Wall clock time and date at job start Tue Mar 31 2020 12:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 120.00118 * 2 1 4 4 C 1.38233 * 120.00172 * 179.97438 * 3 2 1 5 5 C 1.38235 * 119.99787 * 359.97214 * 4 3 2 6 6 C 1.50703 * 119.99948 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47173 * 0.02562 * 6 5 4 8 8 C 1.52994 * 109.46969 * 119.99743 * 6 5 4 9 9 C 1.50703 * 109.47289 * 240.00175 * 6 5 4 10 10 O 1.21283 * 119.99825 * 359.97438 * 9 6 5 11 11 N 1.34770 * 119.99899 * 180.02562 * 9 6 5 12 12 C 1.46498 * 119.99990 * 180.02562 * 11 9 6 13 13 H 1.09002 * 110.63913 * 31.85510 * 12 11 9 14 14 C 1.54335 * 111.00148 * 268.78050 * 12 11 9 15 15 N 1.47021 * 107.26526 * 219.60265 * 14 12 11 16 16 C 1.36934 * 125.64867 * 178.84756 * 15 14 12 17 17 H 1.08004 * 120.00035 * 342.88139 * 16 15 14 18 18 C 1.38812 * 120.00404 * 162.87654 * 16 15 14 19 19 N 1.31622 * 119.99728 * 331.97362 * 18 16 15 20 20 Si 1.86799 * 120.00267 * 151.97240 * 18 16 15 21 21 H 1.48506 * 109.46858 * 180.02562 * 20 18 16 22 22 H 1.48494 * 109.47388 * 60.00205 * 20 18 16 23 23 H 1.48501 * 109.46953 * 300.00008 * 20 18 16 24 24 C 1.47421 * 108.70506 * 358.58056 * 15 14 12 25 25 C 1.54910 * 104.83090 * 24.35923 * 24 15 14 26 26 H 1.09001 * 111.00589 * 81.10302 * 25 24 15 27 27 O 1.42902 * 111.00509 * 204.91819 * 25 24 15 28 28 C 1.38236 * 120.00414 * 0.28045 * 5 4 3 29 29 C 1.38234 * 119.99474 * 359.53122 * 28 5 4 30 30 H 1.09005 * 109.46828 * 90.00387 * 1 2 3 31 31 H 1.08997 * 109.47083 * 210.00379 * 1 2 3 32 32 H 1.09000 * 109.46963 * 330.00832 * 1 2 3 33 33 H 1.08000 * 119.99699 * 359.97438 * 3 2 1 34 34 H 1.07998 * 119.99899 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47183 * 60.00883 * 8 6 5 36 36 H 1.08999 * 109.47060 * 180.02562 * 8 6 5 37 37 H 1.08992 * 109.47625 * 300.00258 * 8 6 5 38 38 H 0.97003 * 120.00448 * 359.97438 * 11 9 6 39 39 H 1.09002 * 109.99582 * 100.12211 * 14 12 11 40 40 H 1.08999 * 109.77686 * 338.95392 * 14 12 11 41 41 H 0.97004 * 120.00411 * 353.95791 * 19 18 16 42 42 H 1.09000 * 110.37006 * 143.19570 * 24 15 14 43 43 H 1.09005 * 110.36937 * 265.52137 * 24 15 14 44 44 H 0.96703 * 114.00038 * 298.54291 * 27 25 24 45 45 H 1.07997 * 120.00343 * 179.72753 * 28 5 4 46 46 H 1.08001 * 120.00215 * 180.22920 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5806 1.1972 0.0005 5 6 4.2717 0.0000 0.0017 6 6 5.7787 0.0000 0.0028 7 1 6.1421 1.0276 0.0031 8 6 6.2877 -0.7206 1.2528 9 6 6.2821 -0.7110 -1.2269 10 8 5.4945 -1.1727 -2.0254 11 7 7.6072 -0.8347 -1.4388 12 6 8.0965 -1.5253 -2.6345 13 1 7.4087 -1.3842 -3.4682 14 6 8.3089 -3.0286 -2.3570 15 7 9.5422 -3.4302 -3.0493 16 6 10.0938 -4.6834 -3.0345 17 1 9.7938 -5.3966 -2.2810 18 6 11.0385 -5.0373 -3.9880 19 7 11.0231 -4.4655 -5.1735 20 14 12.3315 -6.3250 -3.5889 21 1 13.2151 -6.5207 -4.7663 22 1 11.6646 -7.6081 -3.2513 23 1 13.1430 -5.8695 -2.4317 24 6 10.0832 -2.2618 -3.7672 25 6 9.5202 -1.0344 -3.0082 26 1 10.1084 -0.8237 -2.1151 27 8 9.4596 0.1112 -3.8603 28 6 3.5806 -1.1972 -0.0036 29 6 2.1983 -1.1972 -0.0002 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 1.6582 2.1324 -0.0004 34 1 4.1205 2.1325 0.0001 35 1 5.9244 -1.7484 1.2530 36 1 7.3777 -0.7202 1.2539 37 1 5.9237 -0.2064 2.1422 38 1 8.2371 -0.4658 -0.8000 39 1 7.4648 -3.6014 -2.7412 40 1 8.4148 -3.1944 -1.2849 41 1 10.3015 -3.8627 -5.4119 42 1 11.1726 -2.2642 -3.7294 43 1 9.7388 -2.2591 -4.8014 44 1 10.3197 0.3956 -4.1988 45 1 4.1206 -2.1325 -0.0072 46 1 1.6582 -2.1324 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078024835.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:39 Heat of formation + Delta-G solvation = -69.757118 kcal Electronic energy + Delta-G solvation = -26656.922466 eV Core-core repulsion = 22931.551939 eV Total energy + Delta-G solvation = -3725.370527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.54554 -40.31016 -39.35965 -36.90496 -35.75227 -35.62374 -33.74323 -32.13424 -31.77764 -30.09320 -28.99221 -27.56195 -26.35527 -25.00938 -23.66643 -22.68382 -22.39523 -21.77634 -20.90956 -19.69278 -18.57634 -18.16560 -17.60720 -16.93626 -16.51446 -16.20740 -16.12019 -15.82371 -15.57648 -15.41131 -15.31832 -14.80191 -14.54918 -14.39717 -14.27416 -14.20396 -14.03483 -13.61078 -13.35446 -13.21891 -13.16492 -12.96502 -12.66627 -12.62447 -12.54717 -12.44539 -11.90743 -11.90355 -11.81179 -11.76553 -11.70997 -11.21600 -10.81852 -10.61575 -10.22062 -9.78428 -9.39981 -9.15207 -8.40200 -5.44445 0.38895 0.53371 1.56140 1.58003 1.64752 1.84582 2.00707 2.58593 2.86961 2.88782 3.13140 3.44361 3.51855 3.62146 3.79070 3.86729 3.94329 4.00065 4.07800 4.11521 4.19551 4.23061 4.29373 4.38736 4.54857 4.57975 4.69470 4.79340 4.81448 4.82049 4.83001 4.85666 4.92142 4.98310 5.00913 5.18880 5.22979 5.29311 5.35755 5.51361 5.57798 5.69859 5.71356 6.13732 6.21021 6.48429 6.71459 6.77761 7.19890 7.59608 8.13870 8.90377 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021877 B = 0.002717 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.564081 B =10303.690238 C =10774.355191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.113 4.113 5 C -0.088 4.088 6 C -0.059 4.059 7 H 0.135 0.865 8 C -0.138 4.138 9 C 0.514 3.486 10 O -0.577 6.577 11 N -0.700 5.700 12 C 0.157 3.843 13 H 0.072 0.928 14 C 0.131 3.869 15 N -0.617 5.617 16 C -0.352 4.352 17 H 0.063 0.937 18 C -0.075 4.075 19 N -0.941 5.941 20 Si 1.121 2.879 21 H -0.291 1.291 22 H -0.277 1.277 23 H -0.273 1.273 24 C 0.122 3.878 25 C 0.104 3.896 26 H 0.100 0.900 27 O -0.565 6.565 28 C -0.101 4.101 29 C -0.140 4.140 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.417 0.583 39 H 0.003 0.997 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.043 0.957 43 H 0.007 0.993 44 H 0.399 0.601 45 H 0.101 0.899 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.466 15.550 16.102 25.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.131 4.131 5 C -0.089 4.089 6 C -0.080 4.080 7 H 0.153 0.847 8 C -0.195 4.195 9 C 0.302 3.698 10 O -0.456 6.456 11 N -0.352 5.352 12 C 0.050 3.950 13 H 0.090 0.910 14 C 0.005 3.995 15 N -0.346 5.346 16 C -0.480 4.480 17 H 0.081 0.919 18 C -0.271 4.271 19 N -0.583 5.583 20 Si 0.944 3.056 21 H -0.216 1.216 22 H -0.203 1.203 23 H -0.199 1.199 24 C -0.004 4.004 25 C 0.044 3.956 26 H 0.118 0.882 27 O -0.373 6.373 28 C -0.119 4.119 29 C -0.158 4.158 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.255 0.745 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.250 0.750 45 H 0.119 0.881 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.293 14.328 15.113 24.182 hybrid contribution -0.630 0.253 -0.093 0.686 sum -12.923 14.581 15.020 24.601 Atomic orbital electron populations 1.20824 0.89441 1.03743 1.02796 1.20278 0.97523 0.92982 0.98895 1.21301 0.94144 0.98305 1.01086 1.21306 0.94798 0.97540 0.99482 1.19487 0.93965 0.93817 1.01593 1.20327 0.92512 1.02535 0.92621 0.84743 1.21821 1.02273 1.00036 0.95388 1.21279 0.81746 0.78945 0.87863 1.90722 1.56303 1.50041 1.48518 1.45701 1.07356 1.57787 1.24369 1.21441 0.94594 0.90499 0.88421 0.91026 1.21712 0.88170 0.92942 0.96671 1.44637 1.24352 1.06540 1.59031 1.20043 1.24281 0.91092 1.12624 0.91939 1.27321 1.03835 1.04572 0.91405 1.70920 1.36129 1.32434 1.18815 0.82802 0.74012 0.73326 0.75498 1.21649 1.20264 1.19896 1.22113 0.97272 0.86859 0.94165 1.23040 0.94639 0.84651 0.93318 0.88217 1.86430 1.37249 1.45610 1.67991 1.20960 0.94695 0.97640 0.98632 1.21203 0.93965 0.98606 1.02057 0.90957 0.91007 0.89983 0.83702 0.83687 0.93413 0.89955 0.89180 0.74466 0.97923 0.93582 0.93621 0.93911 0.97494 0.75023 0.88058 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.01 71.24 0.71 -0.82 16 2 C -0.10 -1.95 5.88 -19.86 -0.12 -2.06 16 3 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 4 C -0.11 -2.23 9.67 22.27 0.22 -2.01 16 5 C -0.09 -2.07 4.40 -19.86 -0.09 -2.16 16 6 C -0.06 -1.18 2.90 -12.29 -0.04 -1.22 16 7 H 0.13 1.86 7.88 -2.39 -0.02 1.85 16 8 C -0.14 -2.17 8.90 71.98 0.64 -1.53 16 9 C 0.51 15.23 7.02 87.66 0.62 15.84 16 10 O -0.58 -23.10 14.73 -3.04 -0.04 -23.14 16 11 N -0.70 -19.45 5.01 -436.90 -2.19 -21.64 16 12 C 0.16 5.84 3.04 46.18 0.14 5.98 16 13 H 0.07 3.14 7.55 -2.39 -0.02 3.13 16 14 C 0.13 5.87 7.01 86.73 0.61 6.48 16 15 N -0.62 -32.08 3.29 -691.97 -2.28 -34.35 16 16 C -0.35 -20.25 10.02 84.03 0.84 -19.40 16 17 H 0.06 3.57 7.97 -2.91 -0.02 3.55 16 18 C -0.08 -4.33 5.09 84.86 0.43 -3.90 16 19 N -0.94 -58.14 12.93 21.65 0.28 -57.86 16 20 Si 1.12 50.59 30.00 68.60 2.06 52.65 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 22 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 24 C 0.12 5.67 5.03 86.86 0.44 6.11 16 25 C 0.10 3.57 4.06 31.99 0.13 3.70 16 26 H 0.10 2.84 8.01 -2.39 -0.02 2.82 16 27 O -0.56 -17.36 13.47 -148.98 -2.01 -19.37 16 28 C -0.10 -2.70 7.92 22.27 0.18 -2.52 16 29 C -0.14 -3.34 9.70 22.27 0.22 -3.12 16 30 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 0.88 8.09 -2.39 -0.02 0.87 16 32 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.15 2.01 7.95 -2.91 -0.02 1.99 16 35 H 0.05 0.92 7.40 -2.38 -0.02 0.91 16 36 H 0.08 1.02 7.56 -2.39 -0.02 1.00 16 37 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.42 8.31 7.98 -92.71 -0.74 7.57 16 39 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 40 H 0.05 1.93 8.03 -2.39 -0.02 1.91 16 41 H 0.25 16.10 6.06 -92.71 -0.56 15.54 16 42 H 0.04 2.08 7.95 -2.39 -0.02 2.06 16 43 H 0.01 0.38 6.81 -2.38 -0.02 0.36 16 44 H 0.40 8.71 9.11 -74.06 -0.67 8.04 16 45 H 0.10 2.95 7.52 -2.91 -0.02 2.93 16 46 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -79.69 375.61 0.75 -78.94 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -0.21 Total: 27.62 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 5.14 Total: -2.85 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -4.19 Total: -113.85 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -2.05 Total: -42.51 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.06 Total: 52.65 kcal Total: -79.69 0.75 -78.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078024835.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.183 kcal (2) G-P(sol) polarization free energy of solvation -79.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds