Wall clock time and date at job start Tue Mar 31 2020 12:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99570 * 2 1 4 4 H 1.48501 * 109.46861 * 269.99994 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00240 * 3 2 1 6 6 H 1.48496 * 109.46781 * 150.00289 * 3 2 1 7 7 C 1.38808 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00375 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99838 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00018 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.52433 * 34.87114 * 10 9 7 12 12 C 1.53805 * 109.52288 * 154.99830 * 10 9 7 13 13 C 1.52444 * 109.40344 * 197.73802 * 12 10 9 14 14 C 1.53953 * 110.73391 * 246.27352 * 13 12 10 15 15 C 1.52886 * 109.72950 * 44.36729 * 14 13 12 16 16 C 1.53440 * 109.38649 * 72.89392 * 15 14 13 17 17 N 1.45335 * 108.41858 * 282.28315 * 16 15 14 18 18 C 1.34768 * 120.37042 * 136.65906 * 17 16 15 19 19 O 1.21783 * 119.99872 * 4.28459 * 18 17 16 20 20 C 1.41554 * 120.00206 * 184.28552 * 18 17 16 21 21 C 1.35631 * 120.00028 * 174.76362 * 20 18 17 22 22 C 1.41607 * 119.99680 * 180.02562 * 21 20 18 23 23 C 1.37952 * 126.10198 * 179.97438 * 22 21 20 24 24 C 1.40308 * 106.53117 * 179.97438 * 23 22 21 25 25 C 1.35155 * 107.20493 * 0.02562 * 24 23 22 26 26 O 1.34016 * 109.03476 * 359.97438 * 25 24 23 27 27 C 1.46962 * 119.26257 * 316.92671 * 17 16 15 28 28 H 0.96999 * 119.99842 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99902 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47996 * 77.76151 * 12 10 9 31 31 H 1.08995 * 109.48268 * 317.72254 * 12 10 9 32 32 H 1.09002 * 109.22645 * 125.94892 * 13 12 10 33 33 H 1.09006 * 109.18898 * 6.57649 * 13 12 10 34 34 H 1.08996 * 109.42570 * 284.28717 * 14 13 12 35 35 H 1.08997 * 109.43044 * 164.44385 * 14 13 12 36 36 H 1.08999 * 109.48107 * 312.92069 * 15 14 13 37 37 H 1.09001 * 109.49788 * 192.87937 * 15 14 13 38 38 H 1.08999 * 109.67553 * 162.54329 * 16 15 14 39 39 H 1.09005 * 109.70782 * 42.03133 * 16 15 14 40 40 H 1.07999 * 119.99945 * 354.76563 * 20 18 17 41 41 H 1.08002 * 119.99521 * 0.02562 * 21 20 18 42 42 H 1.08004 * 126.72965 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.39737 * 180.02562 * 24 23 22 44 44 H 1.07995 * 125.48299 * 180.26242 * 25 24 23 45 45 H 1.08999 * 109.53819 * 231.25022 * 27 17 16 46 46 H 1.08998 * 109.53646 * 351.48311 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5643 -3.2078 -0.5880 12 6 5.5067 -2.2591 -0.6143 13 6 6.0917 -3.6072 -1.0196 14 6 7.3234 -3.9472 -0.1608 15 6 7.0318 -3.6336 1.3069 16 6 6.0639 -4.6829 1.8693 17 7 4.7233 -4.3664 1.4058 18 6 3.9087 -5.3425 0.9589 19 8 4.2648 -6.5058 1.0144 20 6 2.6391 -5.0157 0.4249 21 6 1.8634 -5.9847 -0.1218 22 6 0.5936 -5.6576 -0.6564 23 6 -0.2941 -6.5379 -1.2395 24 6 -1.4129 -5.7822 -1.6216 25 6 -1.1703 -4.5010 -1.2661 26 8 0.0358 -4.4292 -0.6863 27 6 4.2681 -2.9692 1.4244 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3619 -0.0014 30 1 6.1587 -1.7858 0.1199 31 1 5.4241 -1.6196 -1.4931 32 1 6.3848 -3.5705 -2.0688 33 1 5.3357 -4.3808 -0.8851 34 1 8.1741 -3.3541 -0.4962 35 1 7.5572 -5.0066 -0.2655 36 1 6.5808 -2.6443 1.3845 37 1 7.9617 -3.6549 1.8752 38 1 6.0906 -4.6602 2.9588 39 1 6.3499 -5.6737 1.5160 40 1 2.2881 -3.9947 0.4528 41 1 2.2143 -7.0058 -0.1493 42 1 -0.1555 -7.6004 -1.3746 43 1 -2.3018 -6.1547 -2.1089 44 1 -1.8423 -3.6698 -1.4199 45 1 3.3059 -2.9060 1.9327 46 1 4.9996 -2.3544 1.9487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088254455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:46 Heat of formation + Delta-G solvation = 24.117705 kcal Electronic energy + Delta-G solvation = -28207.050430 eV Core-core repulsion = 24485.750621 eV Total energy + Delta-G solvation = -3721.299809 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.18925 -40.46102 -37.74025 -35.22310 -33.97651 -33.77395 -32.71115 -32.18073 -30.31976 -28.78214 -27.55218 -26.31548 -24.38247 -23.31182 -22.25356 -21.50164 -20.95827 -20.14460 -19.25421 -18.41768 -17.69683 -17.30247 -16.43065 -16.22016 -15.77241 -15.64882 -14.70796 -14.60683 -14.40747 -14.13596 -14.02266 -13.44933 -13.30341 -12.82927 -12.73858 -12.61523 -12.60552 -12.37231 -12.17841 -12.00105 -11.74086 -11.56005 -11.28452 -11.03737 -10.88091 -10.77915 -10.42296 -10.35856 -10.29602 -10.24280 -9.91356 -9.69375 -9.61820 -9.54216 -9.09455 -8.29921 -7.66160 -7.29980 -5.82721 -3.18906 0.73735 2.44396 2.92935 3.32148 3.33791 3.35604 3.36341 3.42609 3.75820 4.53288 4.68286 4.94319 4.99151 5.04571 5.14686 5.20165 5.27090 5.29585 5.34351 5.43640 5.47028 5.52552 5.62895 5.72718 5.76339 5.86683 5.88935 5.93019 5.97037 6.00751 6.02989 6.06785 6.19759 6.28111 6.35205 6.37899 6.41375 6.44033 6.53697 6.65604 6.75173 6.76783 6.98574 7.42802 7.67592 7.95419 8.36411 8.48612 9.13927 9.85799 10.04347 11.34782 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007885 B = 0.007224 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.308960 B = 3875.038161 C = 6825.199998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.881 3.119 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.097 0.903 9 N -0.744 5.744 10 C 0.160 3.840 11 H 0.069 0.931 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.149 4.149 16 C 0.114 3.886 17 N -0.597 5.597 18 C 0.555 3.445 19 O -0.564 6.564 20 C -0.210 4.210 21 C 0.000 4.000 22 C -0.012 4.012 23 C -0.174 4.174 24 C -0.236 4.236 25 C 0.004 3.996 26 O -0.141 6.141 27 C 0.084 3.916 28 H 0.259 0.741 29 H 0.362 0.638 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.086 0.914 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.148 0.852 44 H 0.206 0.794 45 H 0.080 0.920 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -9.507 -0.518 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.711 3.289 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.115 0.885 9 N -0.386 5.386 10 C 0.050 3.950 11 H 0.086 0.914 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.187 4.187 16 C -0.010 4.010 17 N -0.329 5.329 18 C 0.348 3.652 19 O -0.446 6.446 20 C -0.230 4.230 21 C -0.020 4.020 22 C -0.062 4.062 23 C -0.194 4.194 24 C -0.255 4.255 25 C -0.067 4.067 26 O -0.034 6.034 27 C -0.041 4.041 28 H 0.069 0.931 29 H 0.195 0.805 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.169 0.831 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.166 0.834 44 H 0.222 0.778 45 H 0.098 0.902 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.543 -9.864 -0.357 12.423 hybrid contribution 0.332 1.384 -0.055 1.424 sum 7.875 -8.480 -0.412 11.580 Atomic orbital electron populations 1.69692 1.05010 1.25710 1.57087 1.24641 0.95190 0.97002 1.01818 0.86618 0.79260 0.85262 0.77742 1.21184 1.21845 1.20343 1.19131 0.80294 0.94921 1.43324 0.88538 1.42798 1.04156 1.01759 1.89865 1.20859 0.91315 0.89794 0.93072 0.91354 1.22119 0.96915 0.97063 1.01006 1.21645 0.97492 0.97781 0.98574 1.21705 0.97752 1.00921 0.94707 1.22328 0.99162 1.00696 0.96495 1.21387 0.81851 0.99710 0.98020 1.47750 1.14114 1.08132 1.62936 1.16943 0.85427 0.84778 0.78072 1.90764 1.76724 1.18996 1.58154 1.22635 0.95372 1.02317 1.02712 1.20559 0.88391 0.99893 0.93205 1.19901 0.96269 0.83060 1.07000 1.22227 0.94213 1.00156 1.02771 1.21694 1.01294 0.93623 1.08860 1.24460 0.85744 0.99234 0.97256 1.84326 1.28005 1.30406 1.60645 1.22601 1.00581 0.79730 1.01160 0.93129 0.80497 0.91654 0.91741 0.92727 0.91748 0.92414 0.92196 0.89628 0.91359 0.92427 0.89521 0.83105 0.83006 0.83244 0.83401 0.77768 0.90180 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.33 13.97 55.49 0.78 -26.56 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.88 21.04 27.73 -169.99 -4.71 16.33 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 7 C -0.25 -6.41 10.36 -15.06 -0.16 -6.57 16 8 H 0.10 2.69 6.85 -52.49 -0.36 2.33 16 9 N -0.74 -16.12 4.93 -53.61 -0.26 -16.38 16 10 C 0.16 2.85 1.89 -68.12 -0.13 2.72 16 11 H 0.07 1.34 5.02 -51.93 -0.26 1.08 16 12 C -0.13 -1.99 4.97 -26.60 -0.13 -2.12 16 13 C -0.12 -1.59 5.40 -26.52 -0.14 -1.74 16 14 C -0.11 -1.30 5.75 -26.29 -0.15 -1.45 16 15 C -0.15 -1.66 5.45 -26.56 -0.14 -1.81 16 16 C 0.11 1.47 5.99 -4.44 -0.03 1.45 16 17 N -0.60 -9.16 1.69 -178.12 -0.30 -9.46 16 18 C 0.55 9.59 6.08 -15.00 -0.09 9.50 16 19 O -0.56 -10.70 15.59 5.11 0.08 -10.62 16 20 C -0.21 -3.68 7.35 -39.25 -0.29 -3.96 16 21 C 0.00 -0.01 9.39 -39.23 -0.37 -0.38 16 22 C -0.01 -0.20 6.84 -38.40 -0.26 -0.47 16 23 C -0.17 -2.44 10.90 -38.91 -0.42 -2.86 16 24 C -0.24 -3.19 10.87 -39.90 -0.43 -3.62 16 25 C 0.00 0.06 12.06 29.64 0.36 0.41 16 26 O -0.14 -2.66 10.18 4.69 0.05 -2.61 16 27 C 0.08 1.37 4.47 -4.40 -0.02 1.35 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.36 7.77 5.67 -40.82 -0.23 7.53 16 30 H 0.07 0.89 5.47 -51.93 -0.28 0.61 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.00 5.37 -51.93 -0.28 0.72 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.09 1.02 3.35 -51.93 -0.17 0.85 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.20 6.84 -51.93 -0.36 0.84 16 40 H 0.15 2.97 3.96 -52.49 -0.21 2.76 16 41 H 0.15 2.19 7.47 -52.49 -0.39 1.80 16 42 H 0.15 1.66 8.06 -52.48 -0.42 1.23 16 43 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.21 2.77 8.06 -52.49 -0.42 2.35 16 45 H 0.08 1.47 7.51 -51.93 -0.39 1.08 16 46 H 0.08 1.17 6.06 -51.93 -0.31 0.85 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -30.67 352.73 -7.78 -38.45 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -6.21 Total: 14.92 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.51 Total: -9.38 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 0.21 Total: -52.40 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.13 Total: -13.23 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.71 Total: 16.33 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.67 -7.78 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088254455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.571 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds