Wall clock time and date at job start Tue Mar 31 2020 12:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00085 * 2 1 4 4 H 1.48497 * 109.47227 * 270.00443 * 3 2 1 5 5 H 1.48498 * 109.47266 * 30.00600 * 3 2 1 6 6 H 1.48505 * 109.47046 * 150.00457 * 3 2 1 7 7 C 1.38814 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99715 * 359.97438 * 7 2 1 9 9 N 1.36938 * 120.00193 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00123 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.67221 * 36.77775 * 10 9 7 12 12 C 1.54894 * 110.75493 * 273.54584 * 10 9 7 13 13 C 1.54268 * 104.19175 * 203.74114 * 12 10 9 14 14 C 1.53878 * 106.60099 * 23.61017 * 13 12 10 15 15 H 1.08994 * 110.03294 * 240.66569 * 14 13 12 16 16 C 1.53004 * 110.03131 * 119.28000 * 14 13 12 17 17 N 1.46504 * 109.46744 * 67.09001 * 16 14 13 18 18 C 1.34782 * 119.99829 * 179.97438 * 17 16 14 19 19 O 1.21285 * 119.99662 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.99800 * 180.02562 * 18 17 16 21 21 H 1.08996 * 115.55426 * 34.33176 * 20 18 17 22 22 C 1.52999 * 117.51273 * 248.62897 * 20 18 17 23 23 C 1.52995 * 60.00177 * 252.52379 * 22 20 18 24 24 H 1.08995 * 117.52161 * 107.48656 * 23 22 20 25 25 C 1.50704 * 117.49921 * 252.51530 * 23 22 20 26 26 C 1.34515 * 125.79063 * 188.61793 * 25 23 22 27 27 C 1.41385 * 106.83992 * 180.02562 * 26 25 23 28 28 C 1.34512 * 106.83926 * 0.23220 * 27 26 25 29 29 O 1.34305 * 108.42433 * 359.63135 * 28 27 26 30 30 C 1.54266 * 106.63631 * 359.97376 * 14 13 12 31 31 H 0.96997 * 119.99840 * 359.97438 * 1 2 3 32 32 H 0.97001 * 119.99702 * 359.97438 * 9 7 2 33 33 H 1.08997 * 110.48572 * 85.06545 * 12 10 9 34 34 H 1.08999 * 110.48106 * 322.42135 * 12 10 9 35 35 H 1.08995 * 110.03248 * 264.32412 * 13 12 10 36 36 H 1.09004 * 110.02808 * 142.89653 * 13 12 10 37 37 H 1.08998 * 109.47459 * 307.09537 * 16 14 13 38 38 H 1.08997 * 109.47239 * 187.09140 * 16 14 13 39 39 H 0.97003 * 120.00083 * 0.02562 * 17 16 14 40 40 H 1.09000 * 117.49752 * 145.02868 * 22 20 18 41 41 H 1.08999 * 117.50358 * 0.02562 * 22 20 18 42 42 H 1.08002 * 126.57938 * 359.97438 * 26 25 23 43 43 H 1.08002 * 126.57514 * 179.97438 * 27 26 25 44 44 H 1.07998 * 125.78467 * 179.77218 * 28 27 26 45 45 H 1.09003 * 110.48557 * 95.09384 * 30 14 13 46 46 H 1.09003 * 110.48284 * 217.73077 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5969 -3.2127 -0.6113 12 6 4.3095 -2.9908 1.4446 13 6 5.5441 -3.9110 1.3504 14 6 6.3434 -3.4495 0.1191 15 1 6.4169 -4.2616 -0.6042 16 6 7.7423 -2.9966 0.5420 17 7 8.5037 -4.1508 1.0261 18 6 9.7717 -3.9902 1.4541 19 8 10.2820 -2.8900 1.4390 20 6 10.5551 -5.1776 1.9515 21 1 10.3466 -6.1222 1.4493 22 6 10.8887 -5.2294 3.4438 23 6 11.9891 -4.9300 2.4239 24 1 12.3660 -3.9084 2.3748 25 6 13.0053 -6.0109 2.1591 26 6 14.1263 -5.8748 1.4282 27 6 14.7791 -7.1289 1.4422 28 6 14.0154 -7.9576 2.1765 29 8 12.9448 -7.2738 2.6123 30 6 5.5670 -2.2654 -0.4930 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3622 -0.0014 33 1 3.4361 -3.5563 1.7693 34 1 4.5028 -2.1615 2.1250 35 1 5.2290 -4.9467 1.2242 36 1 6.1528 -3.8123 2.2492 37 1 7.6595 -2.2564 1.3378 38 1 8.2552 -2.5554 -0.3126 39 1 8.0957 -5.0307 1.0378 40 1 10.8997 -6.2081 3.9234 41 1 10.5412 -4.4048 4.0662 42 1 14.4627 -4.9797 0.9263 43 1 15.7101 -7.3753 0.9532 44 1 14.2283 -8.9962 2.3826 45 1 5.9635 -1.3187 -0.1259 46 1 5.6114 -2.3021 -1.5816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086808913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:11 Heat of formation + Delta-G solvation = -15.888516 kcal Electronic energy + Delta-G solvation = -25311.034050 eV Core-core repulsion = 21587.999441 eV Total energy + Delta-G solvation = -3723.034609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.52120 -41.11467 -39.61320 -37.64951 -36.36286 -34.99352 -33.92286 -33.01955 -30.75274 -30.21316 -29.07826 -26.56049 -24.77086 -24.23909 -24.04483 -22.61918 -21.74320 -21.17311 -20.92448 -20.48456 -19.55309 -18.72231 -18.08439 -17.26159 -16.97316 -16.69770 -16.67749 -16.11727 -16.06631 -15.65564 -15.28623 -14.78753 -14.42808 -14.29048 -14.13715 -13.97503 -13.76965 -13.73495 -13.42743 -13.36938 -13.10248 -12.91859 -12.70310 -12.34390 -12.11769 -12.05447 -11.93806 -11.84599 -11.71170 -11.64071 -11.52262 -11.26284 -10.95979 -10.93960 -10.82854 -10.10480 -9.30140 -9.27571 -8.02320 -5.34657 0.68083 1.37544 1.40021 1.42898 1.47276 1.68115 1.94609 2.19794 2.48112 2.82259 3.28443 3.42499 3.53941 3.60665 3.66269 3.75071 3.81441 4.03312 4.11387 4.14781 4.17388 4.35841 4.38006 4.46312 4.61295 4.63319 4.65167 4.74209 4.78260 4.84289 4.87428 4.93380 5.02153 5.05438 5.06091 5.11554 5.20199 5.20980 5.35581 5.45452 5.54879 5.56606 5.58692 5.78840 6.19383 6.23077 6.53335 7.08975 7.20924 7.87286 8.04735 9.19299 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.036942 B = 0.001872 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.768087 B =14951.717408 C =15242.067426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.066 4.066 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.255 1.255 7 C -0.227 4.227 8 H 0.057 0.943 9 N -0.751 5.751 10 C 0.166 3.834 11 H 0.053 0.947 12 C -0.141 4.141 13 C -0.108 4.108 14 C -0.085 4.085 15 H 0.102 0.898 16 C 0.132 3.868 17 N -0.708 5.708 18 C 0.540 3.460 19 O -0.584 6.584 20 C -0.170 4.170 21 H 0.147 0.853 22 C -0.122 4.122 23 C -0.057 4.057 24 H 0.135 0.865 25 C 0.001 3.999 26 C -0.217 4.217 27 C -0.228 4.228 28 C -0.037 4.037 29 O -0.185 6.185 30 C -0.118 4.118 31 H 0.257 0.743 32 H 0.364 0.636 33 H 0.044 0.956 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.418 0.582 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.151 0.849 43 H 0.166 0.834 44 H 0.239 0.761 45 H 0.063 0.937 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.118 -19.032 4.789 36.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.359 4.359 8 H 0.075 0.925 9 N -0.393 5.393 10 C 0.058 3.942 11 H 0.071 0.929 12 C -0.181 4.181 13 C -0.146 4.146 14 C -0.104 4.104 15 H 0.121 0.879 16 C 0.009 3.991 17 N -0.359 5.359 18 C 0.327 3.673 19 O -0.465 6.465 20 C -0.191 4.191 21 H 0.165 0.835 22 C -0.160 4.160 23 C -0.075 4.075 24 H 0.152 0.848 25 C -0.049 4.049 26 C -0.236 4.236 27 C -0.247 4.247 28 C -0.104 4.104 29 O -0.082 6.082 30 C -0.157 4.157 31 H 0.066 0.934 32 H 0.197 0.803 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.256 0.744 45 H 0.082 0.918 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 31.004 -18.446 4.930 36.412 hybrid contribution -0.248 1.131 -0.230 1.181 sum 30.756 -17.314 4.700 35.606 Atomic orbital electron populations 1.69880 1.07072 1.26546 1.60030 1.25486 0.96099 1.01150 1.02980 0.85429 0.78546 0.79842 0.78073 1.20404 1.22429 1.17934 1.19058 0.82762 0.93357 1.40682 0.92472 1.42783 1.02428 1.04050 1.90041 1.21470 0.91289 0.86844 0.94603 0.92906 1.22892 0.97713 0.98741 0.98758 1.22143 0.95293 0.99580 0.97582 1.21829 0.92159 0.98351 0.98028 0.87933 1.21387 0.90918 0.88090 0.98751 1.45813 1.12896 1.12773 1.64402 1.19936 0.81879 0.89011 0.76464 1.90705 1.70559 1.28368 1.56855 1.22347 0.96776 0.99020 1.00975 0.83521 1.23163 0.98130 1.05424 0.89245 1.20387 0.86122 0.95721 1.05295 0.84759 1.21364 0.98403 0.83885 1.01209 1.21854 0.96623 1.00659 1.04455 1.22168 1.03666 0.93328 1.05562 1.24805 0.86118 0.99595 0.99871 1.83964 1.42600 1.21080 1.60531 1.22533 0.93865 0.98426 1.00873 0.93447 0.80282 0.93666 0.93530 0.89859 0.91108 0.92739 0.91900 0.74506 0.85497 0.87213 0.83139 0.81595 0.74442 0.91823 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.95 46.14 27.73 68.60 1.90 48.05 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 5 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 6 H -0.25 -11.23 6.52 99.48 0.65 -10.58 16 7 C -0.23 -12.99 10.46 84.03 0.88 -12.11 16 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 9 N -0.75 -34.80 5.06 -316.73 -1.60 -36.40 16 10 C 0.17 5.96 3.54 46.31 0.16 6.13 16 11 H 0.05 1.99 8.12 -2.39 -0.02 1.97 16 12 C -0.14 -4.50 6.51 31.67 0.21 -4.29 16 13 C -0.11 -2.27 6.15 31.32 0.19 -2.07 16 14 C -0.08 -1.65 2.97 -10.07 -0.03 -1.68 16 15 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.13 2.66 4.69 86.38 0.41 3.06 16 17 N -0.71 -11.42 5.32 -463.04 -2.46 -13.88 16 18 C 0.54 10.83 7.61 87.66 0.67 11.50 16 19 O -0.58 -16.94 16.26 -3.05 -0.05 -16.99 16 20 C -0.17 -2.40 5.89 -11.54 -0.07 -2.47 16 21 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 22 C -0.12 -1.51 9.87 30.59 0.30 -1.21 16 23 C -0.06 -0.90 5.75 -11.54 -0.07 -0.97 16 24 H 0.13 2.47 7.67 -2.39 -0.02 2.45 16 25 C 0.00 0.02 6.80 24.83 0.17 0.19 16 26 C -0.22 -3.49 10.81 22.19 0.24 -3.25 16 27 C -0.23 -2.84 10.91 22.19 0.24 -2.59 16 28 C -0.04 -0.39 12.09 66.97 0.81 0.42 16 29 O -0.18 -2.76 10.36 -2.52 -0.03 -2.79 16 30 C -0.12 -3.17 5.97 31.69 0.19 -2.98 16 31 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 32 H 0.36 16.34 5.58 -92.71 -0.52 15.83 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.38 7.60 -2.38 -0.02 1.36 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.42 4.20 8.33 -92.71 -0.77 3.42 16 40 H 0.13 1.21 7.96 -2.39 -0.02 1.19 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.24 0.41 8.06 -2.91 -0.02 0.39 16 45 H 0.06 1.78 7.73 -2.39 -0.02 1.76 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -76.49 381.78 2.47 -74.02 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: -0.36 Total: 27.07 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 4.77 Total: -15.77 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -3.76 Total: -113.58 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.08 Total: -19.78 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.90 Total: 48.05 kcal Total: -76.49 2.47 -74.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086808913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.129 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds