Wall clock time and date at job start Tue Mar 31 2020 12:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 120.00118 * 2 1 4 4 C 1.38233 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99787 * 359.97214 * 4 3 2 6 6 C 1.50703 * 119.99948 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47173 * 0.02562 * 6 5 4 8 8 C 1.52994 * 109.46969 * 119.99743 * 6 5 4 9 9 C 1.50703 * 109.47289 * 240.00175 * 6 5 4 10 10 O 1.21283 * 119.99825 * 359.97438 * 9 6 5 11 11 N 1.34770 * 119.99899 * 180.02562 * 9 6 5 12 12 C 1.46498 * 119.99990 * 180.02562 * 11 9 6 13 13 H 1.09002 * 110.63913 * 31.85510 * 12 11 9 14 14 C 1.54335 * 111.00148 * 268.78050 * 12 11 9 15 15 N 1.47021 * 107.26526 * 219.60265 * 14 12 11 16 16 C 1.36934 * 125.64867 * 178.84756 * 15 14 12 17 17 H 1.08004 * 120.00035 * 342.88139 * 16 15 14 18 18 C 1.38812 * 120.00404 * 162.87654 * 16 15 14 19 19 N 1.31622 * 119.99728 * 331.97362 * 18 16 15 20 20 Si 1.86799 * 120.00267 * 151.97240 * 18 16 15 21 21 H 1.48506 * 109.46858 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47388 * 60.00205 * 20 18 16 23 23 H 1.48501 * 109.46953 * 300.00008 * 20 18 16 24 24 C 1.47421 * 108.70506 * 358.58056 * 15 14 12 25 25 C 1.54910 * 104.83090 * 24.35923 * 24 15 14 26 26 H 1.09001 * 111.00589 * 81.10302 * 25 24 15 27 27 O 1.42902 * 111.00509 * 204.91819 * 25 24 15 28 28 C 1.38236 * 120.00414 * 0.28045 * 5 4 3 29 29 C 1.38234 * 119.99474 * 359.53122 * 28 5 4 30 30 H 1.09005 * 109.46828 * 90.00387 * 1 2 3 31 31 H 1.08997 * 109.47083 * 210.00379 * 1 2 3 32 32 H 1.09000 * 109.46963 * 330.00832 * 1 2 3 33 33 H 1.08000 * 119.99699 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.99899 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47183 * 60.00883 * 8 6 5 36 36 H 1.08999 * 109.47060 * 180.02562 * 8 6 5 37 37 H 1.08992 * 109.47625 * 300.00258 * 8 6 5 38 38 H 0.97003 * 120.00448 * 359.97438 * 11 9 6 39 39 H 1.09002 * 109.99582 * 100.12211 * 14 12 11 40 40 H 1.08999 * 109.77686 * 338.95392 * 14 12 11 41 41 H 0.97004 * 120.00411 * 353.95791 * 19 18 16 42 42 H 1.09000 * 110.37006 * 143.19570 * 24 15 14 43 43 H 1.09005 * 110.36937 * 265.52137 * 24 15 14 44 44 H 0.96703 * 114.00038 * 298.54291 * 27 25 24 45 45 H 1.07997 * 120.00343 * 179.72753 * 28 5 4 46 46 H 1.08001 * 120.00215 * 180.22920 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 0.0017 6 6 5.7787 0.0000 0.0028 7 1 6.1421 1.0276 0.0031 8 6 6.2877 -0.7206 1.2528 9 6 6.2821 -0.7110 -1.2269 10 8 5.4945 -1.1727 -2.0254 11 7 7.6072 -0.8347 -1.4388 12 6 8.0965 -1.5253 -2.6345 13 1 7.4087 -1.3842 -3.4682 14 6 8.3089 -3.0286 -2.3570 15 7 9.5422 -3.4302 -3.0493 16 6 10.0938 -4.6834 -3.0345 17 1 9.7938 -5.3966 -2.2810 18 6 11.0385 -5.0373 -3.9880 19 7 11.0231 -4.4655 -5.1735 20 14 12.3315 -6.3250 -3.5889 21 1 13.2151 -6.5207 -4.7663 22 1 11.6646 -7.6081 -3.2513 23 1 13.1430 -5.8695 -2.4317 24 6 10.0832 -2.2618 -3.7672 25 6 9.5202 -1.0344 -3.0082 26 1 10.1084 -0.8237 -2.1151 27 8 9.4596 0.1112 -3.8603 28 6 3.5806 -1.1972 -0.0036 29 6 2.1983 -1.1972 -0.0002 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 1.6582 2.1324 -0.0004 34 1 4.1205 2.1325 0.0001 35 1 5.9244 -1.7484 1.2530 36 1 7.3777 -0.7202 1.2539 37 1 5.9237 -0.2064 2.1422 38 1 8.2371 -0.4658 -0.8000 39 1 7.4648 -3.6014 -2.7412 40 1 8.4148 -3.1944 -1.2849 41 1 10.3015 -3.8627 -5.4119 42 1 11.1726 -2.2642 -3.7294 43 1 9.7388 -2.2591 -4.8014 44 1 10.3197 0.3956 -4.1988 45 1 4.1206 -2.1325 -0.0072 46 1 1.6582 -2.1324 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078024835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:41 Heat of formation + Delta-G solvation = -44.792202 kcal Electronic energy + Delta-G solvation = -26655.839906 eV Core-core repulsion = 22931.551939 eV Total energy + Delta-G solvation = -3724.287967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.40018 -39.14165 -37.96751 -35.31487 -34.70978 -34.21293 -31.99249 -31.20560 -30.90784 -28.32308 -27.30338 -26.83530 -24.61177 -23.83712 -22.80727 -21.45352 -20.77489 -20.28976 -19.78032 -17.69805 -17.20708 -16.94337 -16.49563 -15.64637 -15.49081 -15.14784 -14.71760 -14.35209 -14.19730 -13.92811 -13.77679 -13.61147 -13.57585 -13.39752 -13.17979 -12.85383 -12.54623 -12.45025 -12.29684 -12.20548 -11.85856 -11.72419 -11.67654 -11.45337 -11.06969 -10.96365 -10.77808 -10.61927 -10.14859 -10.05996 -9.94963 -9.64607 -9.44534 -8.92697 -8.85531 -8.57043 -8.46297 -7.04110 -6.16218 -3.22758 1.23771 1.38929 2.76394 3.22171 3.47117 3.49821 3.68391 3.75147 4.30377 4.41317 4.56536 4.60886 4.77479 4.84007 4.90605 4.99439 5.03117 5.09498 5.23188 5.26540 5.37036 5.40052 5.41509 5.50074 5.51148 5.55158 5.56170 5.62717 5.68512 5.90625 5.92075 5.95057 5.99729 6.03289 6.34524 6.38518 6.52428 6.55832 6.56625 6.68929 6.81837 6.86130 6.95282 7.63661 7.69399 7.88565 8.36539 8.41056 8.93310 9.73238 10.25070 11.15784 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.002717 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.564081 B =10303.690238 C =10774.355191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.125 4.125 4 C -0.109 4.109 5 C -0.071 4.071 6 C -0.071 4.071 7 H 0.103 0.897 8 C -0.141 4.141 9 C 0.517 3.483 10 O -0.529 6.529 11 N -0.714 5.714 12 C 0.143 3.857 13 H 0.102 0.898 14 C 0.130 3.870 15 N -0.598 5.598 16 C -0.339 4.339 17 H 0.068 0.932 18 C -0.025 4.025 19 N -0.915 5.915 20 Si 1.066 2.934 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.293 1.293 24 C 0.120 3.880 25 C 0.077 3.923 26 H 0.066 0.934 27 O -0.563 6.563 28 C -0.078 4.078 29 C -0.122 4.122 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.397 0.603 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.269 0.731 42 H 0.057 0.943 43 H 0.039 0.961 44 H 0.378 0.622 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.734 13.396 13.791 23.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.127 4.127 5 C -0.071 4.071 6 C -0.092 4.092 7 H 0.121 0.879 8 C -0.198 4.198 9 C 0.302 3.698 10 O -0.404 6.404 11 N -0.365 5.365 12 C 0.038 3.962 13 H 0.120 0.880 14 C 0.003 3.997 15 N -0.326 5.326 16 C -0.466 4.466 17 H 0.086 0.914 18 C -0.227 4.227 19 N -0.555 5.555 20 Si 0.895 3.105 21 H -0.210 1.210 22 H -0.219 1.219 23 H -0.221 1.221 24 C -0.007 4.007 25 C 0.016 3.984 26 H 0.084 0.916 27 O -0.367 6.367 28 C -0.096 4.096 29 C -0.140 4.140 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.225 0.775 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.567 12.128 12.755 21.626 hybrid contribution -0.429 0.917 0.661 1.209 sum -12.996 13.045 13.416 22.782 Atomic orbital electron populations 1.20780 0.91427 1.02501 1.02275 1.19905 0.95921 0.93293 0.99838 1.20908 0.93972 0.97378 1.02090 1.20960 0.94263 0.97116 1.00334 1.19281 0.93245 0.93623 1.00949 1.20291 0.93142 1.01386 0.94379 0.87929 1.21801 1.01314 1.01037 0.95691 1.20426 0.82327 0.79784 0.87228 1.90736 1.55120 1.48047 1.46521 1.45914 1.06817 1.58449 1.25325 1.21958 0.94493 0.92147 0.87615 0.88010 1.21677 0.90504 0.90859 0.96663 1.44376 1.22969 1.06421 1.58862 1.19755 1.24076 0.89770 1.13032 0.91440 1.25817 1.01944 1.02870 0.92046 1.70793 1.36147 1.31098 1.17495 0.83511 0.76442 0.75093 0.75429 1.21017 1.21901 1.22062 1.22165 0.98189 0.85202 0.95154 1.23372 0.95769 0.86294 0.92947 0.91603 1.86460 1.35251 1.47001 1.68029 1.20922 0.93947 0.97698 0.97010 1.20994 0.94122 0.97476 1.01447 0.91249 0.91656 0.91740 0.86283 0.86224 0.91665 0.91591 0.91256 0.76830 0.94810 0.94986 0.91945 0.92446 0.94365 0.77481 0.86193 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.13 -1.30 9.70 -39.58 -0.38 -1.69 16 4 C -0.11 -1.19 9.67 -39.58 -0.38 -1.57 16 5 C -0.07 -0.86 4.40 -104.62 -0.46 -1.32 16 6 C -0.07 -0.78 2.90 -92.92 -0.27 -1.05 16 7 H 0.10 0.92 7.88 -51.93 -0.41 0.51 16 8 C -0.14 -1.27 8.90 37.15 0.33 -0.94 16 9 C 0.52 7.83 7.02 -10.99 -0.08 7.76 16 10 O -0.53 -10.27 14.73 5.55 0.08 -10.19 16 11 N -0.71 -10.47 5.01 -52.02 -0.26 -10.73 16 12 C 0.14 2.66 3.04 -66.09 -0.20 2.46 16 13 H 0.10 2.16 7.55 -51.93 -0.39 1.77 16 14 C 0.13 2.82 7.01 -3.06 -0.02 2.80 16 15 N -0.60 -15.16 3.29 -170.07 -0.56 -15.72 16 16 C -0.34 -9.55 10.02 -15.06 -0.15 -9.70 16 17 H 0.07 1.90 7.97 -52.48 -0.42 1.48 16 18 C -0.02 -0.71 5.09 -17.43 -0.09 -0.79 16 19 N -0.91 -27.49 12.93 55.49 0.72 -26.78 16 20 Si 1.07 25.05 30.00 -169.99 -5.10 19.95 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.12 2.71 5.03 -2.53 -0.01 2.70 16 25 C 0.08 1.36 4.06 -24.58 -0.10 1.26 16 26 H 0.07 1.05 8.01 -51.93 -0.42 0.64 16 27 O -0.56 -9.17 13.47 -35.23 -0.47 -9.64 16 28 C -0.08 -1.01 7.92 -39.58 -0.31 -1.32 16 29 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.05 7.95 -52.49 -0.42 0.63 16 35 H 0.06 0.65 7.40 -51.93 -0.38 0.27 16 36 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.40 4.61 7.98 -40.82 -0.33 4.29 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.67 8.03 -51.93 -0.42 0.25 16 41 H 0.27 8.16 6.06 -40.82 -0.25 7.92 16 42 H 0.06 1.37 7.95 -51.93 -0.41 0.96 16 43 H 0.04 0.96 6.81 -51.93 -0.35 0.60 16 44 H 0.38 4.56 9.11 45.56 0.42 4.98 16 45 H 0.12 1.61 7.52 -52.49 -0.39 1.21 16 46 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -34.96 375.61 -9.02 -43.98 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.31 Total: 8.78 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -2.77 Total: -5.32 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.10 Total: -53.23 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.39 Total: -19.83 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.10 Total: 19.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.96 -9.02 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078024835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.812 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds