Wall clock time and date at job start Tue Mar 31 2020 12:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86803 * 119.99570 * 2 1 4 4 H 1.48501 * 109.46861 * 269.99994 * 3 2 1 5 5 H 1.48497 * 109.47089 * 30.00240 * 3 2 1 6 6 H 1.48496 * 109.46781 * 150.00289 * 3 2 1 7 7 C 1.38808 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00375 * 359.97438 * 7 2 1 9 9 N 1.36932 * 119.99838 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00018 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.52433 * 34.87114 * 10 9 7 12 12 C 1.53805 * 109.52288 * 154.99830 * 10 9 7 13 13 C 1.52444 * 109.40344 * 197.73802 * 12 10 9 14 14 C 1.53953 * 110.73391 * 246.27352 * 13 12 10 15 15 C 1.52886 * 109.72950 * 44.36729 * 14 13 12 16 16 C 1.53440 * 109.38649 * 72.89392 * 15 14 13 17 17 N 1.45335 * 108.41858 * 282.28315 * 16 15 14 18 18 C 1.34768 * 120.37042 * 136.65906 * 17 16 15 19 19 O 1.21783 * 119.99872 * 4.28459 * 18 17 16 20 20 C 1.41554 * 120.00206 * 184.28552 * 18 17 16 21 21 C 1.35631 * 120.00028 * 174.76362 * 20 18 17 22 22 C 1.41607 * 119.99680 * 180.02562 * 21 20 18 23 23 C 1.37952 * 126.10198 * 179.97438 * 22 21 20 24 24 C 1.40308 * 106.53117 * 179.97438 * 23 22 21 25 25 C 1.35155 * 107.20493 * 0.02562 * 24 23 22 26 26 O 1.34016 * 109.03476 * 359.97438 * 25 24 23 27 27 C 1.46962 * 119.26257 * 316.92671 * 17 16 15 28 28 H 0.96999 * 119.99842 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99902 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47996 * 77.76151 * 12 10 9 31 31 H 1.08995 * 109.48268 * 317.72254 * 12 10 9 32 32 H 1.09002 * 109.22645 * 125.94892 * 13 12 10 33 33 H 1.09006 * 109.18898 * 6.57649 * 13 12 10 34 34 H 1.08996 * 109.42570 * 284.28717 * 14 13 12 35 35 H 1.08997 * 109.43044 * 164.44385 * 14 13 12 36 36 H 1.08999 * 109.48107 * 312.92069 * 15 14 13 37 37 H 1.09001 * 109.49788 * 192.87937 * 15 14 13 38 38 H 1.08999 * 109.67553 * 162.54329 * 16 15 14 39 39 H 1.09005 * 109.70782 * 42.03133 * 16 15 14 40 40 H 1.07999 * 119.99945 * 354.76563 * 20 18 17 41 41 H 1.08002 * 119.99521 * 0.02562 * 21 20 18 42 42 H 1.08004 * 126.72965 * 0.02562 * 23 22 21 43 43 H 1.08000 * 126.39737 * 180.02562 * 24 23 22 44 44 H 1.07995 * 125.48299 * 180.26242 * 25 24 23 45 45 H 1.08999 * 109.53819 * 231.25022 * 27 17 16 46 46 H 1.08998 * 109.53646 * 351.48311 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3796 -1.2020 -0.0011 10 6 4.1122 -2.4708 -0.0011 11 1 3.5643 -3.2078 -0.5880 12 6 5.5067 -2.2591 -0.6143 13 6 6.0917 -3.6072 -1.0196 14 6 7.3234 -3.9472 -0.1608 15 6 7.0318 -3.6336 1.3069 16 6 6.0639 -4.6829 1.8693 17 7 4.7233 -4.3664 1.4058 18 6 3.9087 -5.3425 0.9589 19 8 4.2648 -6.5058 1.0144 20 6 2.6391 -5.0157 0.4249 21 6 1.8634 -5.9847 -0.1218 22 6 0.5936 -5.6576 -0.6564 23 6 -0.2941 -6.5379 -1.2395 24 6 -1.4129 -5.7822 -1.6216 25 6 -1.1703 -4.5010 -1.2661 26 8 0.0358 -4.4292 -0.6863 27 6 4.2681 -2.9692 1.4244 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3619 -0.0014 30 1 6.1587 -1.7858 0.1199 31 1 5.4241 -1.6196 -1.4931 32 1 6.3848 -3.5705 -2.0688 33 1 5.3357 -4.3808 -0.8851 34 1 8.1741 -3.3541 -0.4962 35 1 7.5572 -5.0066 -0.2655 36 1 6.5808 -2.6443 1.3845 37 1 7.9617 -3.6549 1.8752 38 1 6.0906 -4.6602 2.9588 39 1 6.3499 -5.6737 1.5160 40 1 2.2881 -3.9947 0.4528 41 1 2.2143 -7.0058 -0.1493 42 1 -0.1555 -7.6004 -1.3746 43 1 -2.3018 -6.1547 -2.1089 44 1 -1.8423 -3.6698 -1.4199 45 1 3.3059 -2.9060 1.9327 46 1 4.9996 -2.3544 1.9487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088254455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:44 Heat of formation + Delta-G solvation = 6.224680 kcal Electronic energy + Delta-G solvation = -28207.826330 eV Core-core repulsion = 24485.750621 eV Total energy + Delta-G solvation = -3722.075709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.45804 -41.75307 -39.06514 -36.73724 -35.20705 -35.12127 -34.02155 -33.85448 -31.91083 -30.08884 -28.88875 -27.47606 -25.81345 -24.94567 -23.42827 -22.71116 -22.46558 -21.34789 -20.45946 -19.85914 -19.39544 -18.67381 -17.66819 -17.47564 -17.14036 -16.98638 -16.40353 -15.91890 -15.75593 -15.55294 -15.21046 -14.93821 -14.57308 -14.44351 -14.10669 -13.88737 -13.78565 -13.59511 -13.47461 -13.32642 -13.23069 -12.87437 -12.80594 -12.59464 -12.11691 -12.03135 -11.82737 -11.75449 -11.62355 -11.52931 -11.46003 -11.23057 -10.99894 -10.93977 -10.79544 -9.71947 -9.20800 -8.85401 -7.94069 -5.28248 -0.56541 1.18611 1.40826 1.43481 1.50345 1.73086 2.10380 2.15077 2.42212 2.53112 3.35812 3.44142 3.74271 3.80872 3.96569 4.01872 4.05964 4.08201 4.14014 4.16402 4.21184 4.25873 4.40627 4.51410 4.59756 4.71483 4.72460 4.77549 4.84803 4.86407 4.92421 5.01873 5.04581 5.08431 5.13315 5.19689 5.24810 5.27717 5.40233 5.45609 5.55622 5.61563 5.73676 5.88923 6.20125 6.27550 6.37672 7.14052 7.16067 7.87575 8.07706 9.26253 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.007885 B = 0.007224 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.308960 B = 3875.038161 C = 6825.199998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.976 5.976 2 C -0.058 4.058 3 Si 0.946 3.054 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.247 1.247 7 C -0.224 4.224 8 H 0.064 0.936 9 N -0.745 5.745 10 C 0.159 3.841 11 H 0.045 0.955 12 C -0.125 4.125 13 C -0.115 4.115 14 C -0.109 4.109 15 C -0.142 4.142 16 C 0.108 3.892 17 N -0.591 5.591 18 C 0.557 3.443 19 O -0.584 6.584 20 C -0.237 4.237 21 C 0.019 3.981 22 C -0.052 4.052 23 C -0.151 4.151 24 C -0.220 4.220 25 C -0.022 4.022 26 O -0.184 6.184 27 C 0.098 3.902 28 H 0.254 0.746 29 H 0.367 0.633 30 H 0.087 0.913 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.172 0.828 42 H 0.186 0.814 43 H 0.186 0.814 44 H 0.213 0.787 45 H 0.050 0.950 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 -10.179 -0.647 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.250 4.250 3 Si 0.774 3.226 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.172 1.172 7 C -0.354 4.354 8 H 0.082 0.918 9 N -0.388 5.388 10 C 0.050 3.950 11 H 0.063 0.937 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.146 4.146 15 C -0.179 4.179 16 C -0.014 4.014 17 N -0.321 5.321 18 C 0.350 3.650 19 O -0.469 6.469 20 C -0.257 4.257 21 C -0.001 4.001 22 C -0.101 4.101 23 C -0.170 4.170 24 C -0.239 4.239 25 C -0.091 4.091 26 O -0.079 6.079 27 C -0.027 4.027 28 H 0.063 0.937 29 H 0.201 0.799 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.140 0.860 41 H 0.189 0.811 42 H 0.204 0.796 43 H 0.203 0.797 44 H 0.230 0.770 45 H 0.068 0.932 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.048 -10.562 -0.475 14.586 hybrid contribution -0.551 1.419 -0.088 1.525 sum 9.498 -9.143 -0.564 13.195 Atomic orbital electron populations 1.69877 1.06877 1.26128 1.59761 1.25382 0.96002 1.00642 1.02956 0.85551 0.79001 0.80352 0.77711 1.21155 1.22910 1.17184 1.19042 0.82212 0.93552 1.40643 0.91818 1.42741 1.02655 1.03474 1.89936 1.20961 0.92438 0.87609 0.93966 0.93671 1.22045 0.95060 0.98051 1.01080 1.21608 0.97945 0.96050 0.99700 1.21695 0.97042 1.01483 0.94406 1.22302 0.99779 0.99313 0.96550 1.21635 0.80642 1.00195 0.98953 1.47700 1.14969 1.07162 1.62304 1.16864 0.85369 0.84818 0.77910 1.90734 1.77164 1.19544 1.59458 1.22415 0.96491 1.01365 1.05474 1.20808 0.87899 1.00289 0.91075 1.20282 0.97322 0.83159 1.09325 1.22744 0.92963 1.01456 0.99825 1.22132 1.02112 0.92269 1.07362 1.24962 0.85315 1.01041 0.97786 1.84298 1.29508 1.32145 1.61956 1.22270 0.99988 0.80693 0.99717 0.93732 0.79919 0.89424 0.92348 0.92027 0.94151 0.90275 0.91999 0.90073 0.88306 0.91028 0.90190 0.85979 0.81086 0.79624 0.79697 0.77023 0.93167 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.27 13.97 21.65 0.30 -59.97 16 2 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 3 Si 0.95 43.87 27.73 68.60 1.90 45.78 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.25 -10.13 6.52 99.48 0.65 -9.48 16 7 C -0.22 -12.11 10.36 84.03 0.87 -11.24 16 8 H 0.06 3.85 6.85 -2.91 -0.02 3.83 16 9 N -0.74 -32.59 4.93 -323.52 -1.59 -34.19 16 10 C 0.16 5.74 1.89 44.87 0.08 5.82 16 11 H 0.05 1.87 5.02 -2.39 -0.01 1.86 16 12 C -0.12 -3.53 4.97 30.68 0.15 -3.38 16 13 C -0.11 -2.95 5.40 30.73 0.17 -2.78 16 14 C -0.11 -2.14 5.75 30.88 0.18 -1.97 16 15 C -0.14 -2.66 5.45 30.70 0.17 -2.49 16 16 C 0.11 2.58 5.99 86.75 0.52 3.10 16 17 N -0.59 -18.02 1.69 -835.62 -1.42 -19.43 16 18 C 0.56 19.77 6.08 85.06 0.52 20.28 16 19 O -0.58 -22.31 15.59 -4.61 -0.07 -22.38 16 20 C -0.24 -8.84 7.35 22.48 0.17 -8.67 16 21 C 0.02 0.64 9.39 22.50 0.21 0.85 16 22 C -0.05 -1.78 6.84 23.03 0.16 -1.62 16 23 C -0.15 -4.00 10.90 22.71 0.25 -3.75 16 24 C -0.22 -5.64 10.87 22.06 0.24 -5.40 16 25 C -0.02 -0.70 12.06 67.11 0.81 0.11 16 26 O -0.18 -7.46 10.18 -6.12 -0.06 -7.52 16 27 C 0.10 3.21 4.47 85.90 0.38 3.59 16 28 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.37 15.27 5.67 -92.71 -0.53 14.74 16 30 H 0.09 2.11 5.47 -2.38 -0.01 2.09 16 31 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.04 1.24 5.37 -2.38 -0.01 1.23 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.23 7.87 -2.39 -0.02 1.21 16 36 H 0.08 1.62 3.35 -2.39 -0.01 1.61 16 37 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.07 6.84 -2.38 -0.02 2.06 16 40 H 0.12 5.31 3.96 -2.91 -0.01 5.29 16 41 H 0.17 4.91 7.47 -2.91 -0.02 4.89 16 42 H 0.19 3.47 8.06 -2.91 -0.02 3.45 16 43 H 0.19 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.21 6.15 8.06 -2.91 -0.02 6.13 16 45 H 0.05 1.94 7.51 -2.39 -0.02 1.93 16 46 H 0.10 2.87 6.06 -2.39 -0.01 2.86 16 Total: -1.00 -70.52 352.73 4.83 -65.69 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: 0.43 Total: 42.40 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.34 Total: -10.37 kcal Atomic # 7 Polarization: -110.88 SS G_CDS: -2.71 Total: -113.59 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.13 Total: -29.91 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.90 Total: 45.78 kcal Total: -70.52 4.83 -65.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088254455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.916 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds