Wall clock time and date at job start Tue Mar 31 2020 12:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48496 * 109.47217 * 270.00609 * 3 2 1 5 5 H 1.48501 * 109.46783 * 30.00070 * 3 2 1 6 6 H 1.48500 * 109.47287 * 149.99776 * 3 2 1 7 7 C 1.38814 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99893 * 195.46765 * 7 2 1 9 9 N 1.36940 * 120.00188 * 15.46350 * 7 2 1 10 10 C 1.47511 * 118.75480 * 26.09655 * 9 7 2 11 11 C 1.53576 * 111.02254 * 138.37630 * 10 9 7 12 12 C 1.51537 * 109.58154 * 320.01939 * 11 10 9 13 13 O 1.42159 * 108.76154 * 91.40098 * 12 11 10 14 14 C 1.38010 * 119.43975 * 272.78221 * 13 12 11 15 15 H 1.09007 * 109.46823 * 303.42234 * 14 13 12 16 16 C 1.52992 * 109.47120 * 183.42914 * 14 13 12 17 17 N 1.46503 * 109.47604 * 64.99564 * 16 14 13 18 18 C 1.34770 * 120.00018 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00597 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99597 * 180.27542 * 18 17 16 21 21 C 1.50288 * 109.46755 * 299.74791 * 20 18 17 22 22 C 1.32319 * 121.60334 * 303.32959 * 21 20 18 23 23 C 1.45207 * 123.00310 * 1.01381 * 22 21 20 24 24 C 1.32936 * 125.19711 * 319.52487 * 23 22 21 25 25 C 1.45195 * 125.20201 * 0.02562 * 24 23 22 26 26 C 1.32296 * 123.02400 * 40.42726 * 25 24 23 27 27 C 1.45119 * 118.75705 * 206.10301 * 9 7 2 28 28 H 0.96997 * 120.00190 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.16530 * 17.97800 * 10 9 7 30 30 H 1.09000 * 109.12798 * 258.74560 * 10 9 7 31 31 H 1.09006 * 109.44912 * 199.98874 * 11 10 9 32 32 H 1.09000 * 109.43424 * 80.04345 * 11 10 9 33 33 H 1.09000 * 109.58755 * 331.62305 * 12 11 10 34 34 H 1.08996 * 109.58668 * 211.18465 * 12 11 10 35 35 H 1.09007 * 109.47214 * 304.99653 * 16 14 13 36 36 H 1.09007 * 109.47136 * 184.99749 * 16 14 13 37 37 H 0.97003 * 119.99242 * 0.02562 * 17 16 14 38 38 H 1.09000 * 109.46874 * 59.73513 * 20 18 17 39 39 H 1.08006 * 119.20038 * 123.31845 * 21 20 18 40 40 H 1.07999 * 118.51142 * 180.97599 * 22 21 20 41 41 H 1.08001 * 117.39639 * 139.55335 * 23 22 21 42 42 H 1.08003 * 117.39537 * 180.02562 * 24 23 22 43 43 H 1.08007 * 118.49012 * 220.41216 * 25 24 23 44 44 H 1.08006 * 119.20496 * 179.04961 * 26 25 24 45 45 H 1.09000 * 109.45896 * 149.27014 * 27 9 7 46 46 H 1.08999 * 109.46529 * 29.30682 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2192 0.2489 9 7 1.3628 -2.3665 -0.3173 10 6 0.1710 -2.3026 -1.1842 11 6 0.1767 -3.4424 -2.2135 12 6 1.5842 -3.6479 -2.7359 13 8 2.2338 -4.6215 -1.9291 14 6 2.8926 -4.2232 -0.7837 15 1 3.6427 -3.4742 -1.0378 16 6 3.5762 -5.4321 -0.1420 17 7 4.6226 -5.9334 -1.0365 18 6 5.3619 -7.0013 -0.6769 19 8 5.1613 -7.5472 0.3874 20 6 6.4424 -7.5131 -1.5943 21 6 5.8332 -7.9238 -2.9054 22 6 4.8629 -8.8212 -2.9682 23 6 4.2983 -9.4593 -1.7924 24 6 4.9936 -9.8784 -0.7397 25 6 6.4336 -9.7677 -0.5898 26 6 7.1170 -8.6977 -0.9617 27 6 1.8750 -3.6166 0.2128 28 1 -0.4850 0.8400 0.0004 29 1 0.1607 -1.3469 -1.7084 30 1 -0.7241 -2.3819 -0.5673 31 1 -0.4843 -3.1867 -3.0417 32 1 -0.1725 -4.3601 -1.7402 33 1 2.1332 -2.7074 -2.6869 34 1 1.5437 -3.9964 -3.7679 35 1 2.8395 -6.2168 0.0309 36 1 4.0214 -5.1360 0.8080 37 1 4.7832 -5.4966 -1.8875 38 1 7.1764 -6.7257 -1.7657 39 1 6.1961 -7.4755 -3.8185 40 1 4.4724 -9.0912 -3.9383 41 1 3.2284 -9.6054 -1.7716 42 1 4.4436 -10.3379 0.0683 43 1 6.9715 -10.5969 -0.1543 44 1 8.1857 -8.6751 -0.8072 45 1 1.0502 -4.3140 0.3590 46 1 2.3675 -3.4317 1.1674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073620676.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:23 Heat of formation + Delta-G solvation = -18.427755 kcal Electronic energy + Delta-G solvation = -27427.715555 eV Core-core repulsion = 23704.570836 eV Total energy + Delta-G solvation = -3723.144718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.41791 -40.43113 -38.19399 -36.97060 -35.86403 -33.87007 -33.47579 -33.15767 -32.94099 -30.13933 -27.81872 -27.15962 -26.60385 -24.49495 -24.30203 -22.28294 -22.02345 -21.32186 -19.66284 -18.86983 -18.46822 -18.08136 -17.65208 -17.56295 -17.10942 -16.77960 -16.37856 -15.89284 -15.67427 -15.52557 -15.08622 -14.86280 -14.76338 -14.36571 -14.22124 -13.74334 -13.57894 -13.36188 -13.13363 -13.08128 -12.97977 -12.83338 -12.78309 -12.49199 -12.40509 -12.06529 -11.79465 -11.75645 -11.48714 -11.31126 -11.14076 -10.87597 -10.54279 -10.27465 -10.14554 -9.98642 -9.09749 -8.73258 -7.89974 -5.37707 0.37985 1.13339 1.45936 1.47018 1.55748 1.74789 2.26296 2.40486 2.50671 2.77422 3.25196 3.56147 3.82365 3.91973 4.04799 4.07867 4.14160 4.17880 4.21980 4.25323 4.34224 4.38574 4.53551 4.58358 4.59727 4.67347 4.74457 4.81254 4.86308 4.90930 5.04422 5.08819 5.13962 5.18443 5.24607 5.45966 5.51211 5.58478 5.60355 5.70632 5.74248 5.87295 5.90487 5.96949 6.34704 6.66979 6.75840 7.13382 7.36680 7.85360 8.26788 9.15710 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022396 B = 0.003110 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.950323 B = 9000.666068 C = 9481.520292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.270 4.270 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.186 3.814 11 C -0.164 4.164 12 C 0.092 3.908 13 O -0.390 6.390 14 C 0.089 3.911 15 H 0.045 0.955 16 C 0.147 3.853 17 N -0.710 5.710 18 C 0.517 3.483 19 O -0.571 6.571 20 C -0.050 4.050 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.155 4.155 24 C -0.092 4.092 25 C -0.120 4.120 26 C -0.131 4.131 27 C 0.123 3.877 28 H 0.250 0.750 29 H 0.047 0.953 30 H -0.008 1.008 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.108 0.892 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.411 0.589 38 H 0.134 0.866 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.143 0.857 45 H 0.040 0.960 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.828 -16.448 -9.160 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.400 4.400 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.061 3.939 11 C -0.203 4.203 12 C 0.016 3.984 13 O -0.309 6.309 14 C 0.028 3.972 15 H 0.063 0.937 16 C 0.022 3.978 17 N -0.362 5.362 18 C 0.305 3.695 19 O -0.450 6.450 20 C -0.071 4.071 21 C -0.157 4.157 22 C -0.138 4.138 23 C -0.173 4.173 24 C -0.110 4.110 25 C -0.138 4.138 26 C -0.149 4.149 27 C -0.005 4.005 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.152 0.848 39 H 0.170 0.830 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.161 0.839 45 H 0.058 0.942 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.522 -16.874 -8.419 22.637 hybrid contribution -0.408 1.607 0.305 1.686 sum 12.113 -15.267 -8.114 21.111 Atomic orbital electron populations 1.70233 1.06639 1.25826 1.55366 1.25783 0.96013 1.01444 1.00888 0.85292 0.78065 0.79570 0.77663 1.20900 1.22415 1.19380 1.19528 0.92613 0.85882 1.41996 0.91407 1.44037 1.31562 1.02111 1.55057 1.20772 0.86918 0.96101 0.90111 1.22630 0.98901 0.99120 0.99688 1.22067 0.91220 0.91615 0.93487 1.86112 1.70519 1.37851 1.36448 1.22246 0.93548 0.94351 0.87100 0.93668 1.21076 0.89305 0.94618 0.92796 1.45808 1.35696 1.31755 1.22910 1.20995 0.82597 0.79060 0.86883 1.90671 1.70137 1.58372 1.25841 1.19368 0.95922 0.98757 0.93012 1.23143 0.96211 0.99198 0.97126 1.21308 0.97301 0.97226 0.97999 1.21174 0.99396 1.01655 0.95067 1.21133 0.94695 0.98782 0.96383 1.21217 0.93293 0.99221 1.00093 1.23013 1.00561 0.93678 0.97627 1.21563 0.95737 0.87759 0.95430 0.94111 0.93460 0.99028 0.89691 0.92296 0.94113 0.87370 0.92332 0.90749 0.75322 0.84797 0.82982 0.84764 0.87787 0.88012 0.85147 0.83890 0.94184 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 11.00 21.65 0.24 -54.17 16 2 C -0.05 -2.49 4.89 84.86 0.41 -2.08 16 3 Si 0.97 43.87 29.58 68.60 2.03 45.90 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 7 C -0.27 -14.38 9.46 84.03 0.80 -13.59 16 8 H 0.07 3.52 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -29.55 2.23 -698.15 -1.55 -31.10 16 10 C 0.19 8.85 4.70 86.38 0.41 9.25 16 11 C -0.16 -5.93 5.79 30.31 0.18 -5.75 16 12 C 0.09 2.99 6.38 71.50 0.46 3.45 16 13 O -0.39 -12.85 9.38 -117.80 -1.11 -13.96 16 14 C 0.09 3.02 2.68 31.21 0.08 3.10 16 15 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 16 C 0.15 4.42 5.34 86.38 0.46 4.88 16 17 N -0.71 -17.92 5.39 -463.06 -2.50 -20.42 16 18 C 0.52 13.40 5.48 87.66 0.48 13.88 16 19 O -0.57 -19.00 13.67 -3.03 -0.04 -19.04 16 20 C -0.05 -0.89 2.89 -13.29 -0.04 -0.93 16 21 C -0.14 -2.16 8.90 24.48 0.22 -1.94 16 22 C -0.12 -2.22 9.58 22.99 0.22 -2.00 16 23 C -0.15 -3.54 8.53 22.89 0.20 -3.35 16 24 C -0.09 -2.19 7.35 22.88 0.17 -2.02 16 25 C -0.12 -2.49 9.09 22.99 0.21 -2.28 16 26 C -0.13 -2.39 8.78 24.49 0.21 -2.17 16 27 C 0.12 5.08 5.12 87.25 0.45 5.53 16 28 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 29 H 0.05 2.50 6.37 -2.39 -0.02 2.48 16 30 H -0.01 -0.45 8.04 -2.39 -0.02 -0.47 16 31 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 33 H 0.04 1.51 7.40 -2.39 -0.02 1.50 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.41 8.79 8.35 -92.71 -0.77 8.01 16 38 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 39 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 40 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.10 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.10 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 44 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.04 1.66 8.11 -2.39 -0.02 1.64 16 46 H 0.05 2.06 7.98 -2.39 -0.02 2.04 16 Total: -1.00 -67.74 365.16 2.16 -65.57 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.19 Total: 23.23 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 4.91 Total: 3.99 kcal Atomic # 7 Polarization: -101.88 SS G_CDS: -3.81 Total: -105.69 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.15 Total: -33.00 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.74 2.16 -65.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073620676.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.147 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds