Wall clock time and date at job start Tue Mar 31 2020 12:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99924 * 2 1 4 4 H 1.08996 * 110.78150 * 31.78920 * 3 2 1 5 5 C 1.54321 * 110.72335 * 268.54708 * 3 2 1 6 6 N 1.47023 * 107.27632 * 219.44124 * 5 3 2 7 7 C 1.36938 * 125.64949 * 178.89888 * 6 5 3 8 8 H 1.07998 * 119.99527 * 173.93733 * 7 6 5 9 9 C 1.38806 * 119.99810 * 353.95115 * 7 6 5 10 10 N 1.31618 * 120.00526 * 352.70947 * 9 7 6 11 11 Si 1.86811 * 119.99637 * 172.70997 * 9 7 6 12 12 H 1.48497 * 109.46886 * 94.98102 * 11 9 7 13 13 H 1.48502 * 109.47066 * 214.97999 * 11 9 7 14 14 H 1.48497 * 109.46992 * 334.97675 * 11 9 7 15 15 C 1.47428 * 108.69870 * 358.94529 * 6 5 3 16 16 C 1.54906 * 104.83548 * 24.12415 * 15 6 5 17 17 H 1.08992 * 111.00451 * 81.06433 * 16 15 6 18 18 N 1.46497 * 111.00472 * 204.91839 * 16 15 6 19 19 C 1.34775 * 120.00000 * 267.19712 * 18 16 15 20 20 O 1.21551 * 120.00023 * 0.02562 * 19 18 16 21 21 C 1.47851 * 120.00112 * 179.97438 * 19 18 16 22 22 C 1.39597 * 120.14343 * 353.85605 * 21 19 18 23 23 C 1.37926 * 119.85212 * 179.97438 * 22 21 19 24 24 C 1.38383 * 120.14943 * 359.97438 * 23 22 21 25 25 C 1.38337 * 120.29041 * 0.02562 * 24 23 22 26 26 C 1.50694 * 119.93124 * 180.02562 * 25 24 23 27 27 C 1.37984 * 120.14480 * 359.74155 * 25 24 23 28 28 C 1.50703 * 120.07737 * 180.25558 * 27 25 24 29 29 H 1.08998 * 109.46882 * 299.99632 * 1 2 3 30 30 H 1.08998 * 109.47088 * 59.99874 * 1 2 3 31 31 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.88198 * 338.86182 * 5 3 2 33 33 H 1.09005 * 109.87920 * 100.02385 * 5 3 2 34 34 H 0.96997 * 120.00022 * 180.02562 * 10 9 7 35 35 H 1.08996 * 110.36318 * 142.96951 * 15 6 5 36 36 H 1.08997 * 110.36138 * 265.17322 * 15 6 5 37 37 H 0.97003 * 120.00414 * 87.19395 * 18 16 15 38 38 H 1.08001 * 120.07230 * 359.97438 * 22 21 19 39 39 H 1.08003 * 119.92637 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.85824 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.47395 * 89.99584 * 26 25 24 42 42 H 1.09000 * 109.47530 * 210.00378 * 26 25 24 43 43 H 1.09008 * 109.47164 * 329.99667 * 26 25 24 44 44 H 1.09001 * 109.46838 * 263.69366 * 28 27 25 45 45 H 1.08996 * 109.46709 * 23.68980 * 28 27 25 46 46 H 1.08994 * 109.46619 * 143.69037 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0110 0.5368 5 6 2.2657 1.7894 -1.4429 6 7 3.5561 2.4941 -1.4450 7 6 4.1558 3.0578 -2.5394 8 1 5.0582 3.6392 -2.4210 9 6 3.6038 2.8821 -3.8008 10 7 2.5900 2.0592 -3.9668 11 14 4.2997 3.8137 -5.2629 12 1 5.2914 2.9612 -5.9664 13 1 3.1988 4.1649 -6.1956 14 1 4.9619 5.0554 -4.7889 15 6 4.0979 2.4922 -0.0739 16 6 3.4353 1.2719 0.6127 17 1 3.9515 0.3484 0.3508 18 7 3.3863 1.4497 2.0661 19 6 4.3815 0.9692 2.8376 20 8 5.3198 0.3889 2.3276 21 6 4.3324 1.1491 4.3043 22 6 3.3258 1.9249 4.8821 23 6 3.2854 2.0882 6.2511 24 6 4.2394 1.4847 7.0515 25 6 5.2395 0.7147 6.4853 26 6 6.2739 0.0607 7.3647 27 6 5.2886 0.5393 5.1176 28 6 6.3754 -0.3046 4.5029 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.3088 0.9350 -2.1184 33 1 1.4716 2.4692 -1.7519 34 1 2.2045 1.9363 -4.8483 35 1 5.1812 2.3742 -0.0943 36 1 3.8270 3.4133 0.4421 37 1 2.6377 1.9132 2.4731 38 1 2.5805 2.3961 4.2586 39 1 2.5070 2.6878 6.6994 40 1 4.2030 1.6154 8.1229 41 1 5.9275 -0.9303 7.6578 42 1 7.2119 -0.0295 6.8170 43 1 6.4305 0.6691 8.2556 44 1 7.1889 0.3387 4.1673 45 1 6.7516 -1.0091 5.2446 46 1 5.9716 -0.8536 3.6522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082352865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:21 Heat of formation + Delta-G solvation = -24.763785 kcal Electronic energy + Delta-G solvation = -26944.300615 eV Core-core repulsion = 23220.881146 eV Total energy + Delta-G solvation = -3723.419469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.47926 -38.96135 -37.87773 -35.89812 -34.42410 -33.33974 -32.28858 -31.61996 -28.91942 -27.96164 -26.89767 -26.58055 -26.13105 -24.42576 -23.25680 -21.12892 -20.62874 -20.40767 -19.85186 -17.69158 -16.88591 -16.52663 -15.90719 -15.83361 -15.36443 -15.02540 -14.86141 -14.52967 -14.33835 -14.13808 -13.96672 -13.45293 -13.24508 -13.17181 -12.87151 -12.70518 -12.60835 -12.30036 -12.01551 -11.95417 -11.87705 -11.76918 -11.50010 -11.24708 -11.04464 -10.98071 -10.80679 -10.73172 -10.13141 -10.00379 -9.79376 -9.48623 -9.15348 -9.01050 -8.77831 -8.70498 -8.54190 -6.87407 -5.71542 -3.09696 0.76573 1.16356 2.91654 3.27462 3.40752 3.45965 3.48112 3.74270 4.14315 4.50123 4.54436 4.61114 4.68332 4.83593 5.02665 5.06135 5.15083 5.35227 5.38505 5.42030 5.47150 5.48695 5.57857 5.61105 5.65069 5.70798 5.76061 5.82170 5.86220 5.87213 5.93784 6.06121 6.12405 6.16159 6.20565 6.27393 6.46224 6.57962 6.64235 6.76818 6.87564 7.20555 7.47224 7.68366 7.70816 7.89227 8.22296 8.40716 9.16664 9.77708 10.40943 11.37398 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.003087 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.389710 B = 9068.072573 C = 9804.960805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.377 6.377 3 C 0.057 3.943 4 H 0.060 0.940 5 C 0.156 3.844 6 N -0.598 5.598 7 C -0.230 4.230 8 H 0.080 0.920 9 C -0.007 4.007 10 N -0.919 5.919 11 Si 0.913 3.087 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.280 1.280 15 C 0.130 3.870 16 C 0.135 3.865 17 H 0.109 0.891 18 N -0.711 5.711 19 C 0.556 3.444 20 O -0.528 6.528 21 C -0.130 4.130 22 C -0.088 4.088 23 C -0.133 4.133 24 C -0.096 4.096 25 C -0.101 4.101 26 C -0.115 4.115 27 C -0.023 4.023 28 C -0.124 4.124 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.033 0.967 34 H 0.253 0.747 35 H 0.051 0.949 36 H 0.023 0.977 37 H 0.394 0.606 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 -2.331 22.669 22.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.295 6.295 3 C -0.002 4.002 4 H 0.078 0.922 5 C 0.031 3.969 6 N -0.326 5.326 7 C -0.358 4.358 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.566 5.566 11 Si 0.744 3.256 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.029 3.971 17 H 0.127 0.873 18 N -0.361 5.361 19 C 0.344 3.656 20 O -0.405 6.405 21 C -0.133 4.133 22 C -0.107 4.107 23 C -0.151 4.151 24 C -0.114 4.114 25 C -0.101 4.101 26 C -0.171 4.171 27 C -0.024 4.024 28 C -0.180 4.180 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.229 0.771 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.543 -2.912 22.034 22.233 hybrid contribution -0.550 1.095 -0.577 1.354 sum -1.092 -1.817 21.458 21.562 Atomic orbital electron populations 1.22696 0.81749 1.02060 0.99734 1.87916 1.19092 1.27458 1.95053 1.23782 0.92686 0.84151 0.99610 0.92174 1.21674 0.87949 0.97562 0.89724 1.44263 1.19591 1.66017 1.02707 1.19068 1.07545 1.24887 0.84262 0.90177 1.24838 0.98667 0.99471 0.97352 1.69935 1.26466 1.38275 1.21939 0.86080 0.77854 0.79305 0.82405 1.21514 1.21640 1.20585 1.21849 0.97532 0.93570 0.86780 1.22392 0.96107 1.01364 0.77190 0.87328 1.45876 1.24176 1.58475 1.07607 1.18213 0.82510 0.78743 0.86175 1.90736 1.33385 1.41613 1.74810 1.19873 0.98033 1.02216 0.93183 1.21289 0.96926 0.97062 0.95400 1.21023 0.99638 1.01001 0.93390 1.21185 0.94069 0.96324 0.99811 1.19770 0.97626 0.99387 0.93292 1.20823 0.97451 1.00318 0.98540 1.19925 0.95058 0.95152 0.92258 1.21140 0.96526 0.98931 1.01441 0.94898 0.93600 0.90230 0.90239 0.94846 0.93672 0.93098 0.95911 0.77090 0.85687 0.85558 0.85820 0.91111 0.90952 0.91560 0.90586 0.92323 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.88 101.05 1.10 1.60 16 2 O -0.38 -7.07 10.43 -35.23 -0.37 -7.43 16 3 C 0.06 1.08 3.05 -24.90 -0.08 1.01 16 4 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 5 C 0.16 3.81 5.23 -3.06 -0.02 3.79 16 6 N -0.60 -15.49 3.39 -170.07 -0.58 -16.07 16 7 C -0.23 -6.47 10.26 -15.06 -0.15 -6.62 16 8 H 0.08 2.19 7.84 -52.49 -0.41 1.77 16 9 C -0.01 -0.19 5.45 -17.43 -0.10 -0.29 16 10 N -0.92 -27.03 10.46 55.49 0.58 -26.45 16 11 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.13 2.81 6.93 -2.53 -0.02 2.80 16 16 C 0.13 2.58 3.15 -65.78 -0.21 2.37 16 17 H 0.11 2.38 7.54 -51.93 -0.39 1.99 16 18 N -0.71 -10.92 5.15 -52.67 -0.27 -11.19 16 19 C 0.56 8.95 7.70 -12.33 -0.09 8.85 16 20 O -0.53 -10.10 12.99 5.32 0.07 -10.03 16 21 C -0.13 -1.72 5.87 -104.96 -0.62 -2.34 16 22 C -0.09 -0.93 9.53 -39.19 -0.37 -1.30 16 23 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 24 C -0.10 -0.85 9.69 -39.49 -0.38 -1.23 16 25 C -0.10 -1.02 5.87 -104.68 -0.61 -1.63 16 26 C -0.11 -0.85 9.18 36.00 0.33 -0.52 16 27 C -0.02 -0.29 5.91 -104.22 -0.62 -0.90 16 28 C -0.12 -1.54 8.08 36.01 0.29 -1.25 16 29 H 0.03 0.40 8.11 -51.93 -0.42 -0.02 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.08 2.22 6.78 -51.93 -0.35 1.87 16 33 H 0.03 0.86 7.99 -51.93 -0.41 0.45 16 34 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.39 4.86 6.64 -40.82 -0.27 4.59 16 38 H 0.13 1.08 6.45 -52.49 -0.34 0.74 16 39 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 6.58 -51.93 -0.34 0.19 16 43 H 0.07 0.39 8.08 -51.92 -0.42 -0.03 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.57 6.35 -51.93 -0.33 0.25 16 46 H 0.10 1.45 5.86 -51.93 -0.30 1.14 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -32.98 369.37 -8.88 -41.87 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.92 Total: 3.81 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.94 Total: 2.75 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.27 Total: -53.71 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.30 Total: -17.47 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.98 -8.88 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082352865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.103 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds