Wall clock time and date at job start Tue Mar 31 2020 12:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86798 * 120.00400 * 2 1 4 4 H 1.48498 * 109.47310 * 269.99998 * 3 2 1 5 5 H 1.48499 * 109.46817 * 29.99702 * 3 2 1 6 6 H 1.48496 * 109.47468 * 149.99844 * 3 2 1 7 7 C 1.38813 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00160 * 160.72515 * 7 2 1 9 9 N 1.36941 * 120.00170 * 340.71948 * 7 2 1 10 10 C 1.43395 * 120.61543 * 155.50312 * 9 7 2 11 11 C 1.55330 * 116.33321 * 269.34766 * 10 9 7 12 12 C 1.55188 * 108.87098 * 319.47404 * 11 10 9 13 13 O 1.39647 * 110.57257 * 322.14323 * 12 11 10 14 14 C 1.42379 * 108.63345 * 101.17297 * 13 12 11 15 15 H 1.08996 * 108.61985 * 28.57048 * 14 13 12 16 16 C 1.52998 * 108.61737 * 146.34578 * 14 13 12 17 17 N 1.46503 * 109.47006 * 304.23577 * 16 14 13 18 18 C 1.34771 * 119.99631 * 180.02562 * 17 16 14 19 19 O 1.21284 * 120.00476 * 0.02562 * 18 17 16 20 20 C 1.50704 * 119.99696 * 180.02562 * 18 17 16 21 21 C 1.50284 * 109.46711 * 300.02874 * 20 18 17 22 22 C 1.32272 * 121.58776 * 303.35914 * 21 20 18 23 23 C 1.45196 * 123.04299 * 0.95143 * 22 21 20 24 24 C 1.32948 * 125.19862 * 319.59782 * 23 22 21 25 25 C 1.45199 * 125.19595 * 359.97438 * 24 23 22 26 26 C 1.32300 * 123.02101 * 40.43194 * 25 24 23 27 27 C 1.46923 * 113.78705 * 267.45617 * 14 13 12 28 28 H 0.97005 * 119.99888 * 0.02562 * 1 2 3 29 29 H 1.09001 * 108.06771 * 147.56352 * 10 9 7 30 30 H 1.08999 * 107.92020 * 31.00827 * 10 9 7 31 31 H 1.09002 * 109.56663 * 199.65863 * 11 10 9 32 32 H 1.09000 * 109.57011 * 79.29202 * 11 10 9 33 33 H 1.09005 * 109.25693 * 201.86168 * 12 11 10 34 34 H 1.09002 * 109.25918 * 82.42817 * 12 11 10 35 35 H 1.09002 * 109.47248 * 64.24260 * 16 14 13 36 36 H 1.09002 * 109.47051 * 184.24051 * 16 14 13 37 37 H 0.97001 * 120.00064 * 0.02562 * 17 16 14 38 38 H 1.08999 * 109.46456 * 60.01778 * 20 18 17 39 39 H 1.08000 * 119.20608 * 123.32159 * 21 20 18 40 40 H 1.08001 * 118.46806 * 180.98692 * 22 21 20 41 41 H 1.07994 * 117.40385 * 139.58506 * 23 22 21 42 42 H 1.07996 * 117.40143 * 179.97438 * 24 23 22 43 43 H 1.07998 * 118.48957 * 220.40778 * 25 24 23 44 44 H 1.08003 * 119.19478 * 179.04728 * 26 25 24 45 45 H 1.09003 * 109.98761 * 176.12288 * 27 14 13 46 46 H 1.08997 * 109.98917 * 297.39577 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0448 -1.2286 -0.3082 9 7 1.3831 -2.3547 0.3926 10 6 1.8476 -3.6313 -0.0664 11 6 1.2112 -4.1648 -1.3791 12 6 -0.3082 -3.8492 -1.3647 13 8 -0.8302 -4.0078 -0.0792 14 6 -0.9708 -2.7223 0.5165 15 1 -1.1356 -1.9891 -0.2730 16 6 -2.2000 -2.7379 1.4273 17 7 -3.3745 -3.1517 0.6555 18 6 -4.5785 -3.2376 1.2549 19 8 -4.6899 -2.9718 2.4330 20 6 -5.7866 -3.6638 0.4611 21 6 -6.0104 -2.6976 -0.6680 22 6 -6.1696 -1.4027 -0.4505 23 6 -6.1222 -0.8107 0.8744 24 6 -6.6549 -1.3419 1.9706 25 6 -7.3736 -2.6023 2.0256 26 6 -6.9943 -3.6783 1.3556 27 6 0.1945 -2.3053 1.3082 28 1 -0.4850 0.8401 -0.0004 29 1 1.6627 -4.3616 0.7214 30 1 2.9251 -3.5623 -0.2155 31 1 1.3597 -5.2427 -1.4450 32 1 1.6774 -3.6772 -2.2352 33 1 -0.8223 -4.5258 -2.0475 34 1 -0.4650 -2.8215 -1.6922 35 1 -2.0371 -3.4394 2.2455 36 1 -2.3648 -1.7394 1.8323 37 1 -3.2855 -3.3639 -0.2868 38 1 -5.6218 -4.6627 0.0572 39 1 -6.0415 -3.0695 -1.6815 40 1 -6.3434 -0.7559 -1.2978 41 1 -5.6135 0.1363 0.9778 42 1 -6.5444 -0.7921 2.8935 43 1 -8.2582 -2.6645 2.6420 44 1 -7.5666 -4.5889 1.4539 45 1 0.0502 -1.2899 1.6772 46 1 0.3401 -2.9884 2.1450 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073620675.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:19 Heat of formation + Delta-G solvation = -9.513248 kcal Electronic energy + Delta-G solvation = -27988.975119 eV Core-core repulsion = 24266.216963 eV Total energy + Delta-G solvation = -3722.758156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44775 -40.53570 -38.17186 -36.78765 -35.87710 -33.97279 -33.40568 -33.17586 -32.62278 -30.28460 -27.93388 -27.06352 -26.48736 -24.48592 -24.24235 -22.37334 -21.96174 -21.29471 -19.66313 -18.92656 -18.46293 -18.11935 -17.65395 -17.50528 -16.86504 -16.54984 -16.23004 -15.88628 -15.65149 -15.50102 -15.10250 -14.88343 -14.68052 -14.39869 -14.16662 -13.77094 -13.57265 -13.39038 -13.29159 -13.09535 -12.91579 -12.84272 -12.60820 -12.50381 -12.31808 -11.92835 -11.83231 -11.74466 -11.37505 -11.18914 -11.14648 -10.87542 -10.55621 -10.27559 -10.15453 -9.95843 -9.11571 -8.71250 -7.89745 -5.30429 0.35629 1.11591 1.46060 1.50711 1.57890 1.75473 2.26466 2.43922 2.52852 3.12796 3.27851 3.51612 3.81765 3.90952 4.04210 4.11986 4.19472 4.22962 4.29064 4.35552 4.39106 4.43347 4.55200 4.59012 4.73324 4.79292 4.80402 4.81277 4.99686 5.02029 5.06182 5.08627 5.18840 5.19714 5.35231 5.41109 5.47177 5.54850 5.57399 5.67930 5.68660 5.85043 5.88586 5.95211 6.36080 6.52844 6.69507 7.10488 7.37941 7.83161 8.36099 9.15876 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.004055 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.246560 B = 6903.104742 C = 7899.015890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.035 4.035 3 Si 0.957 3.043 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.265 4.265 8 H 0.063 0.937 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.165 4.165 12 C 0.068 3.932 13 O -0.366 6.366 14 C 0.083 3.917 15 H 0.083 0.917 16 C 0.138 3.862 17 N -0.705 5.705 18 C 0.515 3.485 19 O -0.574 6.574 20 C -0.048 4.048 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.158 4.158 24 C -0.090 4.090 25 C -0.120 4.120 26 C -0.128 4.128 27 C 0.145 3.855 28 H 0.250 0.750 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.035 0.965 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.408 0.592 38 H 0.136 0.864 39 H 0.154 0.846 40 H 0.133 0.867 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.148 0.852 45 H 0.076 0.924 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -8.216 -3.415 16.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.231 4.231 3 Si 0.786 3.214 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.204 1.204 7 C -0.395 4.395 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.206 4.206 12 C -0.010 4.010 13 O -0.284 6.284 14 C 0.024 3.976 15 H 0.101 0.899 16 C 0.013 3.987 17 N -0.356 5.356 18 C 0.302 3.698 19 O -0.454 6.454 20 C -0.069 4.069 21 C -0.156 4.156 22 C -0.140 4.140 23 C -0.176 4.176 24 C -0.108 4.108 25 C -0.138 4.138 26 C -0.146 4.146 27 C 0.020 3.980 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.243 0.757 38 H 0.154 0.846 39 H 0.172 0.828 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.094 0.906 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -13.624 -8.054 -2.453 16.016 hybrid contribution 0.907 1.583 -0.283 1.847 sum -12.717 -6.471 -2.736 14.529 Atomic orbital electron populations 1.70002 1.05842 1.25626 1.54667 1.25460 0.96006 1.00466 1.01174 0.85445 0.78118 0.80455 0.77349 1.21333 1.22070 1.20426 1.19401 0.93685 0.86394 1.40034 0.91913 1.44225 1.34585 1.01964 1.51487 1.20496 0.95998 0.86710 0.94214 1.23494 0.96687 1.00648 0.99722 1.22405 0.93821 1.00138 0.84595 1.87506 1.83384 1.28135 1.29388 1.21691 0.93447 0.84706 0.97756 0.89931 1.21253 0.84468 0.98757 0.94231 1.45740 1.07147 1.68536 1.14161 1.21063 0.84618 0.76450 0.87627 1.90653 1.85782 1.50955 1.17982 1.19371 0.90966 1.02060 0.94546 1.23157 1.01101 0.92555 0.98836 1.21287 1.00220 0.96399 0.96131 1.21148 1.01374 1.01424 0.93667 1.21137 0.96405 0.96145 0.97076 1.21218 0.99774 0.92928 0.99889 1.23030 0.97229 0.99127 0.95209 1.20652 0.86383 0.99918 0.91022 0.94058 0.94791 0.95144 0.90250 0.92779 0.89327 0.94666 0.92879 0.92891 0.75672 0.84648 0.82800 0.84941 0.88352 0.88114 0.84811 0.83473 0.90585 0.96009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.71 9.57 21.65 0.21 -48.51 16 2 C -0.03 -1.81 4.92 84.86 0.42 -1.39 16 3 Si 0.96 43.29 29.60 68.60 2.03 45.32 16 4 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.27 -13.96 9.61 84.03 0.81 -13.15 16 8 H 0.06 3.30 7.87 -2.91 -0.02 3.28 16 9 N -0.60 -29.02 2.62 -706.06 -1.85 -30.87 16 10 C 0.15 6.36 5.33 87.75 0.47 6.82 16 11 C -0.16 -5.75 6.75 32.14 0.22 -5.53 16 12 C 0.07 2.37 6.38 72.73 0.46 2.84 16 13 O -0.37 -13.64 9.34 -137.26 -1.28 -14.92 16 14 C 0.08 3.39 2.01 28.71 0.06 3.45 16 15 H 0.08 3.85 5.25 -2.39 -0.01 3.83 16 16 C 0.14 5.26 5.26 86.38 0.45 5.72 16 17 N -0.71 -22.34 5.30 -463.05 -2.45 -24.80 16 18 C 0.52 15.98 5.48 87.66 0.48 16.46 16 19 O -0.57 -21.98 13.67 -3.04 -0.04 -22.02 16 20 C -0.05 -1.06 2.89 -13.29 -0.04 -1.09 16 21 C -0.14 -2.73 8.89 24.50 0.22 -2.51 16 22 C -0.12 -2.84 9.58 23.00 0.22 -2.62 16 23 C -0.16 -4.42 8.53 22.89 0.20 -4.23 16 24 C -0.09 -2.51 7.35 22.89 0.17 -2.34 16 25 C -0.12 -2.85 9.09 22.99 0.21 -2.64 16 26 C -0.13 -2.70 8.78 24.49 0.21 -2.49 16 27 C 0.15 6.73 4.70 83.79 0.39 7.12 16 28 H 0.25 13.18 8.31 -92.70 -0.77 12.41 16 29 H 0.03 1.36 7.99 -2.39 -0.02 1.35 16 30 H 0.03 1.25 7.95 -2.39 -0.02 1.23 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.03 1.44 6.66 -2.39 -0.02 1.42 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.41 11.42 8.07 -92.71 -0.75 10.68 16 38 H 0.14 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 40 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 41 H 0.10 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.10 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.13 2.51 8.06 -2.91 -0.02 2.49 16 44 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 46 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -62.73 360.44 1.78 -60.95 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.22 Total: 30.43 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 4.95 Total: 4.42 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -4.10 Total: -104.17 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.32 Total: -36.94 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -62.73 1.78 -60.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073620675.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.434 kcal (2) G-P(sol) polarization free energy of solvation -62.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds