Wall clock time and date at job start Tue Mar 31 2020 12:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00400 * 2 1 4 4 H 1.48498 * 109.47310 * 269.99998 * 3 2 1 5 5 H 1.48499 * 109.46817 * 29.99702 * 3 2 1 6 6 H 1.48496 * 109.47468 * 149.99844 * 3 2 1 7 7 C 1.38813 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00160 * 160.72515 * 7 2 1 9 9 N 1.36941 * 120.00170 * 340.71948 * 7 2 1 10 10 C 1.43395 * 120.61543 * 155.50312 * 9 7 2 11 11 C 1.55330 * 116.33321 * 269.34766 * 10 9 7 12 12 C 1.55188 * 108.87098 * 319.47404 * 11 10 9 13 13 O 1.39647 * 110.57257 * 322.14323 * 12 11 10 14 14 C 1.42379 * 108.63345 * 101.17297 * 13 12 11 15 15 H 1.08996 * 108.61985 * 28.57048 * 14 13 12 16 16 C 1.52998 * 108.61737 * 146.34578 * 14 13 12 17 17 N 1.46503 * 109.47006 * 304.23577 * 16 14 13 18 18 C 1.34771 * 119.99631 * 180.02562 * 17 16 14 19 19 O 1.21284 * 120.00476 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99696 * 180.02562 * 18 17 16 21 21 C 1.50284 * 109.46711 * 300.02874 * 20 18 17 22 22 C 1.32272 * 121.58776 * 303.35914 * 21 20 18 23 23 C 1.45196 * 123.04299 * 0.95143 * 22 21 20 24 24 C 1.32948 * 125.19862 * 319.59782 * 23 22 21 25 25 C 1.45199 * 125.19595 * 359.97438 * 24 23 22 26 26 C 1.32300 * 123.02101 * 40.43194 * 25 24 23 27 27 C 1.46923 * 113.78705 * 267.45617 * 14 13 12 28 28 H 0.97005 * 119.99888 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.06771 * 147.56352 * 10 9 7 30 30 H 1.08999 * 107.92020 * 31.00827 * 10 9 7 31 31 H 1.09002 * 109.56663 * 199.65863 * 11 10 9 32 32 H 1.09000 * 109.57011 * 79.29202 * 11 10 9 33 33 H 1.09005 * 109.25693 * 201.86168 * 12 11 10 34 34 H 1.09002 * 109.25918 * 82.42817 * 12 11 10 35 35 H 1.09002 * 109.47248 * 64.24260 * 16 14 13 36 36 H 1.09002 * 109.47051 * 184.24051 * 16 14 13 37 37 H 0.97001 * 120.00064 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.46456 * 60.01778 * 20 18 17 39 39 H 1.08000 * 119.20608 * 123.32159 * 21 20 18 40 40 H 1.08001 * 118.46806 * 180.98692 * 22 21 20 41 41 H 1.07994 * 117.40385 * 139.58506 * 23 22 21 42 42 H 1.07996 * 117.40143 * 179.97438 * 24 23 22 43 43 H 1.07998 * 118.48957 * 220.40778 * 25 24 23 44 44 H 1.08003 * 119.19478 * 179.04728 * 26 25 24 45 45 H 1.09003 * 109.98761 * 176.12288 * 27 14 13 46 46 H 1.08997 * 109.98917 * 297.39577 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0448 -1.2286 -0.3082 9 7 1.3831 -2.3547 0.3926 10 6 1.8476 -3.6313 -0.0664 11 6 1.2112 -4.1648 -1.3791 12 6 -0.3082 -3.8492 -1.3647 13 8 -0.8302 -4.0078 -0.0792 14 6 -0.9708 -2.7223 0.5165 15 1 -1.1356 -1.9891 -0.2730 16 6 -2.2000 -2.7379 1.4273 17 7 -3.3745 -3.1517 0.6555 18 6 -4.5785 -3.2376 1.2549 19 8 -4.6899 -2.9718 2.4330 20 6 -5.7866 -3.6638 0.4611 21 6 -6.0104 -2.6976 -0.6680 22 6 -6.1696 -1.4027 -0.4505 23 6 -6.1222 -0.8107 0.8744 24 6 -6.6549 -1.3419 1.9706 25 6 -7.3736 -2.6023 2.0256 26 6 -6.9943 -3.6783 1.3556 27 6 0.1945 -2.3053 1.3082 28 1 -0.4850 0.8401 -0.0004 29 1 1.6627 -4.3616 0.7214 30 1 2.9251 -3.5623 -0.2155 31 1 1.3597 -5.2427 -1.4450 32 1 1.6774 -3.6772 -2.2352 33 1 -0.8223 -4.5258 -2.0475 34 1 -0.4650 -2.8215 -1.6922 35 1 -2.0371 -3.4394 2.2455 36 1 -2.3648 -1.7394 1.8323 37 1 -3.2855 -3.3639 -0.2868 38 1 -5.6218 -4.6627 0.0572 39 1 -6.0415 -3.0695 -1.6815 40 1 -6.3434 -0.7559 -1.2978 41 1 -5.6135 0.1363 0.9778 42 1 -6.5444 -0.7921 2.8935 43 1 -8.2582 -2.6645 2.6420 44 1 -7.5666 -4.5889 1.4539 45 1 0.0502 -1.2899 1.6772 46 1 0.3401 -2.9884 2.1450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073620675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:20 Heat of formation + Delta-G solvation = 6.841962 kcal Electronic energy + Delta-G solvation = -27988.265904 eV Core-core repulsion = 24266.216963 eV Total energy + Delta-G solvation = -3722.048941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.22655 -38.97420 -37.02380 -35.00643 -34.43024 -32.62232 -32.22409 -31.89854 -31.01979 -28.64088 -26.68592 -25.34681 -24.98581 -23.52167 -22.60166 -20.74289 -20.67569 -19.60314 -18.52069 -17.50342 -17.13394 -17.06692 -16.34582 -15.95729 -15.39160 -14.87310 -14.66091 -14.51201 -14.22529 -14.10037 -13.85571 -13.53086 -13.13679 -12.95060 -12.52765 -12.46000 -12.29040 -12.10920 -11.87198 -11.85079 -11.40461 -11.20507 -10.88764 -10.82361 -10.73167 -10.50017 -10.16370 -10.14758 -9.97087 -9.70911 -9.64231 -9.48099 -9.18960 -8.79628 -8.59287 -8.48875 -8.09324 -6.81630 -5.92329 -3.30933 1.31433 2.05976 2.95871 3.30574 3.32092 3.40543 3.43234 3.69609 4.43309 4.71533 4.76704 4.86545 4.96523 5.14596 5.16820 5.25527 5.28442 5.31244 5.48074 5.65581 5.74932 5.82313 5.93315 5.95599 6.01322 6.04254 6.16358 6.34356 6.43832 6.48056 6.50294 6.56785 6.62195 6.67572 6.72743 6.79532 6.82486 6.84430 6.92100 6.95082 7.00659 7.13546 7.33356 7.71588 7.95951 8.14811 8.32186 8.64354 9.06887 9.75211 10.29595 11.16566 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.004055 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.246560 B = 6903.104742 C = 7899.015890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.069 0.931 9 N -0.587 5.587 10 C 0.161 3.839 11 C -0.172 4.172 12 C 0.067 3.933 13 O -0.370 6.370 14 C 0.061 3.939 15 H 0.106 0.894 16 C 0.124 3.876 17 N -0.710 5.710 18 C 0.519 3.481 19 O -0.539 6.539 20 C -0.048 4.048 21 C -0.149 4.149 22 C -0.103 4.103 23 C -0.144 4.144 24 C -0.077 4.077 25 C -0.103 4.103 26 C -0.127 4.127 27 C 0.143 3.857 28 H 0.255 0.745 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.399 0.601 38 H 0.103 0.897 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.103 0.897 46 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.584 -6.237 -1.874 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.308 5.308 10 C 0.032 3.968 11 C -0.213 4.213 12 C -0.010 4.010 13 O -0.288 6.288 14 C 0.003 3.997 15 H 0.124 0.876 16 C 0.000 4.000 17 N -0.360 5.360 18 C 0.304 3.696 19 O -0.417 6.417 20 C -0.070 4.070 21 C -0.167 4.167 22 C -0.121 4.121 23 C -0.162 4.162 24 C -0.095 4.095 25 C -0.121 4.121 26 C -0.146 4.146 27 C 0.019 3.981 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.122 0.878 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.121 0.879 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -12.750 -6.050 -0.884 14.140 hybrid contribution 0.574 0.991 -0.807 1.401 sum -12.176 -5.059 -1.691 13.293 Atomic orbital electron populations 1.69871 1.05187 1.25655 1.54437 1.24892 0.95282 0.98304 1.01005 0.86293 0.79268 0.83562 0.77637 1.21536 1.21536 1.20573 1.19253 0.93658 0.85219 1.39782 0.91348 1.44117 1.34224 1.01478 1.50945 1.20372 0.95883 0.87823 0.92735 1.23582 0.97016 0.99040 1.01684 1.22340 0.93373 1.00703 0.84624 1.87509 1.83345 1.29134 1.28819 1.22176 0.93946 0.84802 0.98789 0.87622 1.21645 0.83817 1.00054 0.94517 1.45830 1.07647 1.68566 1.13939 1.20299 0.83986 0.77558 0.87727 1.90665 1.85263 1.49578 1.16157 1.19222 0.92875 1.00308 0.94578 1.22881 1.02818 0.93303 0.97739 1.21111 0.99027 0.95375 0.96605 1.21034 1.01168 1.01554 0.92429 1.20999 0.95945 0.95143 0.97397 1.20990 0.98954 0.93363 0.98790 1.22682 0.97521 0.98297 0.96079 1.20739 0.85465 1.01330 0.90599 0.93499 0.95054 0.94923 0.93207 0.92530 0.93156 0.91937 0.92313 0.90681 0.76727 0.87837 0.86117 0.86492 0.86971 0.87082 0.86785 0.86512 0.87884 0.96346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.59 9.57 55.49 0.53 -23.06 16 2 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 3 Si 0.90 20.82 29.60 -169.99 -5.03 15.79 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.50 9.61 -15.06 -0.14 -6.65 16 8 H 0.07 1.78 7.87 -52.48 -0.41 1.37 16 9 N -0.59 -14.08 2.62 -174.52 -0.46 -14.54 16 10 C 0.16 3.40 5.33 -4.45 -0.02 3.37 16 11 C -0.17 -3.20 6.75 -24.34 -0.16 -3.36 16 12 C 0.07 1.25 6.38 38.32 0.24 1.50 16 13 O -0.37 -7.20 9.34 -31.96 -0.30 -7.50 16 14 C 0.06 1.25 2.01 -29.64 -0.06 1.19 16 15 H 0.11 2.42 5.25 -51.93 -0.27 2.15 16 16 C 0.12 2.32 5.26 -4.04 -0.02 2.30 16 17 N -0.71 -11.56 5.30 -60.29 -0.32 -11.88 16 18 C 0.52 8.34 5.48 -10.99 -0.06 8.28 16 19 O -0.54 -10.31 13.67 5.55 0.08 -10.23 16 20 C -0.05 -0.60 2.89 -94.47 -0.27 -0.87 16 21 C -0.15 -1.69 8.89 -36.44 -0.32 -2.01 16 22 C -0.10 -1.26 9.58 -38.75 -0.37 -1.63 16 23 C -0.14 -1.97 8.53 -38.65 -0.33 -2.30 16 24 C -0.08 -1.05 7.35 -38.65 -0.28 -1.34 16 25 C -0.10 -1.28 9.09 -38.75 -0.35 -1.63 16 26 C -0.13 -1.52 8.78 -36.43 -0.32 -1.84 16 27 C 0.14 3.26 4.70 -4.93 -0.02 3.24 16 28 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 29 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 30 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.31 6.66 -51.93 -0.35 0.96 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.40 5.97 8.07 -40.82 -0.33 5.64 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 41 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 45 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -28.71 360.44 -9.79 -38.51 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.13 Total: 9.24 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.59 Total: -1.75 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.25 Total: -49.48 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.22 Total: -17.73 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.71 -9.79 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073620675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.347 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds