Wall clock time and date at job start Tue Mar 31 2020 12:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47059 * 240.00330 * 3 2 1 5 5 H 1.48491 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 120.00424 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21611 * 120.00020 * 359.97438 * 18 17 16 20 20 C 1.47378 * 119.99807 * 179.97438 * 18 17 16 21 21 C 1.47019 * 127.19476 * 0.02641 * 20 18 17 22 22 C 1.34176 * 105.95915 * 180.02562 * 21 20 18 23 23 O 1.34221 * 109.11903 * 359.97438 * 22 21 20 24 24 C 1.33653 * 110.91143 * 359.72399 * 23 22 21 25 25 C 1.50691 * 125.80314 * 180.28684 * 24 23 22 26 26 C 1.53000 * 117.49879 * 8.81417 * 25 24 23 27 27 C 1.53001 * 60.00102 * 252.50683 * 26 25 24 28 28 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 32 32 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 33 33 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 34 34 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 35 35 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 36 36 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 37 37 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 38 38 H 1.08006 * 127.01847 * 0.02562 * 21 20 18 39 39 H 1.07992 * 125.44482 * 180.02562 * 22 21 20 40 40 H 1.09006 * 115.55135 * 154.52025 * 25 24 23 41 41 H 1.08990 * 117.50233 * 0.02562 * 26 25 24 42 42 H 1.09005 * 117.49801 * 145.02316 * 26 25 24 43 43 H 1.09004 * 117.49950 * 252.51143 * 27 26 25 44 44 H 1.09000 * 117.49520 * 107.48586 * 27 26 25 45 45 H 1.09002 * 110.48438 * 261.59441 * 28 10 9 46 46 H 1.08998 * 110.48431 * 24.10269 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1883 -9.1950 -0.6348 20 6 0.2558 -10.3968 -2.0182 21 6 1.5077 -10.6036 -2.7607 22 6 1.3901 -11.8003 -3.3561 23 8 0.1969 -12.3305 -3.0454 24 6 -0.4938 -11.5141 -2.2437 25 6 -1.8686 -11.7804 -1.6872 26 6 -2.4563 -13.1777 -1.8948 27 6 -3.0071 -11.9906 -2.6875 28 6 1.1732 -4.7790 0.5806 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 3.4781 -4.1717 -1.5572 32 1 2.0192 -3.3251 -2.1443 33 1 0.7409 -5.2818 -2.1673 34 1 2.3436 -6.0721 -2.2965 35 1 0.2025 -7.3596 0.7748 36 1 -0.5158 -6.5794 -0.6547 37 1 1.6102 -8.2275 -1.5149 38 1 2.3501 -9.9299 -2.8158 39 1 2.1367 -12.2634 -3.9841 40 1 -2.1060 -11.2675 -0.7551 41 1 -1.8484 -13.9044 -2.4334 42 1 -3.0804 -13.5845 -1.0990 43 1 -3.9935 -11.6165 -2.4133 44 1 -2.7616 -11.9364 -3.7481 45 1 1.4161 -4.9519 1.6291 46 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086786800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:57 Heat of formation + Delta-G solvation = 1.417042 kcal Electronic energy + Delta-G solvation = -25725.951312 eV Core-core repulsion = 22003.667128 eV Total energy + Delta-G solvation = -3722.284183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.92469 -39.58217 -38.06044 -37.41372 -34.90654 -33.50191 -32.99673 -30.70183 -30.04914 -29.01107 -27.30869 -25.02681 -23.47439 -23.14130 -22.97199 -22.69169 -20.86757 -20.39258 -19.57297 -19.15186 -18.13855 -17.07363 -16.60893 -16.33156 -16.12538 -15.67929 -15.47728 -15.03165 -14.75802 -14.65127 -13.99612 -13.74839 -13.43186 -13.19079 -13.16431 -12.89253 -12.56417 -12.41436 -12.15571 -11.93922 -11.56931 -11.28859 -11.28140 -10.85081 -10.77846 -10.73847 -10.59855 -10.51998 -10.31083 -10.12744 -10.12179 -10.05709 -9.78880 -9.61009 -9.11590 -8.86955 -8.75253 -6.92464 -5.74520 -3.03001 1.04481 1.73264 2.40489 3.16368 3.18531 3.44729 3.49145 3.50272 3.54471 3.99113 4.34617 4.52004 4.56953 4.58400 4.60537 4.84723 4.91919 4.94211 5.08744 5.09708 5.25245 5.38070 5.42161 5.53766 5.56840 5.66609 5.70456 5.71949 5.73788 5.78117 5.90850 5.94503 6.02146 6.07910 6.10216 6.21310 6.34162 6.41369 6.48061 6.65232 6.69324 6.73773 6.91236 7.16644 7.45993 7.72104 8.16469 8.44718 9.55156 10.14782 10.48713 11.48087 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029000 B = 0.002073 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.272265 B =13503.342313 C =14020.947625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.723 5.723 10 C 0.175 3.825 11 H 0.048 0.952 12 C -0.146 4.146 13 C -0.114 4.114 14 C -0.105 4.105 15 H 0.078 0.922 16 C 0.129 3.871 17 N -0.718 5.718 18 C 0.587 3.413 19 O -0.542 6.542 20 C -0.236 4.236 21 C -0.187 4.187 22 C -0.038 4.038 23 O -0.176 6.176 24 C 0.107 3.893 25 C -0.089 4.089 26 C -0.171 4.171 27 C -0.159 4.159 28 C -0.118 4.118 29 H 0.255 0.745 30 H 0.384 0.616 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.400 0.600 38 H 0.158 0.842 39 H 0.209 0.791 40 H 0.153 0.847 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -28.479 -6.370 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.363 5.363 10 C 0.065 3.935 11 H 0.066 0.934 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.096 0.904 16 C 0.006 3.994 17 N -0.369 5.369 18 C 0.375 3.625 19 O -0.421 6.421 20 C -0.241 4.241 21 C -0.207 4.207 22 C -0.104 4.104 23 O -0.072 6.072 24 C 0.054 3.946 25 C -0.107 4.107 26 C -0.208 4.208 27 C -0.196 4.196 28 C -0.157 4.157 29 H 0.065 0.935 30 H 0.218 0.782 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.176 0.824 39 H 0.225 0.775 40 H 0.170 0.830 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.116 0.884 45 H 0.081 0.919 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.441 -28.526 -6.042 29.162 hybrid contribution 1.002 1.202 -0.368 1.608 sum 1.444 -27.324 -6.410 28.103 Atomic orbital electron populations 1.69647 1.05085 1.25733 1.57689 1.24746 0.95510 0.97673 1.03132 0.86282 0.78519 0.83671 0.77800 1.21330 1.21731 1.21314 1.19209 0.90951 0.84234 1.42631 0.91302 1.42535 1.05696 0.99747 1.88366 1.20814 0.94117 0.86006 0.92584 0.93390 1.22991 0.98665 0.95781 1.01217 1.22383 1.00619 0.97033 0.95164 1.22351 0.97320 0.95143 0.97617 0.90360 1.21468 0.98191 0.84765 0.95009 1.45814 1.20229 1.18944 1.51886 1.17165 0.83890 0.81511 0.79945 1.90758 1.22719 1.80329 1.48331 1.21128 0.96899 0.97779 1.08252 1.22890 0.98417 0.98401 1.00961 1.23856 0.86808 0.95549 1.04189 1.83719 1.26400 1.44163 1.52920 1.21697 0.93206 0.88151 0.91518 1.20841 0.85689 1.01943 1.02183 1.23074 1.03483 0.90718 1.03548 1.23064 0.97515 1.01566 0.97419 1.22605 1.01255 0.93496 0.98333 0.93481 0.78235 0.93403 0.90942 0.91801 0.93009 0.91443 0.91055 0.76624 0.82418 0.77471 0.82958 0.88148 0.87658 0.87396 0.88425 0.91866 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.60 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.63 9.96 -15.06 -0.15 -6.78 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.72 -18.03 5.04 -52.34 -0.26 -18.30 16 10 C 0.18 3.41 3.55 -66.81 -0.24 3.17 16 11 H 0.05 0.96 8.09 -51.93 -0.42 0.54 16 12 C -0.15 -2.52 6.59 -25.61 -0.17 -2.69 16 13 C -0.11 -1.56 5.97 -25.07 -0.15 -1.71 16 14 C -0.11 -1.34 2.96 -88.63 -0.26 -1.60 16 15 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 16 C 0.13 1.63 5.11 -4.04 -0.02 1.61 16 17 N -0.72 -8.18 5.40 -61.40 -0.33 -8.51 16 18 C 0.59 7.78 7.81 -12.54 -0.10 7.68 16 19 O -0.54 -8.75 14.92 5.27 0.08 -8.67 16 20 C -0.24 -2.67 6.31 -103.28 -0.65 -3.32 16 21 C -0.19 -1.54 10.60 -37.46 -0.40 -1.94 16 22 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 23 O -0.18 -1.64 10.23 7.63 0.08 -1.57 16 24 C 0.11 1.16 6.85 -34.97 -0.24 0.92 16 25 C -0.09 -0.87 5.62 -91.77 -0.52 -1.39 16 26 C -0.17 -1.23 10.17 -26.73 -0.27 -1.50 16 27 C -0.16 -1.26 10.23 -26.73 -0.27 -1.53 16 28 C -0.12 -1.88 5.97 -25.07 -0.15 -2.03 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.38 10.22 7.54 -40.82 -0.31 9.91 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.46 7.92 -51.93 -0.41 1.05 16 33 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.40 3.61 7.50 -40.82 -0.31 3.30 16 38 H 0.16 0.91 7.74 -52.48 -0.41 0.50 16 39 H 0.21 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.15 1.70 6.67 -51.93 -0.35 1.35 16 41 H 0.10 0.68 7.96 -51.93 -0.41 0.27 16 42 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.07 1.23 7.64 -51.93 -0.40 0.84 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -33.06 381.27 -9.52 -42.57 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.20 Total: 10.44 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.33 Total: -11.55 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.13 Total: -54.41 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.16 Total: -10.24 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.06 -9.52 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086786800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.990 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds