Wall clock time and date at job start Tue Mar 31 2020 12:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00113 * 2 1 4 4 H 1.48500 * 109.47398 * 274.99069 * 3 2 1 5 5 H 1.48498 * 109.47206 * 34.99012 * 3 2 1 6 6 H 1.48506 * 109.47396 * 154.98711 * 3 2 1 7 7 C 1.38816 * 119.99953 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00223 * 186.90863 * 7 2 1 9 9 N 1.36937 * 119.99840 * 6.90356 * 7 2 1 10 10 C 1.47086 * 125.62803 * 354.10437 * 9 7 2 11 11 C 1.54474 * 107.30343 * 180.71569 * 10 9 7 12 12 C 1.54352 * 102.85471 * 21.47260 * 11 10 9 13 13 C 1.47582 * 125.62360 * 173.79541 * 9 7 2 14 14 C 1.52071 * 110.60855 * 83.54129 * 12 11 10 15 15 C 1.53193 * 109.67894 * 64.18750 * 14 12 11 16 16 C 1.53191 * 109.27571 * 59.95962 * 15 14 12 17 17 N 1.46932 * 108.93016 * 304.68110 * 16 15 14 18 18 C 1.34775 * 120.71217 * 234.23868 * 17 16 15 19 19 O 1.21280 * 120.00427 * 179.97438 * 18 17 16 20 20 C 1.50698 * 119.99990 * 359.97438 * 18 17 16 21 21 C 1.50700 * 109.47274 * 180.02562 * 20 18 17 22 22 C 1.34520 * 125.78771 * 89.71957 * 21 20 18 23 23 C 1.41385 * 106.83683 * 179.89010 * 22 21 20 24 24 C 1.34513 * 106.84089 * 0.36882 * 23 22 21 25 25 O 1.34302 * 108.42389 * 359.77196 * 24 23 22 26 26 C 1.47114 * 118.57892 * 54.25947 * 17 16 15 27 27 H 0.96997 * 119.99599 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.87473 * 300.13544 * 10 9 7 29 29 H 1.08993 * 109.87900 * 61.13978 * 10 9 7 30 30 H 1.08994 * 110.73507 * 139.81941 * 11 10 9 31 31 H 1.09004 * 110.72999 * 262.95667 * 11 10 9 32 32 H 1.09006 * 110.37758 * 275.80859 * 13 9 7 33 33 H 1.08990 * 110.38176 * 38.16123 * 13 9 7 34 34 H 1.09007 * 109.43740 * 184.24952 * 14 12 11 35 35 H 1.09001 * 109.43886 * 304.16519 * 14 12 11 36 36 H 1.09000 * 109.50431 * 179.90036 * 15 14 12 37 37 H 1.08999 * 109.50302 * 299.98377 * 15 14 12 38 38 H 1.09003 * 109.56016 * 64.52025 * 16 15 14 39 39 H 1.09000 * 109.56036 * 184.83955 * 16 15 14 40 40 H 1.09000 * 109.47421 * 300.00100 * 20 18 17 41 41 H 1.09006 * 109.47323 * 60.00102 * 20 18 17 42 42 H 1.07994 * 126.58129 * 0.02562 * 22 21 20 43 43 H 1.08000 * 126.57509 * 180.16249 * 23 22 21 44 44 H 1.08005 * 125.78394 * 179.75136 * 24 23 22 45 45 H 1.08994 * 109.57397 * 187.94188 * 26 17 16 46 46 H 1.08998 * 109.57472 * 67.55132 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6199 0.8028 6 1 3.5966 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0843 -1.2057 0.1120 9 7 1.3330 -2.3837 -0.1436 10 6 -0.1297 -2.5336 -0.1824 11 6 -0.4332 -4.0402 -0.3379 12 6 0.8633 -4.7059 0.1704 13 6 1.9504 -3.7161 -0.2907 14 6 0.8469 -4.8212 1.6866 15 6 -0.2868 -5.7555 2.1207 16 6 -0.0644 -7.1405 1.5050 17 7 0.0579 -7.0002 0.0476 18 6 -0.7299 -7.7138 -0.7811 19 8 -0.6183 -7.5875 -1.9822 20 6 -1.7494 -8.6685 -0.2154 21 6 -2.4927 -9.3361 -1.3436 22 6 -2.1364 -10.4824 -1.9508 23 6 -3.1107 -10.7404 -2.9424 24 6 -3.9995 -9.7323 -2.8873 25 8 -3.6202 -8.8847 -1.9170 26 6 1.0589 -6.0645 -0.4878 27 1 -0.4849 0.8401 0.0004 28 1 -0.5650 -2.1617 0.7451 29 1 -0.5364 -1.9820 -1.0299 30 1 -1.2832 -4.3285 0.2805 31 1 -0.6152 -4.2913 -1.3829 32 1 2.2135 -3.8996 -1.3325 33 1 2.8323 -3.7980 0.3444 34 1 1.8001 -5.2234 2.0301 35 1 0.6908 -3.8349 2.1237 36 1 -0.2948 -5.8375 3.2076 37 1 -1.2406 -5.3536 1.7790 38 1 0.8499 -7.5765 1.9078 39 1 -0.9118 -7.7847 1.7399 40 1 -1.2445 -9.4255 0.3847 41 1 -2.4537 -8.1196 0.4097 42 1 -1.2733 -11.0901 -1.7231 43 1 -3.1346 -11.5834 -3.6171 44 1 -4.8702 -9.6229 -3.5168 45 1 0.9305 -5.9699 -1.5660 46 1 2.0599 -6.4358 -0.2685 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054216910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:54 Heat of formation + Delta-G solvation = -12.569998 kcal Electronic energy + Delta-G solvation = -27451.016090 eV Core-core repulsion = 23728.125383 eV Total energy + Delta-G solvation = -3722.890707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -43.45704 -41.56809 -39.78545 -37.28037 -34.83555 -34.07917 -33.19702 -32.97474 -31.71221 -30.47438 -28.42343 -27.25838 -26.23147 -25.18941 -23.25885 -22.65553 -22.11185 -21.73403 -20.42265 -19.51472 -18.62820 -18.37196 -18.13519 -17.02560 -16.82663 -16.52942 -16.42853 -16.31145 -15.70728 -15.26375 -14.91937 -14.80394 -14.54921 -14.31921 -14.04853 -13.87510 -13.70314 -13.62315 -13.51907 -13.40223 -13.23156 -12.89830 -12.82211 -12.67204 -12.24502 -12.12529 -12.03505 -11.87759 -11.73454 -11.55147 -11.33657 -11.17904 -10.88290 -10.76851 -10.70045 -9.56748 -9.35513 -8.89394 -7.86919 -5.21187 0.78390 1.43637 1.46456 1.54935 1.60584 1.69694 2.01314 2.27411 2.48729 3.31565 3.49358 3.58189 3.72263 3.75164 3.92457 3.93832 4.16846 4.17548 4.19403 4.26197 4.34156 4.38769 4.47191 4.50429 4.58710 4.64920 4.75247 4.80980 4.89446 4.92459 4.94516 4.96749 5.00377 5.04051 5.15178 5.23644 5.28324 5.44035 5.50014 5.52915 5.57192 5.64802 5.65754 5.74744 6.17717 6.24023 6.45309 7.08439 7.17369 7.76359 8.42741 9.24274 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024250 B = 0.002935 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.356456 B = 9536.691164 C =10011.496227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.291 1.291 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.240 4.240 8 H 0.084 0.916 9 N -0.622 5.622 10 C 0.193 3.807 11 C -0.114 4.114 12 C -0.069 4.069 13 C 0.141 3.859 14 C -0.094 4.094 15 C -0.132 4.132 16 C 0.104 3.896 17 N -0.602 5.602 18 C 0.510 3.490 19 O -0.587 6.587 20 C -0.053 4.053 21 C -0.018 4.018 22 C -0.210 4.210 23 C -0.228 4.228 24 C -0.049 4.049 25 O -0.197 6.197 26 C 0.138 3.862 27 H 0.245 0.755 28 H 0.010 0.990 29 H -0.004 1.004 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.014 0.986 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.164 0.836 41 H 0.132 0.868 42 H 0.161 0.839 43 H 0.168 0.832 44 H 0.231 0.769 45 H 0.062 0.938 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -24.902 4.820 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.218 1.218 5 H -0.221 1.221 6 H -0.188 1.188 7 C -0.369 4.369 8 H 0.102 0.898 9 N -0.348 5.348 10 C 0.068 3.932 11 C -0.152 4.152 12 C -0.070 4.070 13 C 0.016 3.984 14 C -0.131 4.131 15 C -0.170 4.170 16 C -0.017 4.017 17 N -0.334 5.334 18 C 0.299 3.701 19 O -0.467 6.467 20 C -0.092 4.092 21 C -0.068 4.068 22 C -0.229 4.229 23 C -0.247 4.247 24 C -0.116 4.116 25 O -0.094 6.094 26 C 0.015 3.985 27 H 0.055 0.945 28 H 0.028 0.972 29 H 0.014 0.986 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.121 0.879 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.137 0.863 40 H 0.181 0.819 41 H 0.150 0.850 42 H 0.179 0.821 43 H 0.185 0.815 44 H 0.247 0.753 45 H 0.081 0.919 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.464 -24.370 4.320 25.150 hybrid contribution 0.259 1.625 -0.739 1.804 sum -4.205 -22.746 3.581 23.407 Atomic orbital electron populations 1.70222 1.06445 1.25167 1.58215 1.25693 0.96568 1.01114 1.02722 0.85066 0.78012 0.79217 0.77110 1.21839 1.22109 1.18834 1.19475 0.91665 0.83804 1.41933 0.89776 1.44765 1.02113 1.02344 1.85619 1.20826 0.84084 0.91342 0.96968 1.22631 0.97915 0.95412 0.99234 1.21289 0.94811 0.93629 0.97290 1.21601 0.95181 0.84475 0.97159 1.21190 1.00152 0.99597 0.92179 1.21988 0.97989 0.94909 1.02093 1.22137 1.05162 0.97492 0.76894 1.48189 1.36352 1.40758 1.08147 1.21014 0.81545 0.81294 0.86208 1.90722 1.70576 1.68012 1.17350 1.20295 0.95597 0.99170 0.94133 1.22047 0.88660 0.96010 1.00049 1.21875 1.02513 0.99080 0.99404 1.22172 0.96767 1.02623 1.03109 1.24722 1.03028 0.90387 0.93423 1.83989 1.36968 1.46776 1.41659 1.21208 0.92086 0.87158 0.98069 0.94533 0.97198 0.98614 0.90639 0.94149 0.96857 0.92917 0.90218 0.94156 0.87900 0.92633 0.88359 0.86296 0.81873 0.84972 0.82130 0.81451 0.75262 0.91923 0.89321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.17 10.35 21.65 0.22 -58.95 16 2 C -0.07 -3.98 5.48 84.86 0.47 -3.52 16 3 Si 0.98 46.82 29.56 68.60 2.03 48.85 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.24 -13.73 10.26 84.03 0.86 -12.87 16 8 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 9 N -0.62 -32.88 3.39 -692.77 -2.35 -35.22 16 10 C 0.19 10.09 5.02 86.77 0.44 10.52 16 11 C -0.11 -4.56 5.68 31.55 0.18 -4.38 16 12 C -0.07 -2.27 0.55 -51.92 -0.03 -2.30 16 13 C 0.14 5.84 6.16 86.54 0.53 6.37 16 14 C -0.09 -2.58 4.66 30.35 0.14 -2.44 16 15 C -0.13 -2.46 5.91 30.72 0.18 -2.28 16 16 C 0.10 1.37 6.32 86.36 0.55 1.92 16 17 N -0.60 -13.36 2.86 -820.28 -2.35 -15.71 16 18 C 0.51 12.93 7.70 87.66 0.67 13.60 16 19 O -0.59 -21.41 15.46 -3.03 -0.05 -21.45 16 20 C -0.05 -0.86 4.58 29.10 0.13 -0.72 16 21 C -0.02 -0.40 5.81 24.83 0.14 -0.25 16 22 C -0.21 -4.39 10.81 22.19 0.24 -4.15 16 23 C -0.23 -4.41 10.91 22.19 0.24 -4.17 16 24 C -0.05 -0.97 12.09 66.97 0.81 -0.16 16 25 O -0.20 -5.03 10.65 -2.48 -0.03 -5.05 16 26 C 0.14 3.88 5.11 86.01 0.44 4.32 16 27 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 28 H 0.01 0.56 7.55 -2.39 -0.02 0.55 16 29 H 0.00 -0.27 7.35 -2.39 -0.02 -0.28 16 30 H 0.08 2.75 6.09 -2.39 -0.01 2.73 16 31 H 0.04 1.72 7.88 -2.38 -0.02 1.70 16 32 H 0.01 0.58 8.00 -2.38 -0.02 0.56 16 33 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.04 1.44 7.83 -2.39 -0.02 1.42 16 36 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.24 6.31 -2.39 -0.02 1.22 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.12 0.73 5.94 -2.39 -0.01 0.72 16 40 H 0.16 1.18 7.93 -2.39 -0.02 1.16 16 41 H 0.13 1.59 7.71 -2.38 -0.02 1.57 16 42 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.23 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.06 2.17 6.85 -2.39 -0.02 2.15 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -82.32 361.01 4.45 -77.87 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.97 Total: 10.16 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 6.00 Total: -0.50 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -4.47 Total: -109.88 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.07 Total: -26.51 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -82.32 4.45 -77.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054216910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.302 kcal (2) G-P(sol) polarization free energy of solvation -82.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds