Wall clock time and date at job start Tue Mar 31 2020 12:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00085 * 2 1 4 4 H 1.48497 * 109.47227 * 270.00443 * 3 2 1 5 5 H 1.48498 * 109.47266 * 30.00600 * 3 2 1 6 6 H 1.48505 * 109.47046 * 150.00457 * 3 2 1 7 7 C 1.38814 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99715 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00193 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00123 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67221 * 36.77775 * 10 9 7 12 12 C 1.54894 * 110.75493 * 273.54584 * 10 9 7 13 13 C 1.54268 * 104.19175 * 203.74114 * 12 10 9 14 14 C 1.53878 * 106.60099 * 23.61017 * 13 12 10 15 15 H 1.08994 * 110.03294 * 240.66569 * 14 13 12 16 16 C 1.53004 * 110.03131 * 119.28000 * 14 13 12 17 17 N 1.46504 * 109.46744 * 67.09001 * 16 14 13 18 18 C 1.34782 * 119.99829 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99662 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99800 * 180.02562 * 18 17 16 21 21 H 1.08996 * 115.55426 * 34.33176 * 20 18 17 22 22 C 1.52999 * 117.51273 * 248.62897 * 20 18 17 23 23 C 1.52995 * 60.00177 * 252.52379 * 22 20 18 24 24 H 1.08995 * 117.52161 * 107.48656 * 23 22 20 25 25 C 1.50704 * 117.49921 * 252.51530 * 23 22 20 26 26 C 1.34515 * 125.79063 * 188.61793 * 25 23 22 27 27 C 1.41385 * 106.83992 * 180.02562 * 26 25 23 28 28 C 1.34512 * 106.83926 * 0.23220 * 27 26 25 29 29 O 1.34305 * 108.42433 * 359.63135 * 28 27 26 30 30 C 1.54266 * 106.63631 * 359.97376 * 14 13 12 31 31 H 0.96997 * 119.99840 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99702 * 359.97438 * 9 7 2 33 33 H 1.08997 * 110.48572 * 85.06545 * 12 10 9 34 34 H 1.08999 * 110.48106 * 322.42135 * 12 10 9 35 35 H 1.08995 * 110.03248 * 264.32412 * 13 12 10 36 36 H 1.09004 * 110.02808 * 142.89653 * 13 12 10 37 37 H 1.08998 * 109.47459 * 307.09537 * 16 14 13 38 38 H 1.08997 * 109.47239 * 187.09140 * 16 14 13 39 39 H 0.97003 * 120.00083 * 0.02562 * 17 16 14 40 40 H 1.09000 * 117.49752 * 145.02868 * 22 20 18 41 41 H 1.08999 * 117.50358 * 0.02562 * 22 20 18 42 42 H 1.08002 * 126.57938 * 359.97438 * 26 25 23 43 43 H 1.08002 * 126.57514 * 179.97438 * 27 26 25 44 44 H 1.07998 * 125.78467 * 179.77218 * 28 27 26 45 45 H 1.09003 * 110.48557 * 95.09384 * 30 14 13 46 46 H 1.09003 * 110.48284 * 217.73077 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5969 -3.2127 -0.6113 12 6 4.3095 -2.9908 1.4446 13 6 5.5441 -3.9110 1.3504 14 6 6.3434 -3.4495 0.1191 15 1 6.4169 -4.2616 -0.6042 16 6 7.7423 -2.9966 0.5420 17 7 8.5037 -4.1508 1.0261 18 6 9.7717 -3.9902 1.4541 19 8 10.2820 -2.8900 1.4390 20 6 10.5551 -5.1776 1.9515 21 1 10.3466 -6.1222 1.4493 22 6 10.8887 -5.2294 3.4438 23 6 11.9891 -4.9300 2.4239 24 1 12.3660 -3.9084 2.3748 25 6 13.0053 -6.0109 2.1591 26 6 14.1263 -5.8748 1.4282 27 6 14.7791 -7.1289 1.4422 28 6 14.0154 -7.9576 2.1765 29 8 12.9448 -7.2738 2.6123 30 6 5.5670 -2.2654 -0.4930 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 3.4361 -3.5563 1.7693 34 1 4.5028 -2.1615 2.1250 35 1 5.2290 -4.9467 1.2242 36 1 6.1528 -3.8123 2.2492 37 1 7.6595 -2.2564 1.3378 38 1 8.2552 -2.5554 -0.3126 39 1 8.0957 -5.0307 1.0378 40 1 10.8997 -6.2081 3.9234 41 1 10.5412 -4.4048 4.0662 42 1 14.4627 -4.9797 0.9263 43 1 15.7101 -7.3753 0.9532 44 1 14.2283 -8.9962 2.3826 45 1 5.9635 -1.3187 -0.1259 46 1 5.6114 -2.3021 -1.5816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086808913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:14 Heat of formation + Delta-G solvation = 6.022652 kcal Electronic energy + Delta-G solvation = -25310.083910 eV Core-core repulsion = 21587.999441 eV Total energy + Delta-G solvation = -3722.084469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.98119 -40.27183 -38.45470 -36.89173 -35.04009 -33.44797 -33.37494 -31.10736 -30.00742 -29.21876 -27.71347 -25.48474 -23.66400 -23.36742 -22.71905 -22.07117 -20.74807 -20.40145 -19.82709 -19.38236 -18.10914 -17.54747 -17.39267 -16.41006 -16.21904 -15.81558 -15.44692 -14.96473 -14.85219 -14.55754 -14.05087 -13.65551 -13.21454 -13.16988 -13.09484 -13.01595 -12.84833 -12.70404 -12.46171 -12.34948 -12.22400 -11.47250 -11.32773 -11.04733 -10.97027 -10.85647 -10.66608 -10.59259 -10.41965 -10.28683 -10.25894 -10.10389 -9.88199 -9.58484 -9.23497 -8.90266 -8.75707 -7.25599 -5.77251 -3.12594 1.23442 2.12181 2.31508 2.50254 2.93918 3.38161 3.41359 3.44699 3.46005 4.02550 4.21187 4.35413 4.54582 4.59234 4.64389 4.68458 4.73911 4.82533 4.87389 4.91547 5.19141 5.38492 5.40336 5.42141 5.47181 5.52469 5.58845 5.61136 5.62324 5.69739 5.70472 5.79088 5.92348 5.96382 6.07484 6.09368 6.20552 6.26268 6.29594 6.41211 6.60087 6.73660 6.78774 6.98976 7.28097 7.99055 7.99718 8.42401 9.21003 9.93783 10.13514 11.41092 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.001872 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.768087 B =14951.717408 C =15242.067426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.182 3.818 11 H 0.062 0.938 12 C -0.143 4.143 13 C -0.121 4.121 14 C -0.100 4.100 15 H 0.076 0.924 16 C 0.126 3.874 17 N -0.720 5.720 18 C 0.542 3.458 19 O -0.540 6.540 20 C -0.176 4.176 21 H 0.127 0.873 22 C -0.136 4.136 23 C -0.048 4.048 24 H 0.148 0.852 25 C 0.016 3.984 26 C -0.200 4.200 27 C -0.213 4.213 28 C -0.042 4.042 29 O -0.176 6.176 30 C -0.125 4.125 31 H 0.259 0.741 32 H 0.361 0.639 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.402 0.598 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.204 0.796 45 H 0.067 0.933 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.478 -17.238 4.629 33.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.387 5.387 10 C 0.072 3.928 11 H 0.080 0.920 12 C -0.183 4.183 13 C -0.159 4.159 14 C -0.120 4.120 15 H 0.094 0.906 16 C 0.003 3.997 17 N -0.371 5.371 18 C 0.327 3.673 19 O -0.418 6.418 20 C -0.197 4.197 21 H 0.145 0.855 22 C -0.174 4.174 23 C -0.067 4.067 24 H 0.166 0.834 25 C -0.034 4.034 26 C -0.219 4.219 27 C -0.232 4.232 28 C -0.109 4.109 29 O -0.072 6.072 30 C -0.164 4.164 31 H 0.069 0.931 32 H 0.194 0.806 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.237 0.763 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.167 0.833 43 H 0.167 0.833 44 H 0.220 0.780 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 28.322 -16.583 4.767 33.164 hybrid contribution 0.560 0.694 -0.175 0.909 sum 28.881 -15.889 4.593 33.282 Atomic orbital electron populations 1.69700 1.05111 1.25815 1.57565 1.24678 0.95238 0.97218 1.02043 0.86556 0.79238 0.84989 0.77793 1.21077 1.21768 1.20300 1.19083 0.80633 0.94690 1.42945 0.89222 1.42742 1.04018 1.01982 1.89953 1.21151 0.89493 0.88985 0.93194 0.92031 1.23029 0.95965 0.98499 1.00851 1.22220 0.97423 0.99532 0.96713 1.21957 0.92919 0.99057 0.98045 0.90574 1.21593 0.90930 0.87792 0.99413 1.45959 1.13378 1.12494 1.65260 1.19490 0.81678 0.88891 0.77196 1.90720 1.69588 1.26460 1.54996 1.22389 0.97489 0.99645 1.00177 0.85481 1.23104 0.99644 1.04753 0.89866 1.20483 0.85834 0.96207 1.04145 0.83417 1.21342 0.98056 0.83498 1.00485 1.21586 0.96201 0.99790 1.04293 1.21866 1.02705 0.93751 1.04853 1.24043 0.87269 0.98406 1.01227 1.83973 1.41767 1.21201 1.60277 1.22620 0.96558 0.97113 1.00115 0.93080 0.80587 0.92087 0.91925 0.92175 0.92268 0.91111 0.91451 0.76345 0.86992 0.87080 0.83258 0.83331 0.77984 0.91431 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 3 Si 0.88 22.16 27.73 -169.99 -4.71 17.45 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.24 -6.81 10.46 -15.06 -0.16 -6.97 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.37 5.06 -51.46 -0.26 -17.63 16 10 C 0.18 3.34 3.54 -65.90 -0.23 3.10 16 11 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 12 C -0.14 -2.35 6.51 -25.07 -0.16 -2.51 16 13 C -0.12 -1.45 6.15 -25.61 -0.16 -1.61 16 14 C -0.10 -1.14 2.97 -89.50 -0.27 -1.40 16 15 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 16 C 0.13 1.42 4.69 -4.04 -0.02 1.40 16 17 N -0.72 -6.82 5.32 -60.29 -0.32 -7.14 16 18 C 0.54 5.89 7.61 -10.98 -0.08 5.81 16 19 O -0.54 -7.96 16.26 5.55 0.09 -7.87 16 20 C -0.18 -1.42 5.89 -91.77 -0.54 -1.96 16 21 H 0.13 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.14 -0.97 9.87 -26.73 -0.26 -1.23 16 23 C -0.05 -0.40 5.75 -91.77 -0.53 -0.93 16 24 H 0.15 1.32 7.67 -51.93 -0.40 0.92 16 25 C 0.02 0.14 6.80 -35.62 -0.24 -0.10 16 26 C -0.20 -1.68 10.81 -39.70 -0.43 -2.11 16 27 C -0.21 -1.50 10.91 -39.70 -0.43 -1.94 16 28 C -0.04 -0.27 12.09 29.42 0.36 0.08 16 29 O -0.18 -1.49 10.36 5.70 0.06 -1.43 16 30 C -0.13 -1.81 5.97 -25.04 -0.15 -1.96 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.36 8.32 5.58 -40.82 -0.23 8.10 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 2.81 8.33 -40.82 -0.34 2.47 16 40 H 0.11 0.68 7.96 -51.93 -0.41 0.27 16 41 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.15 1.09 8.06 -52.49 -0.42 0.66 16 43 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.20 0.54 8.06 -52.49 -0.42 0.12 16 45 H 0.07 1.01 7.73 -51.93 -0.40 0.61 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -34.10 381.78 -9.29 -43.39 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.26 Total: 8.32 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -3.41 Total: -12.31 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.19 Total: -53.29 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.15 Total: -9.31 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.10 -9.29 -43.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086808913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.410 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds