Wall clock time and date at job start Tue Mar 31 2020 12:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47217 * 270.00609 * 3 2 1 5 5 H 1.48501 * 109.46783 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.47287 * 149.99776 * 3 2 1 7 7 C 1.38814 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99893 * 195.46765 * 7 2 1 9 9 N 1.36940 * 120.00188 * 15.46350 * 7 2 1 10 10 C 1.47511 * 118.75480 * 26.09655 * 9 7 2 11 11 C 1.53576 * 111.02254 * 138.37630 * 10 9 7 12 12 C 1.51537 * 109.58154 * 320.01939 * 11 10 9 13 13 O 1.42159 * 108.76154 * 91.40098 * 12 11 10 14 14 C 1.38010 * 119.43975 * 272.78221 * 13 12 11 15 15 H 1.09007 * 109.46823 * 303.42234 * 14 13 12 16 16 C 1.52992 * 109.47120 * 183.42914 * 14 13 12 17 17 N 1.46503 * 109.47604 * 64.99564 * 16 14 13 18 18 C 1.34770 * 120.00018 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00597 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99597 * 180.27542 * 18 17 16 21 21 C 1.50288 * 109.46755 * 299.74791 * 20 18 17 22 22 C 1.32319 * 121.60334 * 303.32959 * 21 20 18 23 23 C 1.45207 * 123.00310 * 1.01381 * 22 21 20 24 24 C 1.32936 * 125.19711 * 319.52487 * 23 22 21 25 25 C 1.45195 * 125.20201 * 0.02562 * 24 23 22 26 26 C 1.32296 * 123.02400 * 40.42726 * 25 24 23 27 27 C 1.45119 * 118.75705 * 206.10301 * 9 7 2 28 28 H 0.96997 * 120.00190 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.16530 * 17.97800 * 10 9 7 30 30 H 1.09000 * 109.12798 * 258.74560 * 10 9 7 31 31 H 1.09006 * 109.44912 * 199.98874 * 11 10 9 32 32 H 1.09000 * 109.43424 * 80.04345 * 11 10 9 33 33 H 1.09000 * 109.58755 * 331.62305 * 12 11 10 34 34 H 1.08996 * 109.58668 * 211.18465 * 12 11 10 35 35 H 1.09007 * 109.47214 * 304.99653 * 16 14 13 36 36 H 1.09007 * 109.47136 * 184.99749 * 16 14 13 37 37 H 0.97003 * 119.99242 * 0.02562 * 17 16 14 38 38 H 1.09000 * 109.46874 * 59.73513 * 20 18 17 39 39 H 1.08006 * 119.20038 * 123.31845 * 21 20 18 40 40 H 1.07999 * 118.51142 * 180.97599 * 22 21 20 41 41 H 1.08001 * 117.39639 * 139.55335 * 23 22 21 42 42 H 1.08003 * 117.39537 * 180.02562 * 24 23 22 43 43 H 1.08007 * 118.49012 * 220.41216 * 25 24 23 44 44 H 1.08006 * 119.20496 * 179.04961 * 26 25 24 45 45 H 1.09000 * 109.45896 * 149.27014 * 27 9 7 46 46 H 1.08999 * 109.46529 * 29.30682 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2192 0.2489 9 7 1.3628 -2.3665 -0.3173 10 6 0.1710 -2.3026 -1.1842 11 6 0.1767 -3.4424 -2.2135 12 6 1.5842 -3.6479 -2.7359 13 8 2.2338 -4.6215 -1.9291 14 6 2.8926 -4.2232 -0.7837 15 1 3.6427 -3.4742 -1.0378 16 6 3.5762 -5.4321 -0.1420 17 7 4.6226 -5.9334 -1.0365 18 6 5.3619 -7.0013 -0.6769 19 8 5.1613 -7.5472 0.3874 20 6 6.4424 -7.5131 -1.5943 21 6 5.8332 -7.9238 -2.9054 22 6 4.8629 -8.8212 -2.9682 23 6 4.2983 -9.4593 -1.7924 24 6 4.9936 -9.8784 -0.7397 25 6 6.4336 -9.7677 -0.5898 26 6 7.1170 -8.6977 -0.9617 27 6 1.8750 -3.6166 0.2128 28 1 -0.4850 0.8400 0.0004 29 1 0.1607 -1.3469 -1.7084 30 1 -0.7241 -2.3819 -0.5673 31 1 -0.4843 -3.1867 -3.0417 32 1 -0.1725 -4.3601 -1.7402 33 1 2.1332 -2.7074 -2.6869 34 1 1.5437 -3.9964 -3.7679 35 1 2.8395 -6.2168 0.0309 36 1 4.0214 -5.1360 0.8080 37 1 4.7832 -5.4966 -1.8875 38 1 7.1764 -6.7257 -1.7657 39 1 6.1961 -7.4755 -3.8185 40 1 4.4724 -9.0912 -3.9383 41 1 3.2284 -9.6054 -1.7716 42 1 4.4436 -10.3379 0.0683 43 1 6.9715 -10.5969 -0.1543 44 1 8.1857 -8.6751 -0.8072 45 1 1.0502 -4.3140 0.3590 46 1 2.3675 -3.4317 1.1674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073620676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:23 Heat of formation + Delta-G solvation = -0.290076 kcal Electronic energy + Delta-G solvation = -27426.929046 eV Core-core repulsion = 23704.570836 eV Total energy + Delta-G solvation = -3722.358210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.39111 -38.95900 -37.21194 -35.23138 -34.56943 -32.72815 -32.36140 -31.82750 -31.45395 -28.61969 -26.65416 -25.53621 -25.04621 -23.65670 -22.77632 -20.95418 -20.76404 -19.58234 -18.69272 -17.63352 -17.28185 -16.99374 -16.56617 -16.10986 -15.75862 -15.18171 -14.86947 -14.69451 -14.34425 -14.26288 -13.80709 -13.66297 -13.28936 -12.97595 -12.70757 -12.59629 -12.33790 -12.14550 -12.07410 -11.97765 -11.39489 -11.21588 -11.02979 -10.97618 -10.84822 -10.65780 -10.29452 -10.23830 -9.90270 -9.83892 -9.75925 -9.69928 -9.32808 -8.83880 -8.81378 -8.45326 -8.24285 -6.77247 -5.85727 -3.30719 1.18158 1.92588 2.77206 3.15128 3.32061 3.39496 3.40628 3.46632 4.18252 4.42729 4.62805 4.71614 4.83132 5.01134 5.01885 5.13443 5.20769 5.33670 5.35977 5.51752 5.57464 5.64065 5.71174 5.82193 5.87498 5.88133 6.01117 6.05416 6.17259 6.27602 6.34938 6.35685 6.43814 6.53115 6.65583 6.68640 6.70061 6.70585 6.74304 6.78676 6.82298 7.33849 7.61493 7.72266 7.75037 8.22220 8.37395 8.42933 9.15355 9.80115 10.26276 11.21758 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022396 B = 0.003110 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.950323 B = 9000.666068 C = 9481.520292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.176 4.176 12 C 0.088 3.912 13 O -0.394 6.394 14 C 0.068 3.932 15 H 0.050 0.950 16 C 0.135 3.865 17 N -0.716 5.716 18 C 0.521 3.479 19 O -0.536 6.536 20 C -0.048 4.048 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.145 4.145 24 C -0.076 4.076 25 C -0.103 4.103 26 C -0.128 4.128 27 C 0.128 3.872 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.401 0.599 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.043 0.957 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.581 -15.980 -7.234 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.395 4.395 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.313 6.313 14 C 0.006 3.994 15 H 0.068 0.932 16 C 0.011 3.989 17 N -0.367 5.367 18 C 0.306 3.694 19 O -0.413 6.413 20 C -0.070 4.070 21 C -0.166 4.166 22 C -0.121 4.121 23 C -0.163 4.163 24 C -0.094 4.094 25 C -0.121 4.121 26 C -0.146 4.146 27 C -0.001 4.001 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.235 0.765 38 H 0.123 0.877 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.061 0.939 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.245 -16.377 -6.469 20.372 hybrid contribution 0.334 1.514 -0.359 1.591 sum 10.579 -14.863 -6.828 19.480 Atomic orbital electron populations 1.70069 1.05241 1.25568 1.53731 1.25049 0.95297 0.98419 1.00456 0.86290 0.79150 0.83630 0.77696 1.21410 1.21690 1.20386 1.19235 0.92401 0.84880 1.43005 0.91569 1.43837 1.31489 1.01554 1.54408 1.20995 0.88433 0.95436 0.89902 1.22773 0.97104 1.01304 1.00382 1.22002 0.92767 0.92211 0.91799 1.86083 1.70654 1.37849 1.36759 1.22607 0.94794 0.93937 0.88072 0.93174 1.21374 0.89005 0.95868 0.92667 1.45911 1.36304 1.31607 1.22860 1.20339 0.82393 0.79798 0.86889 1.90679 1.69070 1.57450 1.24065 1.19225 0.96541 0.97857 0.93365 1.22891 0.97115 0.99984 0.96655 1.21119 0.96438 0.96627 0.97957 1.21021 0.99533 1.01423 0.94327 1.21015 0.93748 0.98309 0.96337 1.21001 0.93748 0.98091 0.99270 1.22687 0.99267 0.94261 0.98387 1.21411 0.95128 0.88935 0.94670 0.93557 0.90642 0.95507 0.92146 0.92418 0.92104 0.91316 0.91241 0.90461 0.76487 0.87708 0.86055 0.86470 0.87066 0.87047 0.86681 0.86398 0.93888 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.54 11.00 55.49 0.61 -24.93 16 2 C 0.01 0.18 4.89 -17.43 -0.09 0.10 16 3 Si 0.90 21.19 29.58 -169.99 -5.03 16.16 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.27 -7.01 9.46 -15.06 -0.14 -7.16 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.25 2.23 -172.02 -0.38 -14.63 16 10 C 0.18 4.13 4.70 -3.19 -0.02 4.11 16 11 C -0.18 -3.29 5.79 -27.17 -0.16 -3.45 16 12 C 0.09 1.54 6.38 36.42 0.23 1.77 16 13 O -0.39 -6.92 9.38 -26.52 -0.25 -7.17 16 14 C 0.07 1.18 2.68 -25.78 -0.07 1.11 16 15 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 16 C 0.13 2.09 5.34 -4.04 -0.02 2.07 16 17 N -0.72 -9.76 5.39 -60.29 -0.33 -10.09 16 18 C 0.52 7.22 5.48 -10.99 -0.06 7.16 16 19 O -0.54 -9.10 13.67 5.56 0.08 -9.02 16 20 C -0.05 -0.51 2.89 -94.47 -0.27 -0.79 16 21 C -0.15 -1.41 8.90 -36.43 -0.32 -1.74 16 22 C -0.10 -1.07 9.58 -38.74 -0.37 -1.44 16 23 C -0.15 -1.70 8.53 -38.65 -0.33 -2.03 16 24 C -0.08 -0.91 7.35 -38.66 -0.28 -1.20 16 25 C -0.10 -1.13 9.09 -38.75 -0.35 -1.48 16 26 C -0.13 -1.33 8.78 -36.43 -0.32 -1.65 16 27 C 0.13 2.63 5.12 -3.83 -0.02 2.61 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 1.94 6.37 -51.93 -0.33 1.61 16 30 H 0.03 0.69 8.04 -51.93 -0.42 0.27 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 33 H 0.06 1.18 7.40 -51.93 -0.38 0.80 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.40 4.89 8.35 -40.82 -0.34 4.55 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 41 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 44 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 46 H 0.05 1.14 7.98 -51.93 -0.41 0.72 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -30.70 365.16 -9.74 -40.43 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -7.35 Total: 5.73 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -2.59 Total: -1.99 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.10 Total: -49.65 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.17 Total: -16.19 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.70 -9.74 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073620676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.144 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds