Wall clock time and date at job start Tue Mar 31 2020 12:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99924 * 2 1 4 4 H 1.08996 * 110.78150 * 31.78920 * 3 2 1 5 5 C 1.54321 * 110.72335 * 268.54708 * 3 2 1 6 6 N 1.47023 * 107.27632 * 219.44124 * 5 3 2 7 7 C 1.36938 * 125.64949 * 178.89888 * 6 5 3 8 8 H 1.07998 * 119.99527 * 173.93733 * 7 6 5 9 9 C 1.38806 * 119.99810 * 353.95115 * 7 6 5 10 10 N 1.31618 * 120.00526 * 352.70947 * 9 7 6 11 11 Si 1.86811 * 119.99637 * 172.70997 * 9 7 6 12 12 H 1.48497 * 109.46886 * 94.98102 * 11 9 7 13 13 H 1.48502 * 109.47066 * 214.97999 * 11 9 7 14 14 H 1.48497 * 109.46992 * 334.97675 * 11 9 7 15 15 C 1.47428 * 108.69870 * 358.94529 * 6 5 3 16 16 C 1.54906 * 104.83548 * 24.12415 * 15 6 5 17 17 H 1.08992 * 111.00451 * 81.06433 * 16 15 6 18 18 N 1.46497 * 111.00472 * 204.91839 * 16 15 6 19 19 C 1.34775 * 120.00000 * 267.19712 * 18 16 15 20 20 O 1.21551 * 120.00023 * 0.02562 * 19 18 16 21 21 C 1.47851 * 120.00112 * 179.97438 * 19 18 16 22 22 C 1.39597 * 120.14343 * 353.85605 * 21 19 18 23 23 C 1.37926 * 119.85212 * 179.97438 * 22 21 19 24 24 C 1.38383 * 120.14943 * 359.97438 * 23 22 21 25 25 C 1.38337 * 120.29041 * 0.02562 * 24 23 22 26 26 C 1.50694 * 119.93124 * 180.02562 * 25 24 23 27 27 C 1.37984 * 120.14480 * 359.74155 * 25 24 23 28 28 C 1.50703 * 120.07737 * 180.25558 * 27 25 24 29 29 H 1.08998 * 109.46882 * 299.99632 * 1 2 3 30 30 H 1.08998 * 109.47088 * 59.99874 * 1 2 3 31 31 H 1.09005 * 109.46877 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.88198 * 338.86182 * 5 3 2 33 33 H 1.09005 * 109.87920 * 100.02385 * 5 3 2 34 34 H 0.96997 * 120.00022 * 180.02562 * 10 9 7 35 35 H 1.08996 * 110.36318 * 142.96951 * 15 6 5 36 36 H 1.08997 * 110.36138 * 265.17322 * 15 6 5 37 37 H 0.97003 * 120.00414 * 87.19395 * 18 16 15 38 38 H 1.08001 * 120.07230 * 359.97438 * 22 21 19 39 39 H 1.08003 * 119.92637 * 180.02562 * 23 22 21 40 40 H 1.07995 * 119.85824 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.47395 * 89.99584 * 26 25 24 42 42 H 1.09000 * 109.47530 * 210.00378 * 26 25 24 43 43 H 1.09008 * 109.47164 * 329.99667 * 26 25 24 44 44 H 1.09001 * 109.46838 * 263.69366 * 28 27 25 45 45 H 1.08996 * 109.46709 * 23.68980 * 28 27 25 46 46 H 1.08994 * 109.46619 * 143.69037 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3762 2.0110 0.5368 5 6 2.2657 1.7894 -1.4429 6 7 3.5561 2.4941 -1.4450 7 6 4.1558 3.0578 -2.5394 8 1 5.0582 3.6392 -2.4210 9 6 3.6038 2.8821 -3.8008 10 7 2.5900 2.0592 -3.9668 11 14 4.2997 3.8137 -5.2629 12 1 5.2914 2.9612 -5.9664 13 1 3.1988 4.1649 -6.1956 14 1 4.9619 5.0554 -4.7889 15 6 4.0979 2.4922 -0.0739 16 6 3.4353 1.2719 0.6127 17 1 3.9515 0.3484 0.3508 18 7 3.3863 1.4497 2.0661 19 6 4.3815 0.9692 2.8376 20 8 5.3198 0.3889 2.3276 21 6 4.3324 1.1491 4.3043 22 6 3.3258 1.9249 4.8821 23 6 3.2854 2.0882 6.2511 24 6 4.2394 1.4847 7.0515 25 6 5.2395 0.7147 6.4853 26 6 6.2739 0.0607 7.3647 27 6 5.2886 0.5393 5.1176 28 6 6.3754 -0.3046 4.5029 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.3088 0.9350 -2.1184 33 1 1.4716 2.4692 -1.7519 34 1 2.2045 1.9363 -4.8483 35 1 5.1812 2.3742 -0.0943 36 1 3.8270 3.4133 0.4421 37 1 2.6377 1.9132 2.4731 38 1 2.5805 2.3961 4.2586 39 1 2.5070 2.6878 6.6994 40 1 4.2030 1.6154 8.1229 41 1 5.9275 -0.9303 7.6578 42 1 7.2119 -0.0295 6.8170 43 1 6.4305 0.6691 8.2556 44 1 7.1889 0.3387 4.1673 45 1 6.7516 -1.0091 5.2446 46 1 5.9716 -0.8536 3.6522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082352865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:20 Heat of formation + Delta-G solvation = -46.494986 kcal Electronic energy + Delta-G solvation = -26945.242951 eV Core-core repulsion = 23220.881146 eV Total energy + Delta-G solvation = -3724.361805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.58265 -40.26138 -39.17089 -37.52134 -35.85202 -34.40782 -33.59500 -32.98420 -30.62913 -29.24531 -28.24157 -27.55535 -27.35077 -26.13657 -24.42787 -22.31978 -22.21004 -21.70506 -21.19184 -19.21850 -18.41143 -17.95092 -17.28950 -16.85138 -16.62283 -16.30261 -16.05995 -15.96149 -15.81362 -15.49293 -15.08584 -14.90688 -14.58890 -14.35946 -14.05772 -13.85956 -13.66760 -13.60799 -13.36108 -13.16485 -13.02319 -12.92050 -12.75526 -12.67171 -12.59541 -12.49103 -12.33093 -12.08429 -11.88846 -11.78620 -11.63726 -10.82469 -10.75645 -10.59382 -10.17100 -9.75183 -9.50580 -8.97304 -7.86980 -5.28767 -0.10624 0.40328 1.45038 1.47025 1.56594 1.85317 1.98334 2.45720 2.74539 2.84592 3.29872 3.49369 3.60035 3.82382 3.86460 3.90254 3.93203 4.06169 4.11499 4.29150 4.34491 4.38338 4.43775 4.57068 4.62744 4.67884 4.74551 4.78804 4.80413 4.85806 4.85926 4.90740 4.96508 4.99287 5.20984 5.24183 5.29768 5.38622 5.42818 5.48469 5.51902 5.63753 5.68116 6.01205 6.13217 6.30118 6.49718 7.02219 7.18765 7.67734 8.30660 9.20069 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.003087 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.389710 B = 9068.072573 C = 9804.960805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.097 0.903 5 C 0.165 3.835 6 N -0.619 5.619 7 C -0.249 4.249 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.982 3.018 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.131 3.869 16 C 0.153 3.847 17 H 0.074 0.926 18 N -0.697 5.697 19 C 0.552 3.448 20 O -0.568 6.568 21 C -0.154 4.154 22 C -0.090 4.090 23 C -0.128 4.128 24 C -0.089 4.089 25 C -0.105 4.105 26 C -0.115 4.115 27 C -0.047 4.047 28 C -0.118 4.118 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.035 0.965 33 H 0.012 0.988 34 H 0.249 0.751 35 H 0.033 0.967 36 H 0.045 0.955 37 H 0.413 0.587 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.157 0.843 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.337 -1.092 26.092 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C 0.019 3.981 4 H 0.115 0.885 5 C 0.039 3.961 6 N -0.347 5.347 7 C -0.378 4.378 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.595 5.595 11 Si 0.809 3.191 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.005 3.995 16 C 0.046 3.954 17 H 0.093 0.907 18 N -0.349 5.349 19 C 0.342 3.658 20 O -0.449 6.449 21 C -0.158 4.158 22 C -0.109 4.109 23 C -0.146 4.146 24 C -0.107 4.107 25 C -0.105 4.105 26 C -0.172 4.172 27 C -0.048 4.048 28 C -0.174 4.174 29 H 0.083 0.917 30 H 0.054 0.946 31 H 0.118 0.882 32 H 0.053 0.947 33 H 0.030 0.970 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.251 0.749 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.175 0.825 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.615 -1.660 25.511 25.616 hybrid contribution -0.226 0.674 -1.530 1.687 sum -1.841 -0.985 23.981 24.072 Atomic orbital electron populations 1.22979 0.79297 1.03898 1.00771 1.87899 1.21819 1.26997 1.94958 1.23456 0.93240 0.85208 0.96221 0.88542 1.21420 0.86857 0.95246 0.92543 1.44529 1.20400 1.65948 1.03815 1.19446 1.07815 1.25040 0.85452 0.89962 1.25711 0.99260 1.00508 1.00041 1.70166 1.27676 1.39517 1.22131 0.85026 0.77020 0.78322 0.78716 1.21484 1.21572 1.19157 1.21937 0.96649 0.95503 0.85440 1.21810 0.95576 0.98581 0.79449 0.90749 1.45597 1.24958 1.58724 1.05658 1.18816 0.81673 0.77659 0.87652 1.90726 1.34961 1.43347 1.75868 1.19738 1.00264 1.04783 0.90968 1.21536 0.96331 0.96341 0.96677 1.21442 1.00107 1.00434 0.92567 1.21642 0.92861 0.94605 1.01572 1.20078 0.98611 0.99464 0.92376 1.20885 0.96507 1.01024 0.98737 1.20064 0.95158 0.95934 0.93607 1.21004 0.96415 0.99037 1.00972 0.91652 0.94638 0.88157 0.94671 0.96996 0.94165 0.94827 0.93722 0.74907 0.83859 0.82281 0.82543 0.90142 0.91362 0.89506 0.91876 0.90034 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.88 113.37 1.23 1.95 16 2 O -0.40 -14.86 10.43 -148.98 -1.55 -16.41 16 3 C 0.08 2.97 3.05 31.78 0.10 3.07 16 4 H 0.10 2.99 7.75 -2.39 -0.02 2.97 16 5 C 0.17 8.36 5.23 86.73 0.45 8.81 16 6 N -0.62 -33.18 3.39 -691.99 -2.35 -35.53 16 7 C -0.25 -14.43 10.26 84.03 0.86 -13.57 16 8 H 0.08 4.59 7.84 -2.91 -0.02 4.57 16 9 C -0.06 -3.59 5.45 84.86 0.46 -3.12 16 10 N -0.95 -57.81 10.46 21.65 0.23 -57.58 16 11 Si 0.98 46.55 29.56 68.60 2.03 48.57 16 12 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.13 5.81 6.93 86.85 0.60 6.41 16 16 C 0.15 5.97 3.15 46.38 0.15 6.12 16 17 H 0.07 3.46 7.54 -2.39 -0.02 3.44 16 18 N -0.70 -21.07 5.15 -438.83 -2.26 -23.33 16 19 C 0.55 18.09 7.70 86.79 0.67 18.76 16 20 O -0.57 -23.10 12.99 -3.88 -0.05 -23.15 16 21 C -0.15 -3.97 5.87 -20.09 -0.12 -4.09 16 22 C -0.09 -1.65 9.53 22.52 0.21 -1.44 16 23 C -0.13 -1.74 10.03 22.23 0.22 -1.52 16 24 C -0.09 -1.20 9.69 22.33 0.22 -0.98 16 25 C -0.11 -1.85 5.87 -19.90 -0.12 -1.97 16 26 C -0.12 -1.39 9.18 71.23 0.65 -0.73 16 27 C -0.05 -1.13 5.91 -19.61 -0.12 -1.25 16 28 C -0.12 -3.04 8.08 71.24 0.58 -2.47 16 29 H 0.06 1.37 8.11 -2.39 -0.02 1.35 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.04 2.08 6.78 -2.38 -0.02 2.06 16 33 H 0.01 0.64 7.99 -2.38 -0.02 0.62 16 34 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 9.26 6.64 -92.71 -0.62 8.64 16 38 H 0.14 1.96 6.45 -2.91 -0.02 1.94 16 39 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 0.88 6.58 -2.39 -0.02 0.86 16 43 H 0.09 0.70 8.08 -2.38 -0.02 0.68 16 44 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 1.61 6.35 -2.39 -0.02 1.59 16 46 H 0.07 2.13 5.86 -2.39 -0.01 2.12 16 Total: -1.00 -76.81 369.37 2.47 -74.34 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.37 Total: 19.12 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.06 Total: 13.98 kcal Atomic # 7 Polarization: -112.06 SS G_CDS: -4.38 Total: -116.44 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.60 Total: -39.57 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Total: -76.81 2.47 -74.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082352865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.840 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds