Wall clock time and date at job start Tue Mar 31 2020 12:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86807 * 120.00100 * 2 1 4 4 H 1.48500 * 109.47059 * 240.00330 * 3 2 1 5 5 H 1.48491 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46900 * 120.00424 * 3 2 1 7 7 C 1.38812 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00269 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00323 * 180.02562 * 9 7 2 11 11 H 1.09002 * 110.01721 * 34.93730 * 10 9 7 12 12 C 1.53872 * 110.03050 * 273.54733 * 10 9 7 13 13 C 1.54266 * 106.59640 * 240.66305 * 12 10 9 14 14 C 1.54887 * 104.19888 * 336.38805 * 13 12 10 15 15 H 1.09000 * 110.75698 * 279.63123 * 14 13 12 16 16 C 1.53001 * 110.75563 * 156.25362 * 14 13 12 17 17 N 1.46503 * 109.47012 * 66.46010 * 16 14 13 18 18 C 1.34775 * 119.99907 * 179.97438 * 17 16 14 19 19 O 1.21611 * 120.00020 * 359.97438 * 18 17 16 20 20 C 1.47378 * 119.99807 * 179.97438 * 18 17 16 21 21 C 1.47019 * 127.19476 * 0.02641 * 20 18 17 22 22 C 1.34176 * 105.95915 * 180.02562 * 21 20 18 23 23 O 1.34221 * 109.11903 * 359.97438 * 22 21 20 24 24 C 1.33653 * 110.91143 * 359.72399 * 23 22 21 25 25 C 1.50691 * 125.80314 * 180.28684 * 24 23 22 26 26 C 1.53000 * 117.49879 * 8.81417 * 25 24 23 27 27 C 1.53001 * 60.00102 * 252.50683 * 26 25 24 28 28 C 1.54266 * 110.07573 * 156.35353 * 10 9 7 29 29 H 0.96998 * 120.00138 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99707 * 359.97438 * 9 7 2 31 31 H 1.09003 * 110.03622 * 121.37821 * 12 10 9 32 32 H 1.09003 * 110.07498 * 359.96668 * 12 10 9 33 33 H 1.09001 * 110.48620 * 95.07012 * 13 12 10 34 34 H 1.09004 * 110.48798 * 217.70845 * 13 12 10 35 35 H 1.09007 * 109.46629 * 186.45584 * 16 14 13 36 36 H 1.08990 * 109.47676 * 306.45515 * 16 14 13 37 37 H 0.97000 * 119.99886 * 359.97438 * 17 16 14 38 38 H 1.08006 * 127.01847 * 0.02562 * 21 20 18 39 39 H 1.07992 * 125.44482 * 180.02562 * 22 21 20 40 40 H 1.09006 * 115.55135 * 154.52025 * 25 24 23 41 41 H 1.08990 * 117.50233 * 0.02562 * 26 25 24 42 42 H 1.09005 * 117.49801 * 145.02316 * 26 25 24 43 43 H 1.09004 * 117.49950 * 252.51143 * 27 26 25 44 44 H 1.09000 * 117.49520 * 107.48586 * 27 26 25 45 45 H 1.09002 * 110.48438 * 261.59441 * 28 10 9 46 46 H 1.08998 * 110.48431 * 24.10269 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9716 -3.5602 0.5860 12 6 2.3989 -4.0685 -1.4434 13 6 1.7095 -5.4266 -1.6887 14 6 1.5296 -6.0230 -0.2706 15 1 2.4573 -6.4768 0.0781 16 6 0.3860 -7.0392 -0.2508 17 7 0.7500 -8.1999 -1.0673 18 6 -0.1102 -9.2294 -1.1964 19 8 -1.1883 -9.1950 -0.6348 20 6 0.2558 -10.3968 -2.0182 21 6 1.5077 -10.6036 -2.7607 22 6 1.3901 -11.8003 -3.3561 23 8 0.1969 -12.3305 -3.0454 24 6 -0.4938 -11.5141 -2.2437 25 6 -1.8686 -11.7804 -1.6872 26 6 -2.4563 -13.1777 -1.8948 27 6 -3.0071 -11.9906 -2.6875 28 6 1.1732 -4.7790 0.5806 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3880 0.0002 31 1 3.4781 -4.1717 -1.5572 32 1 2.0192 -3.3251 -2.1443 33 1 0.7409 -5.2818 -2.1673 34 1 2.3436 -6.0721 -2.2965 35 1 0.2025 -7.3596 0.7748 36 1 -0.5158 -6.5794 -0.6547 37 1 1.6102 -8.2275 -1.5149 38 1 2.3501 -9.9299 -2.8158 39 1 2.1367 -12.2634 -3.9841 40 1 -2.1060 -11.2675 -0.7551 41 1 -1.8484 -13.9044 -2.4334 42 1 -3.0804 -13.5845 -1.0990 43 1 -3.9935 -11.6165 -2.4133 44 1 -2.7616 -11.9364 -3.7481 45 1 1.4161 -4.9519 1.6291 46 1 0.1181 -4.5284 0.4707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086786800.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:56 Heat of formation + Delta-G solvation = -19.219102 kcal Electronic energy + Delta-G solvation = -25726.846162 eV Core-core repulsion = 22003.667128 eV Total energy + Delta-G solvation = -3723.179034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.58981 -40.63111 -39.36634 -38.06151 -36.30583 -35.00344 -33.90062 -32.48675 -30.73376 -30.27349 -28.82085 -26.30910 -25.05510 -24.19270 -23.77466 -23.31762 -21.71067 -21.43262 -20.62978 -20.51106 -19.15307 -18.84662 -17.34897 -17.23035 -17.10641 -16.66463 -16.54022 -16.32177 -15.93004 -15.72995 -15.38446 -15.15606 -14.69291 -14.47566 -14.11742 -13.91937 -13.54662 -13.48763 -13.19147 -13.09102 -13.01621 -12.56784 -12.49096 -12.42424 -12.15981 -11.94400 -11.91843 -11.72062 -11.64181 -11.56814 -11.48792 -11.27979 -10.99239 -10.89899 -10.82388 -10.10529 -9.43189 -8.97265 -7.92895 -5.20881 0.25862 1.13521 1.46518 1.49655 1.55724 1.75047 2.24493 2.28552 2.57321 2.88273 3.38537 3.38924 3.64220 3.71111 3.74729 3.81150 3.85041 3.93989 3.99096 4.23373 4.24915 4.40204 4.51641 4.53600 4.59575 4.68463 4.68588 4.74856 4.78679 4.82489 4.84490 4.93109 5.02348 5.05663 5.08664 5.11635 5.15680 5.23617 5.36050 5.42383 5.46355 5.52049 5.54782 5.68188 6.02786 6.30212 6.56519 7.21809 7.34785 8.14492 8.35569 9.30651 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029000 B = 0.002073 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.272265 B =13503.342313 C =14020.947625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.163 3.837 11 H 0.046 0.954 12 C -0.139 4.139 13 C -0.105 4.105 14 C -0.084 4.084 15 H 0.107 0.893 16 C 0.137 3.863 17 N -0.705 5.705 18 C 0.582 3.418 19 O -0.582 6.582 20 C -0.263 4.263 21 C -0.195 4.195 22 C -0.028 4.028 23 O -0.180 6.180 24 C 0.096 3.904 25 C -0.115 4.115 26 C -0.151 4.151 27 C -0.157 4.157 28 C -0.114 4.114 29 H 0.250 0.750 30 H 0.370 0.630 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.049 0.951 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.414 0.586 38 H 0.184 0.816 39 H 0.251 0.749 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.622 -30.661 -7.428 31.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.377 5.377 10 C 0.055 3.945 11 H 0.064 0.936 12 C -0.179 4.179 13 C -0.143 4.143 14 C -0.103 4.103 15 H 0.125 0.875 16 C 0.013 3.987 17 N -0.357 5.357 18 C 0.371 3.629 19 O -0.464 6.464 20 C -0.267 4.267 21 C -0.214 4.214 22 C -0.093 4.093 23 O -0.076 6.076 24 C 0.043 3.957 25 C -0.133 4.133 26 C -0.188 4.188 27 C -0.194 4.194 28 C -0.153 4.153 29 H 0.058 0.942 30 H 0.202 0.798 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.251 0.749 38 H 0.201 0.799 39 H 0.267 0.733 40 H 0.149 0.851 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.092 0.908 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.945 -30.752 -7.118 31.702 hybrid contribution 0.287 1.793 -0.047 1.816 sum 3.232 -28.959 -7.165 30.007 Atomic orbital electron populations 1.69817 1.06646 1.25975 1.59877 1.25578 0.96378 1.01157 1.04186 0.85223 0.77161 0.79280 0.78189 1.20404 1.22409 1.20357 1.19616 0.91418 0.85372 1.40517 0.90633 1.42768 1.05292 1.01112 1.88541 1.21141 0.94136 0.84901 0.94319 0.93558 1.22794 1.00025 0.96773 0.98352 1.22322 1.00202 0.95609 0.96147 1.22196 0.98307 0.93594 0.96173 0.87468 1.21247 0.97386 0.85076 0.95000 1.45631 1.20611 1.17974 1.51434 1.17540 0.83452 0.82221 0.79688 1.90735 1.24413 1.81197 1.50025 1.21183 0.98938 0.97335 1.09287 1.23190 0.97965 0.99502 1.00735 1.24741 0.86204 0.95118 1.03259 1.83734 1.27247 1.44060 1.52575 1.21834 0.93600 0.88395 0.91851 1.20771 0.86337 1.04087 1.02135 1.23159 1.02604 0.89679 1.03345 1.23139 0.97120 1.01957 0.97212 1.22513 0.99454 0.93880 0.99462 0.94174 0.79796 0.91508 0.94402 0.93250 0.89348 0.91694 0.93127 0.74892 0.79883 0.73266 0.85118 0.87438 0.86197 0.86814 0.88252 0.90844 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 3 Si 0.97 46.69 29.55 68.60 2.03 48.71 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.24 -13.28 9.96 84.03 0.84 -12.45 16 8 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -37.58 5.04 -319.51 -1.61 -39.19 16 10 C 0.16 6.28 3.55 45.71 0.16 6.45 16 11 H 0.05 1.79 8.09 -2.39 -0.02 1.77 16 12 C -0.14 -4.63 6.59 31.32 0.21 -4.42 16 13 C -0.11 -2.64 5.97 31.67 0.19 -2.45 16 14 C -0.08 -1.94 2.96 -9.50 -0.03 -1.97 16 15 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 16 C 0.14 3.33 5.11 86.38 0.44 3.78 16 17 N -0.71 -14.99 5.40 -466.42 -2.52 -17.51 16 18 C 0.58 15.31 7.81 86.65 0.68 15.99 16 19 O -0.58 -19.49 14.92 -4.07 -0.06 -19.55 16 20 C -0.26 -5.71 6.31 -18.99 -0.12 -5.83 16 21 C -0.20 -2.65 10.60 23.65 0.25 -2.40 16 22 C -0.03 -0.31 12.03 66.89 0.80 0.50 16 23 O -0.18 -3.01 10.23 4.40 0.04 -2.97 16 24 C 0.10 2.02 6.85 25.26 0.17 2.20 16 25 C -0.12 -2.30 5.62 -11.54 -0.06 -2.36 16 26 C -0.15 -2.02 10.17 30.59 0.31 -1.71 16 27 C -0.16 -2.44 10.23 30.60 0.31 -2.12 16 28 C -0.11 -3.58 5.97 31.67 0.19 -3.39 16 29 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 30 H 0.37 20.52 7.54 -92.70 -0.70 19.82 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.52 7.92 -2.39 -0.02 1.50 16 33 H 0.05 1.41 8.01 -2.39 -0.02 1.39 16 34 H 0.09 1.63 8.14 -2.38 -0.02 1.62 16 35 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.05 1.46 8.10 -2.39 -0.02 1.45 16 37 H 0.41 6.21 7.50 -92.71 -0.70 5.52 16 38 H 0.18 1.36 7.74 -2.91 -0.02 1.34 16 39 H 0.25 0.26 8.06 -2.91 -0.02 0.23 16 40 H 0.13 3.15 6.67 -2.38 -0.02 3.13 16 41 H 0.11 1.28 7.96 -2.39 -0.02 1.26 16 42 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 1.88 7.64 -2.39 -0.02 1.87 16 Total: -1.00 -74.75 381.27 2.58 -72.17 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.40 Total: 33.23 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.81 Total: -14.47 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -3.85 Total: -117.12 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.02 Total: -22.52 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -74.75 2.58 -72.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086786800.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.953 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds