Wall clock time and date at job start Tue Mar 31 2020 12:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38235 * 119.99762 * 2 1 4 4 C 1.38229 * 120.00000 * 180.02562 * 3 2 1 5 5 C 1.38237 * 119.99877 * 359.95367 * 4 3 2 6 6 C 1.50702 * 120.00115 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46993 * 359.97438 * 6 5 4 8 8 C 1.53001 * 109.47160 * 120.00129 * 6 5 4 9 9 C 1.50694 * 109.47025 * 240.00089 * 6 5 4 10 10 O 1.21283 * 120.00323 * 0.02562 * 9 6 5 11 11 N 1.34779 * 120.00083 * 179.97438 * 9 6 5 12 12 C 1.46496 * 120.00148 * 180.02562 * 11 9 6 13 13 H 1.09001 * 110.91957 * 31.09945 * 12 11 9 14 14 C 1.54904 * 111.00460 * 267.19580 * 12 11 9 15 15 N 1.47435 * 104.83391 * 204.91748 * 14 12 11 16 16 C 1.36938 * 125.64654 * 204.09153 * 15 14 12 17 17 H 1.07993 * 120.00285 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99489 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00197 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99567 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47036 * 90.00481 * 20 18 16 22 22 H 1.48504 * 109.47183 * 210.00191 * 20 18 16 23 23 H 1.48497 * 109.47369 * 330.00414 * 20 18 16 24 24 C 1.47022 * 108.70089 * 24.12919 * 15 14 12 25 25 C 1.54322 * 107.27269 * 358.93984 * 24 15 14 26 26 H 1.09002 * 110.71963 * 219.44477 * 25 24 15 27 27 O 1.42896 * 110.71801 * 96.34675 * 25 24 15 28 28 C 1.38232 * 120.00194 * 0.27977 * 5 4 3 29 29 C 1.38236 * 119.99887 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47557 * 89.99869 * 1 2 3 31 31 H 1.08998 * 109.46781 * 209.99908 * 1 2 3 32 32 H 1.09001 * 109.47033 * 329.99165 * 1 2 3 33 33 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 34 34 H 1.07994 * 120.00427 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.46948 * 180.02562 * 8 6 5 36 36 H 1.09004 * 109.46699 * 299.99859 * 8 6 5 37 37 H 1.08992 * 109.47057 * 59.99966 * 8 6 5 38 38 H 0.97002 * 120.00060 * 0.02562 * 11 9 6 39 39 H 1.08997 * 110.37110 * 86.08128 * 14 12 11 40 40 H 1.09002 * 110.46118 * 323.80172 * 14 12 11 41 41 H 0.96999 * 119.99714 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.87665 * 239.52284 * 24 15 14 43 43 H 1.08996 * 110.00949 * 118.43459 * 24 15 14 44 44 H 0.96702 * 113.99631 * 63.84596 * 27 25 24 45 45 H 1.08000 * 120.00270 * 179.72895 * 28 5 4 46 46 H 1.07994 * 119.99923 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2716 0.0001 -0.0001 6 6 5.7787 0.0001 -0.0001 7 1 6.1420 1.0277 -0.0009 8 6 6.2887 -0.7207 1.2494 9 6 6.2810 -0.7107 -1.2303 10 8 5.4929 -1.1715 -2.0287 11 7 7.6060 -0.8335 -1.4438 12 6 8.0944 -1.5240 -2.6400 13 1 7.4019 -1.3976 -3.4723 14 6 8.3466 -3.0248 -2.3507 15 7 9.3542 -3.4367 -3.3451 16 6 9.5553 -4.7142 -3.7953 17 1 8.9464 -5.5221 -3.4175 18 6 10.5420 -4.9707 -4.7374 19 7 11.2846 -3.9861 -5.1975 20 14 10.8159 -6.7132 -5.3522 21 1 9.9634 -6.9576 -6.5433 22 1 12.2436 -6.8894 -5.7208 23 1 10.4585 -7.6779 -4.2813 24 6 10.1078 -2.2488 -3.7724 25 6 9.5173 -1.0368 -3.0215 26 1 9.4645 -0.1664 -3.6754 27 8 10.2852 -0.7431 -1.8528 28 6 3.5806 -1.1971 -0.0050 29 6 2.1982 -1.1972 0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5140 33 1 1.6582 2.1325 -0.0004 34 1 4.1204 2.1325 -0.0010 35 1 7.3787 -0.7203 1.2496 36 1 5.9253 -0.2065 2.1392 37 1 5.9254 -1.7483 1.2497 38 1 8.2364 -0.4647 -0.8055 39 1 7.4279 -3.5962 -2.4826 40 1 8.7339 -3.1582 -1.3406 41 1 11.9743 -4.1655 -5.8555 42 1 9.9987 -2.1078 -4.8478 43 1 11.1616 -2.3645 -3.5189 44 1 11.1948 -0.4719 -2.0377 45 1 4.1206 -2.1324 -0.0091 46 1 1.6582 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083966070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:49 Heat of formation + Delta-G solvation = -63.910618 kcal Electronic energy + Delta-G solvation = -26713.674559 eV Core-core repulsion = 22988.557556 eV Total energy + Delta-G solvation = -3725.117003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.44231 -40.20618 -39.23845 -36.46091 -35.58578 -35.41885 -33.60919 -32.10132 -31.74340 -30.21270 -28.78724 -27.53045 -26.52494 -24.95391 -23.62687 -22.58425 -22.16251 -21.56501 -20.82950 -19.22392 -18.34546 -18.00497 -17.35823 -16.87972 -16.57934 -16.31860 -15.92588 -15.85981 -15.59854 -15.19619 -14.79280 -14.60570 -14.51770 -14.43871 -14.22838 -14.15719 -13.95958 -13.46697 -13.20165 -13.13796 -12.94403 -12.83847 -12.76073 -12.58654 -12.41573 -12.28164 -12.13435 -11.97649 -11.89728 -11.79383 -11.73748 -10.90680 -10.78728 -10.74562 -10.05346 -9.74905 -9.36415 -8.96730 -7.90632 -5.26518 0.42722 0.56842 1.43733 1.45786 1.54299 1.64318 2.12269 2.47434 2.90827 3.18150 3.28395 3.57517 3.62357 3.78167 3.86750 3.95130 4.04504 4.10997 4.15537 4.23406 4.26299 4.32040 4.50104 4.57934 4.61476 4.65693 4.80190 4.83383 4.84683 4.86071 4.94178 4.98961 5.05997 5.22074 5.25991 5.32554 5.34133 5.43888 5.50250 5.55139 5.63228 5.74072 5.74522 6.12694 6.17284 6.63731 6.87012 7.04812 7.30762 7.68870 8.32523 9.19299 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020182 B = 0.002810 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.043828 B = 9962.172675 C =10814.444246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.131 4.131 4 C -0.113 4.113 5 C -0.086 4.086 6 C -0.060 4.060 7 H 0.133 0.867 8 C -0.137 4.137 9 C 0.511 3.489 10 O -0.578 6.578 11 N -0.695 5.695 12 C 0.152 3.848 13 H 0.087 0.913 14 C 0.134 3.866 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.076 0.924 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.980 3.020 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.272 1.272 24 C 0.160 3.840 25 C 0.093 3.907 26 H 0.089 0.911 27 O -0.562 6.562 28 C -0.101 4.101 29 C -0.140 4.140 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.419 0.581 39 H 0.024 0.976 40 H 0.027 0.973 41 H 0.250 0.750 42 H 0.023 0.977 43 H 0.028 0.972 44 H 0.398 0.602 45 H 0.101 0.899 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 15.048 14.539 25.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.131 4.131 5 C -0.087 4.087 6 C -0.081 4.081 7 H 0.151 0.849 8 C -0.195 4.195 9 C 0.299 3.701 10 O -0.457 6.457 11 N -0.347 5.347 12 C 0.045 3.955 13 H 0.105 0.895 14 C 0.007 3.993 15 N -0.349 5.349 16 C -0.376 4.376 17 H 0.094 0.906 18 C -0.254 4.254 19 N -0.597 5.597 20 Si 0.808 3.192 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.197 1.197 24 C 0.034 3.966 25 C 0.033 3.967 26 H 0.107 0.893 27 O -0.371 6.371 28 C -0.119 4.119 29 C -0.158 4.158 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.257 0.743 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.041 0.959 43 H 0.046 0.954 44 H 0.249 0.751 45 H 0.119 0.881 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.682 14.460 14.145 24.995 hybrid contribution 1.312 -1.209 -0.938 2.015 sum -13.370 13.251 13.207 22.995 Atomic orbital electron populations 1.20820 0.89483 1.03698 1.02790 1.20269 0.97488 0.92995 0.98975 1.21291 0.94133 0.98280 1.01124 1.21299 0.94774 0.97527 0.99522 1.19480 0.93900 0.93826 1.01479 1.20310 0.92509 1.02495 0.92766 0.84906 1.21806 1.02061 1.00051 0.95570 1.21238 0.81881 0.79161 0.87856 1.90714 1.56213 1.50293 1.48517 1.45599 1.06967 1.57327 1.24787 1.21883 0.93382 0.91536 0.88725 0.89488 1.21863 0.91191 0.93836 0.92422 1.44565 1.38692 1.04374 1.47252 1.19403 1.14727 0.84631 1.18819 0.90638 1.25615 0.98293 1.01805 0.99688 1.70109 1.24344 1.31247 1.33958 0.85064 0.76748 0.79241 0.78181 1.21285 1.21469 1.19679 1.21723 0.94456 0.84528 0.95882 1.23106 0.90046 0.96444 0.87148 0.89335 1.86189 1.29038 1.90297 1.31589 1.20959 0.94673 0.97650 0.98594 1.21198 0.93949 0.98588 1.02062 0.90939 0.91049 0.90034 0.83732 0.83696 0.90390 0.89246 0.93410 0.74280 0.95749 0.95523 0.94088 0.95909 0.95392 0.75070 0.88061 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 10.01 71.24 0.71 -0.81 16 2 C -0.10 -1.95 5.88 -19.86 -0.12 -2.07 16 3 C -0.13 -2.41 9.70 22.27 0.22 -2.19 16 4 C -0.11 -2.22 9.67 22.27 0.22 -2.01 16 5 C -0.09 -2.04 4.40 -19.87 -0.09 -2.13 16 6 C -0.06 -1.25 2.90 -12.29 -0.04 -1.28 16 7 H 0.13 1.95 7.88 -2.39 -0.02 1.93 16 8 C -0.14 -2.37 8.90 71.98 0.64 -1.73 16 9 C 0.51 15.29 7.02 87.65 0.62 15.91 16 10 O -0.58 -22.76 14.73 -3.04 -0.04 -22.81 16 11 N -0.69 -20.18 5.06 -435.97 -2.21 -22.39 16 12 C 0.15 5.64 3.31 46.39 0.15 5.79 16 13 H 0.09 3.58 7.54 -2.39 -0.02 3.56 16 14 C 0.13 6.02 6.92 86.85 0.60 6.63 16 15 N -0.62 -33.07 3.40 -691.98 -2.35 -35.42 16 16 C -0.25 -14.35 10.28 84.03 0.86 -13.49 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 18 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 19 N -0.95 -56.27 10.31 21.65 0.22 -56.05 16 20 Si 0.98 46.42 29.55 68.60 2.03 48.44 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 24 C 0.16 7.64 5.14 86.73 0.45 8.09 16 25 C 0.09 3.24 4.19 31.78 0.13 3.37 16 26 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 27 O -0.56 -16.29 12.16 -148.98 -1.81 -18.10 16 28 C -0.10 -2.69 7.92 22.27 0.18 -2.52 16 29 C -0.14 -3.32 9.70 22.27 0.22 -3.11 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 33 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.15 2.00 7.95 -2.91 -0.02 1.98 16 35 H 0.08 1.18 7.57 -2.38 -0.02 1.16 16 36 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 37 H 0.05 0.98 7.40 -2.39 -0.02 0.97 16 38 H 0.42 10.06 7.01 -92.71 -0.65 9.41 16 39 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.02 1.22 7.38 -2.39 -0.02 1.20 16 43 H 0.03 1.46 7.43 -2.39 -0.02 1.44 16 44 H 0.40 8.68 9.12 -74.06 -0.68 8.01 16 45 H 0.10 2.97 7.52 -2.91 -0.02 2.94 16 46 H 0.13 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -75.10 373.90 0.72 -74.38 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.33 Total: 26.52 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.22 Total: 5.43 kcal Atomic # 7 Polarization: -109.53 SS G_CDS: -4.33 Total: -113.86 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -1.86 Total: -40.91 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -75.10 0.72 -74.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083966070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.465 kcal (2) G-P(sol) polarization free energy of solvation -75.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds