0901 -1.7231 43 1 -3.1346 -11.5834 -3.6171 44 1 -4.8702 -9.6229 -3.5168 45 1 0.9305 -5.9699 -1.5660 46 1 2.0599 -6.4358 -0.2685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054216910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:55 Heat of formation + Delta-G solvation = 9.375366 kcal Electronic energy + Delta-G solvation = -27450.064468 eV Core-core repulsion = 23728.125383 eV Total energy + Delta-G solvation = -3721.939085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65405 -40.40482 -38.42564 -35.88090 -33.38599 -33.02409 -32.16678 -31.85599 -30.09671 -28.68958 -27.45851 -25.68790 -25.06771 -23.51096 -22.15715 -21.85681 -20.92971 -20.14989 -19.33107 -18.12698 -17.51609 -17.26194 -16.73499 -15.99128 -15.55079 -15.51242 -15.03348 -14.60738 -14.40206 -14.10929 -13.73358 -13.45371 -13.30613 -13.21097 -12.92651 -12.82914 -12.72955 -12.54062 -12.05167 -11.94893 -11.90305 -11.70703 -11.08963 -10.97311 -10.86948 -10.66842 -10.56452 -10.09973 -10.04973 -10.00178 -9.91901 -9.79469 -9.67171 -9.54673 -8.56162 -8.53920 -8.49539 -6.77740 -5.69053 -3.01002 1.59983 2.48467 2.59704 2.80527 3.13804 3.41821 3.47158 3.48876 4.36858 4.48037 4.52618 4.75687 4.81388 4.89995 5.01015 5.06423 5.07580 5.10274 5.20439 5.30702 5.37881 5.52789 5.60043 5.68498 5.74808 5.78954 5.87325 5.91749 5.97421 5.98113 6.01797 6.14277 6.33639 6.38779 6.39283 6.48559 6.56733 6.66348 6.72009 6.83349 6.96448 7.03381 7.40853 7.59885 7.70266 7.87083 8.16492 8.29514 9.25370 9.86042 10.53469 11.42885 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.002935 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.356456 B = 9536.691164 C =10011.496227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.180 3.820 11 C -0.130 4.130 12 C -0.086 4.086 13 C 0.148 3.852 14 C -0.096 4.096 15 C -0.137 4.137 16 C 0.106 3.894 17 N -0.605 5.605 18 C 0.515 3.485 19 O -0.530 6.530 20 C -0.061 4.061 21 C 0.008 3.992 22 C -0.199 4.199 23 C -0.215 4.215 24 C -0.038 4.038 25 O -0.171 6.171 26 C 0.130 3.870 27 H 0.251 0.749 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.019 0.981 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.202 0.798 45 H 0.092 0.908 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -22.146 2.994 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.055 3.945 11 C -0.168 4.168 12 C -0.087 4.087 13 C 0.022 3.978 14 C -0.134 4.134 15 C -0.175 4.175 16 C -0.017 4.017 17 N -0.338 5.338 18 C 0.302 3.698 19 O -0.406 6.406 20 C -0.101 4.101 21 C -0.042 4.042 22 C -0.218 4.218 23 C -0.234 4.234 24 C -0.106 4.106 25 O -0.066 6.066 26 C 0.008 3.992 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.218 0.782 45 H 0.110 0.890 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.212 -21.575 2.456 22.331 hybrid contribution 0.467 0.774 -0.124 0.912 sum -4.745 -20.801 2.332 21.462 Atomic orbital electron populations 1.69992 1.04897 1.24923 1.56853 1.24814 0.95674 0.97602 1.02316 0.86144 0.78657 0.83759 0.77487 1.21682 1.21852 1.20678 1.19046 0.91064 0.82593 1.42848 0.90513 1.44483 1.01607 1.00951 1.85879 1.21151 0.84295 0.88477 1.00561 1.22841 0.95534 0.98908 0.99554 1.21397 0.98512 0.93466 0.95360 1.21380 0.93594 0.85742 0.97115 1.21223 0.97208 1.00338 0.94608 1.22010 1.00706 0.94739 1.00087 1.21800 1.01960 0.98227 0.79690 1.48104 1.37334 1.41902 1.06499 1.20271 0.81474 0.81214 0.86839 1.90742 1.68977 1.66156 1.14760 1.20145 0.96431 0.98969 0.94544 1.21523 0.88426 0.95354 0.98930 1.21494 1.01978 0.98917 0.99412 1.21782 0.96950 1.01866 1.02815 1.23998 1.02049 0.90779 0.93783 1.84005 1.36178 1.45696 1.40765 1.21492 0.90017 0.87799 0.99894 0.93842 0.94178 0.93958 0.92387 0.92708 0.96296 0.94290 0.92439 0.90250 0.90897 0.91020 0.91151 0.90205 0.86089 0.87045 0.83696 0.83551 0.78171 0.88994 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.28 10.35 55.49 0.57 -26.70 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 22.29 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.60 -15.36 3.39 -170.32 -0.58 -15.93 16 10 C 0.18 4.43 5.02 -2.95 -0.01 4.41 16 11 C -0.13 -2.53 5.68 -25.25 -0.14 -2.67 16 12 C -0.09 -1.44 0.55 -154.10 -0.08 -1.53 16 13 C 0.15 3.04 6.16 -2.88 -0.02 3.02 16 14 C -0.10 -1.42 4.66 -27.10 -0.13 -1.54 16 15 C -0.14 -1.53 5.91 -26.53 -0.16 -1.69 16 16 C 0.11 0.97 6.32 -3.71 -0.02 0.95 16 17 N -0.60 -7.60 2.86 -173.20 -0.50 -8.10 16 18 C 0.52 7.06 7.70 -10.99 -0.08 6.97 16 19 O -0.53 -9.68 15.46 5.56 0.09 -9.60 16 20 C -0.06 -0.60 4.58 -29.04 -0.13 -0.73 16 21 C 0.01 0.10 5.81 -35.62 -0.21 -0.11 16 22 C -0.20 -2.25 10.81 -39.70 -0.43 -2.68 16 23 C -0.21 -2.23 10.91 -39.70 -0.43 -2.67 16 24 C -0.04 -0.40 12.09 29.42 0.36 -0.04 16 25 O -0.17 -2.24 10.65 5.71 0.06 -2.18 16 26 C 0.13 1.93 5.11 -4.10 -0.02 1.91 16 27 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 28 H 0.04 1.08 7.55 -51.93 -0.39 0.68 16 29 H 0.04 1.18 7.35 -51.93 -0.38 0.80 16 30 H 0.06 1.04 6.09 -51.93 -0.32 0.73 16 31 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 32 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 33 H 0.04 0.77 8.02 -51.93 -0.42 0.35 16 34 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.08 1.43 7.83 -51.93 -0.41 1.02 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.89 6.31 -51.93 -0.33 0.57 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.51 5.94 -51.93 -0.31 0.20 16 40 H 0.12 0.77 7.93 -51.93 -0.41 0.35 16 41 H 0.11 0.90 7.71 -51.93 -0.40 0.50 16 42 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.20 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.09 1.58 6.85 -51.93 -0.36 1.22 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 361.01 15.07 5.44 5.44 Total: -1.00 -34.70 361.01 -8.75 -43.46 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.05 Total: -0.43 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.77 Total: -3.21 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.50 Total: -50.74 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.15 Total: -11.78 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.70 -8.75 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.833 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds