Wall clock time and date at job start Tue Mar 31 2020 12:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99470 * 2 1 4 4 H 1.48504 * 109.46734 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47197 * 299.99818 * 3 2 1 6 6 H 1.48498 * 109.47126 * 60.00289 * 3 2 1 7 7 C 1.38807 * 120.00041 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99653 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00130 * 180.02562 * 9 7 2 11 11 H 1.08998 * 112.84814 * 336.19344 * 10 9 7 12 12 C 1.53780 * 113.61635 * 107.50058 * 10 9 7 13 13 C 1.53778 * 87.08204 * 89.11316 * 12 10 9 14 14 H 1.08999 * 113.69365 * 270.87013 * 13 12 10 15 15 C 1.53005 * 113.61281 * 139.97900 * 13 12 10 16 16 N 1.46505 * 109.46904 * 87.50443 * 15 13 12 17 17 C 1.34773 * 120.00095 * 180.02562 * 16 15 13 18 18 O 1.21703 * 119.99823 * 359.97438 * 17 16 15 19 19 C 1.46651 * 119.99951 * 179.72488 * 17 16 15 20 20 O 1.35273 * 126.10410 * 359.96726 * 19 17 16 21 21 C 1.34291 * 109.46487 * 179.84980 * 20 19 17 22 22 C 1.34221 * 108.57026 * 0.36201 * 21 20 19 23 23 C 1.35566 * 126.09871 * 180.27507 * 19 17 16 24 24 C 1.50655 * 129.37174 * 0.16523 * 23 19 17 25 25 C 1.53449 * 108.11341 * 163.35120 * 24 23 19 26 26 C 1.53011 * 109.80418 * 50.45693 * 25 24 23 27 27 C 1.50730 * 129.23824 * 179.97438 * 22 21 20 28 28 C 1.53778 * 113.61520 * 204.99753 * 10 9 7 29 29 H 0.96998 * 120.00379 * 359.97438 * 1 2 3 30 30 H 0.96995 * 119.99729 * 359.97438 * 9 7 2 31 31 H 1.09008 * 113.61499 * 334.56309 * 12 10 9 32 32 H 1.09007 * 113.61385 * 203.66772 * 12 10 9 33 33 H 1.09003 * 109.46832 * 327.50696 * 15 13 12 34 34 H 1.08993 * 109.47355 * 207.50546 * 15 13 12 35 35 H 0.97000 * 119.99792 * 359.97438 * 16 15 13 36 36 H 1.07999 * 125.72029 * 180.02562 * 21 20 19 37 37 H 1.08998 * 109.73451 * 283.00809 * 24 23 19 38 38 H 1.09001 * 109.73265 * 43.69397 * 24 23 19 39 39 H 1.09004 * 109.41411 * 170.56016 * 25 24 23 40 40 H 1.09000 * 109.41282 * 290.35622 * 25 24 23 41 41 H 1.08998 * 109.41255 * 48.43017 * 26 25 24 42 42 H 1.09002 * 109.40561 * 168.20382 * 26 25 24 43 43 H 1.09003 * 109.73392 * 43.62265 * 27 22 21 44 44 H 1.08999 * 109.73074 * 282.93878 * 27 22 21 45 45 H 1.08997 * 113.61899 * 156.33389 * 28 10 9 46 46 H 1.09004 * 113.61300 * 25.42925 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 3.0660 -3.5635 -0.4062 12 6 1.9983 -4.4027 1.3418 13 6 0.7200 -5.0794 0.8194 14 1 -0.1917 -4.5256 1.0434 15 6 0.6190 -6.5622 1.1832 16 7 -0.0138 -6.7005 2.4973 17 6 -0.2079 -7.9248 3.0262 18 8 0.1420 -8.9155 2.4120 19 6 -0.8359 -8.0629 4.3443 20 8 -1.2651 -7.0510 5.1328 21 6 -1.7881 -7.5548 6.2624 22 6 -1.6944 -8.8930 6.2171 23 6 -1.0846 -9.2274 4.9925 24 6 -0.7954 -10.6417 4.5614 25 6 -0.8800 -11.5444 5.7994 26 6 -2.1915 -11.2829 6.5430 27 6 -2.1344 -9.9145 7.2344 28 6 1.2608 -4.8285 -0.5982 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3881 -0.0016 31 1 1.8278 -3.7488 2.1972 32 1 2.8271 -5.0940 1.4948 33 1 1.6178 -6.9977 1.2132 34 1 0.0192 -7.0799 0.4348 35 1 -0.2924 -5.9108 2.9870 36 1 -2.2084 -6.9795 7.0740 37 1 -1.5318 -10.9593 3.8233 38 1 0.2049 -10.6984 4.1322 39 1 -0.8412 -12.5888 5.4896 40 1 -0.0400 -11.3321 6.4607 41 1 -3.0190 -11.2958 5.8337 42 1 -2.3449 -12.0607 7.2911 43 1 -3.1217 -9.6531 7.6153 44 1 -1.4191 -9.9472 8.0562 45 1 1.8879 -5.6362 -0.9756 46 1 0.4949 -4.5184 -1.3091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086540955.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:09 Heat of formation + Delta-G solvation = -28.872071 kcal Electronic energy + Delta-G solvation = -25890.473636 eV Core-core repulsion = 22166.876018 eV Total energy + Delta-G solvation = -3723.597618 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.81629 -40.82123 -39.80841 -38.28697 -36.08483 -35.00416 -32.89562 -32.71009 -32.11103 -30.01916 -28.30870 -26.44994 -25.80186 -25.33360 -24.07314 -23.03498 -22.85449 -21.18131 -20.08846 -19.81824 -19.36290 -18.72155 -17.52244 -17.19293 -17.02637 -16.67437 -16.26121 -15.83270 -15.72431 -15.54743 -15.32183 -15.04648 -14.80936 -14.68714 -14.54413 -13.93730 -13.75766 -13.72542 -13.30547 -13.21611 -12.98184 -12.96469 -12.92930 -12.67402 -12.14286 -12.06447 -11.89925 -11.74849 -11.59701 -11.51755 -11.48256 -11.19397 -10.94855 -10.81393 -10.42023 -10.20830 -9.55531 -9.00976 -7.96279 -5.24662 0.00933 1.32892 1.47472 1.47742 1.57986 1.67787 2.04596 2.21108 2.54993 3.36334 3.47573 3.62935 3.71274 3.75878 3.81717 3.87952 4.00845 4.11809 4.17328 4.28402 4.30816 4.37814 4.39128 4.52079 4.62275 4.69404 4.71211 4.72571 4.91774 4.93646 4.97395 5.00092 5.03386 5.08555 5.14797 5.17595 5.23251 5.29442 5.32928 5.42559 5.43931 5.50459 5.52672 5.64680 5.85236 6.27538 6.38837 6.95089 7.32378 8.09521 8.31683 9.27222 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.002225 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.300988 B =12580.351416 C =13419.040901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.241 4.241 8 H 0.077 0.923 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.062 0.938 12 C -0.155 4.155 13 C -0.104 4.104 14 H 0.079 0.921 15 C 0.140 3.860 16 N -0.710 5.710 17 C 0.598 3.402 18 O -0.554 6.554 19 C -0.109 4.109 20 O -0.178 6.178 21 C 0.008 3.992 22 C -0.204 4.204 23 C -0.090 4.090 24 C -0.057 4.057 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.047 4.047 28 C -0.132 4.132 29 H 0.251 0.749 30 H 0.374 0.626 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.411 0.589 36 H 0.249 0.751 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.392 -23.652 15.643 28.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.373 4.373 8 H 0.095 0.905 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.080 0.920 12 C -0.195 4.195 13 C -0.123 4.123 14 H 0.098 0.902 15 C 0.017 3.983 16 N -0.359 5.359 17 C 0.385 3.615 18 O -0.435 6.435 19 C -0.160 4.160 20 O -0.075 6.075 21 C -0.060 4.060 22 C -0.205 4.205 23 C -0.093 4.093 24 C -0.094 4.094 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.084 4.084 28 C -0.171 4.171 29 H 0.060 0.940 30 H 0.206 0.794 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.265 0.735 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.108 0.892 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.127 0.873 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.931 -23.894 15.060 28.516 hybrid contribution -0.246 1.657 0.016 1.676 sum -4.177 -22.237 15.076 27.188 Atomic orbital electron populations 1.69819 1.06577 1.25996 1.59618 1.25567 0.96411 1.01108 1.03825 0.85073 0.78272 0.79834 0.76585 1.19013 1.22133 1.22111 1.19715 0.91553 0.85165 1.40833 0.90491 1.42319 1.05332 1.00606 1.87569 1.21382 0.95170 0.84911 0.95112 0.91997 1.23737 0.97291 0.99286 0.99210 1.22507 0.98358 0.93504 0.97947 0.90247 1.21436 0.98089 0.95914 0.82882 1.45960 1.60974 1.07818 1.21165 1.16736 0.78151 0.83785 0.82779 1.90821 1.53175 1.38328 1.61157 1.21395 1.12130 0.87199 0.95228 1.84248 1.61094 1.35261 1.26919 1.24703 0.98411 0.94193 0.88697 1.20709 1.06485 0.95354 0.97952 1.20766 0.98106 0.95798 0.94625 1.20248 1.01954 0.88594 0.98567 1.21616 0.98718 0.99358 0.95579 1.21596 0.97080 0.97024 0.99894 1.20207 1.02361 0.91204 0.94627 1.23344 0.99962 0.98688 0.95115 0.94034 0.79397 0.93575 0.88906 0.90682 0.91153 0.75326 0.73532 0.90677 0.91265 0.90053 0.91714 0.92317 0.89239 0.88755 0.89435 0.87323 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.06 13.06 21.65 0.28 -58.78 16 2 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 3 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 7 C -0.24 -13.29 9.97 84.03 0.84 -12.45 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 9 N -0.72 -35.85 5.31 -320.46 -1.70 -37.55 16 10 C 0.14 5.53 4.56 45.52 0.21 5.73 16 11 H 0.06 2.36 8.10 -2.39 -0.02 2.34 16 12 C -0.15 -5.03 7.43 31.12 0.23 -4.80 16 13 C -0.10 -3.06 3.63 -10.27 -0.04 -3.10 16 14 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 15 C 0.14 3.65 5.51 86.38 0.48 4.13 16 16 N -0.71 -18.88 5.55 -467.09 -2.59 -21.47 16 17 C 0.60 17.46 7.79 86.44 0.67 18.14 16 18 O -0.55 -18.60 15.45 -4.36 -0.07 -18.67 16 19 C -0.11 -2.84 7.12 23.85 0.17 -2.67 16 20 O -0.18 -4.09 10.43 -12.22 -0.13 -4.22 16 21 C 0.01 0.13 12.05 66.90 0.81 0.94 16 22 C -0.20 -3.49 5.92 -20.14 -0.12 -3.61 16 23 C -0.09 -2.07 5.94 -19.86 -0.12 -2.19 16 24 C -0.06 -1.17 5.40 29.98 0.16 -1.01 16 25 C -0.12 -1.59 5.86 30.75 0.18 -1.41 16 26 C -0.12 -1.27 5.85 30.74 0.18 -1.09 16 27 C -0.05 -0.49 6.30 30.00 0.19 -0.30 16 28 C -0.13 -4.03 7.39 31.12 0.23 -3.80 16 29 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.37 19.96 7.90 -92.71 -0.73 19.23 16 31 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.09 2.58 7.90 -2.38 -0.02 2.56 16 33 H 0.07 1.93 7.84 -2.39 -0.02 1.91 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.41 10.30 8.24 -92.71 -0.76 9.54 16 36 H 0.25 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.66 7.48 -2.39 -0.02 1.64 16 39 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 41 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.11 2.69 8.10 -2.39 -0.02 2.67 16 46 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -69.91 376.15 1.86 -68.06 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.50 Total: 36.04 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 4.53 Total: -11.44 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -4.01 Total: -117.80 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.19 Total: -22.88 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -69.91 1.86 -68.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086540955.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.186 kcal (2) G-P(sol) polarization free energy of solvation -69.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds