Wall clock time and date at job start Tue Mar 31 2020 12:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.99536 * 2 1 4 4 C 1.38242 * 119.99644 * 179.97438 * 3 2 1 5 5 C 1.38237 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00234 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.46601 * 0.02562 * 6 5 4 8 8 C 1.52995 * 109.47177 * 240.00201 * 6 5 4 9 9 C 1.50698 * 109.46944 * 119.99825 * 6 5 4 10 10 O 1.21283 * 120.00472 * 0.02562 * 9 6 5 11 11 N 1.34777 * 119.99538 * 179.97438 * 9 6 5 12 12 C 1.46499 * 119.99665 * 179.72653 * 11 9 6 13 13 H 1.09003 * 110.88828 * 31.39407 * 12 11 9 14 14 C 1.54916 * 111.00526 * 267.47216 * 12 11 9 15 15 N 1.47421 * 104.83435 * 204.91702 * 14 12 11 16 16 C 1.36941 * 125.64911 * 204.17901 * 15 14 12 17 17 H 1.07993 * 119.99726 * 359.96584 * 16 15 14 18 18 C 1.38817 * 119.99857 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99832 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47106 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47107 * 120.00083 * 20 18 16 23 23 H 1.48498 * 109.46903 * 239.99941 * 20 18 16 24 24 C 1.47024 * 108.70119 * 24.12897 * 15 14 12 25 25 C 1.54320 * 107.27409 * 358.93990 * 24 15 14 26 26 H 1.09005 * 110.71850 * 96.16891 * 25 24 15 27 27 O 1.42901 * 110.72154 * 219.44311 * 25 24 15 28 28 C 1.38237 * 119.99748 * 0.27848 * 5 4 3 29 29 C 1.38228 * 120.00286 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.46995 * 90.00193 * 1 2 3 31 31 H 1.08999 * 109.47136 * 209.99836 * 1 2 3 32 32 H 1.08997 * 109.47202 * 330.00261 * 1 2 3 33 33 H 1.07995 * 120.00470 * 359.97438 * 3 2 1 34 34 H 1.07997 * 119.99703 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.46983 * 179.97438 * 8 6 5 36 36 H 1.08995 * 109.47139 * 300.00124 * 8 6 5 37 37 H 1.09003 * 109.47199 * 59.99947 * 8 6 5 38 38 H 0.97001 * 120.00485 * 0.02562 * 11 9 6 39 39 H 1.08996 * 110.36483 * 323.75950 * 14 12 11 40 40 H 1.09007 * 110.36437 * 86.07790 * 14 12 11 41 41 H 0.96996 * 119.99987 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.88273 * 239.52156 * 24 15 14 43 43 H 1.09002 * 109.88091 * 118.35858 * 24 15 14 44 44 H 0.96696 * 113.99921 * 293.52343 * 27 25 24 45 45 H 1.07995 * 119.99795 * 179.73077 * 28 5 4 46 46 H 1.08008 * 120.00307 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 0.0001 0.0016 6 6 5.7787 0.0001 0.0028 7 1 6.1420 1.0278 0.0031 8 6 6.2897 -0.7216 -1.2457 9 6 6.2801 -0.7097 1.2340 10 8 5.4914 -1.1707 2.0317 11 7 7.6050 -0.8332 1.4480 12 6 8.0924 -1.5179 2.6479 13 1 7.4014 -2.3031 2.9550 14 6 8.3386 -0.5120 3.8000 15 7 9.3459 -1.1608 4.6588 16 6 9.5418 -0.9078 5.9903 17 1 8.9288 -0.1771 6.4969 18 6 10.5283 -1.5904 6.6888 19 7 11.2750 -2.4812 6.0713 20 14 10.7959 -1.2447 8.5049 21 1 9.8341 -0.2081 8.9584 22 1 10.5836 -2.4918 9.2827 23 1 12.1830 -0.7590 8.7171 24 6 10.1046 -2.1255 3.8492 25 6 9.5177 -2.0882 2.4225 26 1 10.1012 -1.4262 1.7826 27 8 9.4540 -3.4035 1.8675 28 6 3.5806 -1.1971 -0.0037 29 6 2.1982 -1.1971 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6581 2.1325 -0.0004 34 1 4.1204 2.1325 0.0001 35 1 7.3797 -0.7212 -1.2451 36 1 5.9264 -1.7492 -1.2456 37 1 5.9270 -0.2082 -2.1362 38 1 8.2359 -0.4648 0.8098 39 1 8.7246 0.4284 3.4065 40 1 7.4178 -0.3413 4.3578 41 1 11.9646 -2.9579 6.5593 42 1 9.9977 -3.1262 4.2681 43 1 11.1569 -1.8422 3.8247 44 1 10.3189 -3.8051 1.7073 45 1 4.1206 -2.1323 -0.0072 46 1 1.6583 -2.1325 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078024836.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:43 Heat of formation + Delta-G solvation = -65.659192 kcal Electronic energy + Delta-G solvation = -26608.406906 eV Core-core repulsion = 22883.214079 eV Total energy + Delta-G solvation = -3725.192827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45251 -40.19099 -39.22728 -36.69183 -35.62600 -35.52774 -33.64626 -32.10634 -31.74751 -30.13609 -28.75855 -27.52487 -26.50327 -24.95260 -23.62977 -22.58305 -22.20773 -21.77374 -20.87300 -19.12284 -18.39115 -17.93514 -17.53557 -17.12739 -16.52478 -16.32162 -15.93681 -15.80941 -15.63561 -15.28680 -14.77444 -14.54029 -14.48460 -14.35874 -14.22120 -14.14958 -13.77427 -13.51378 -13.18653 -13.16202 -13.12740 -12.95335 -12.78816 -12.74285 -12.60629 -12.39568 -12.07215 -11.91169 -11.82453 -11.74738 -11.54559 -11.07596 -10.80111 -10.71174 -10.14276 -9.75308 -9.36659 -8.98861 -7.90922 -5.28186 0.42268 0.56253 1.44138 1.45708 1.55991 1.64424 2.08216 2.46242 2.90406 3.12093 3.30087 3.54504 3.57780 3.75932 3.86488 4.01898 4.05482 4.10105 4.15026 4.19294 4.24809 4.33064 4.44062 4.55314 4.57668 4.60971 4.79709 4.83171 4.84468 4.86915 4.93978 4.97826 5.03987 5.22093 5.26668 5.32091 5.35072 5.42400 5.46926 5.54467 5.64598 5.73118 5.73906 6.11693 6.16710 6.57302 6.86424 7.02915 7.28345 7.67212 8.29551 9.18991 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002794 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.402696 B =10018.356162 C =10857.836853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.098 4.098 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.087 4.087 6 C -0.060 4.060 7 H 0.133 0.867 8 C -0.136 4.136 9 C 0.514 3.486 10 O -0.578 6.578 11 N -0.699 5.699 12 C 0.154 3.846 13 H 0.067 0.933 14 C 0.131 3.869 15 N -0.623 5.623 16 C -0.247 4.247 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.948 5.948 20 Si 0.981 3.019 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.286 1.286 24 C 0.161 3.839 25 C 0.092 3.908 26 H 0.097 0.903 27 O -0.569 6.569 28 C -0.100 4.100 29 C -0.140 4.140 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.417 0.583 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.250 0.750 42 H 0.019 0.981 43 H 0.027 0.973 44 H 0.396 0.604 45 H 0.104 0.896 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 7.383 -20.394 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.098 4.098 3 C -0.149 4.149 4 C -0.133 4.133 5 C -0.088 4.088 6 C -0.081 4.081 7 H 0.151 0.849 8 C -0.193 4.193 9 C 0.301 3.699 10 O -0.457 6.457 11 N -0.351 5.351 12 C 0.047 3.953 13 H 0.085 0.915 14 C 0.004 3.996 15 N -0.350 5.350 16 C -0.376 4.376 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.809 3.191 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.212 1.212 24 C 0.035 3.965 25 C 0.031 3.969 26 H 0.115 0.885 27 O -0.377 6.377 28 C -0.118 4.118 29 C -0.157 4.157 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.101 0.899 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.255 0.745 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.045 0.955 44 H 0.246 0.754 45 H 0.122 0.878 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -14.050 7.095 -19.646 25.173 hybrid contribution 1.327 -0.397 1.268 1.878 sum -12.723 6.699 -18.378 23.334 Atomic orbital electron populations 1.20819 0.89491 1.03339 1.03137 1.20270 0.97501 0.93019 0.98997 1.21291 0.94168 0.98301 1.01185 1.21309 0.94795 0.97607 0.99591 1.19500 0.94060 0.93798 1.01431 1.20339 0.92451 1.02532 0.92822 0.84912 1.21803 1.02294 1.00003 0.95203 1.21245 0.81825 0.79022 0.87786 1.90725 1.56249 1.49876 1.48841 1.45667 1.07277 1.58243 1.23948 1.21689 0.94354 0.93877 0.85416 0.91470 1.21938 0.91735 0.94916 0.90963 1.44534 1.38438 1.45694 1.06379 1.19473 1.14594 1.18777 0.84723 0.90181 1.25664 0.98391 0.98750 1.02743 1.70133 1.24192 1.29239 1.36119 0.84978 0.77590 0.77251 0.79301 1.19230 1.21942 1.21248 1.21635 0.94088 0.92903 0.87873 1.23160 0.94857 0.84773 0.94075 0.88503 1.86438 1.36111 1.30507 1.84611 1.20968 0.94640 0.97649 0.98585 1.21204 0.93999 0.98553 1.01994 0.89952 0.91473 0.90598 0.83896 0.83852 0.89852 0.93275 0.89366 0.74525 0.93687 0.95222 0.94113 0.96324 0.95459 0.75395 0.87784 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.10 -1.98 5.88 -19.87 -0.12 -2.10 16 3 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 4 C -0.12 -2.31 9.67 22.27 0.22 -2.10 16 5 C -0.09 -2.05 4.39 -19.87 -0.09 -2.14 16 6 C -0.06 -1.20 2.90 -12.29 -0.04 -1.24 16 7 H 0.13 1.87 7.88 -2.39 -0.02 1.85 16 8 C -0.14 -2.02 8.90 71.98 0.64 -1.38 16 9 C 0.51 15.17 7.03 87.66 0.62 15.79 16 10 O -0.58 -23.24 14.77 -3.04 -0.04 -23.28 16 11 N -0.70 -19.26 5.09 -435.95 -2.22 -21.48 16 12 C 0.15 5.77 3.15 46.39 0.15 5.92 16 13 H 0.07 3.07 7.54 -2.39 -0.02 3.05 16 14 C 0.13 5.68 6.93 86.86 0.60 6.28 16 15 N -0.62 -32.76 3.39 -691.97 -2.35 -35.11 16 16 C -0.25 -14.20 10.28 84.03 0.86 -13.33 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 19 N -0.95 -56.63 10.31 21.65 0.22 -56.41 16 20 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 24 C 0.16 7.80 5.15 86.73 0.45 8.25 16 25 C 0.09 3.26 3.98 31.78 0.13 3.38 16 26 H 0.10 2.74 8.00 -2.38 -0.02 2.73 16 27 O -0.57 -18.90 13.39 -148.98 -1.99 -20.89 16 28 C -0.10 -2.62 7.94 22.27 0.18 -2.45 16 29 C -0.14 -3.27 9.70 22.27 0.22 -3.05 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.08 0.89 8.09 -2.39 -0.02 0.87 16 33 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.14 2.10 7.95 -2.91 -0.02 2.07 16 35 H 0.08 0.94 7.56 -2.39 -0.02 0.92 16 36 H 0.05 0.89 7.37 -2.39 -0.02 0.87 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.42 8.04 7.98 -92.71 -0.74 7.30 16 39 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.02 1.04 7.29 -2.38 -0.02 1.03 16 43 H 0.03 1.42 7.51 -2.39 -0.02 1.40 16 44 H 0.40 9.65 9.12 -74.06 -0.68 8.98 16 45 H 0.10 2.91 7.52 -2.91 -0.02 2.89 16 46 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -78.26 375.64 0.42 -77.84 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: -0.42 Total: 25.45 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.20 Total: 5.60 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -4.34 Total: -113.00 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -2.04 Total: -44.18 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -78.26 0.42 -77.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078024836.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.178 kcal (2) G-P(sol) polarization free energy of solvation -78.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds