Wall clock time and date at job start Tue Mar 31 2020 12:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.54072 * 112.57669 * 2 1 4 4 N 1.48335 * 104.51359 * 97.43520 * 3 2 1 5 5 C 1.36943 * 128.19557 * 221.79106 * 4 3 2 6 6 H 1.07996 * 119.99782 * 15.64080 * 5 4 3 7 7 C 1.38813 * 119.99635 * 195.63294 * 5 4 3 8 8 N 1.31618 * 120.00311 * 9.48301 * 7 5 4 9 9 Si 1.86796 * 119.99617 * 189.19850 * 7 5 4 10 10 H 1.48505 * 109.47109 * 85.00414 * 9 7 5 11 11 H 1.48497 * 109.47496 * 204.99980 * 9 7 5 12 12 H 1.48497 * 109.47525 * 325.00620 * 9 7 5 13 13 C 1.48332 * 103.60400 * 41.53361 * 4 3 2 14 14 C 1.54452 * 104.32444 * 318.43315 * 13 4 3 15 15 H 1.09001 * 112.29715 * 263.01357 * 14 13 4 16 16 C 1.53736 * 109.01408 * 137.92733 * 14 13 4 17 17 N 1.47195 * 106.43099 * 229.45465 * 16 14 13 18 18 C 1.34772 * 126.70869 * 211.33359 * 17 16 14 19 19 O 1.21283 * 120.00498 * 180.02562 * 18 17 16 20 20 C 1.50704 * 119.99598 * 0.02562 * 18 17 16 21 21 C 1.53002 * 109.47002 * 180.02562 * 20 18 17 22 22 C 1.50693 * 109.46964 * 179.97438 * 21 20 18 23 23 C 1.34519 * 125.79210 * 89.71494 * 22 21 20 24 24 C 1.41379 * 106.84270 * 179.88494 * 23 22 21 25 25 C 1.34510 * 106.84160 * 0.37622 * 24 23 22 26 26 O 1.34303 * 108.42043 * 359.76424 * 25 24 23 27 27 C 1.47199 * 106.59162 * 31.36626 * 17 16 14 28 28 H 1.08994 * 109.47135 * 302.11362 * 1 2 3 29 29 H 1.08994 * 109.47017 * 62.11477 * 1 2 3 30 30 H 1.08994 * 109.46614 * 182.10909 * 1 2 3 31 31 H 1.09001 * 110.39926 * 338.65084 * 3 2 1 32 32 H 1.08998 * 110.33939 * 216.19353 * 3 2 1 33 33 H 0.96993 * 120.00239 * 179.72496 * 8 7 5 34 34 H 1.09000 * 110.46122 * 77.13802 * 13 4 3 35 35 H 1.09000 * 110.46191 * 199.58959 * 13 4 3 36 36 H 1.09004 * 110.06367 * 348.69402 * 16 14 13 37 37 H 1.09002 * 110.06510 * 110.21302 * 16 14 13 38 38 H 1.09004 * 109.46640 * 299.99358 * 20 18 17 39 39 H 1.08990 * 109.47401 * 59.99840 * 20 18 17 40 40 H 1.09005 * 109.46976 * 300.00044 * 21 20 18 41 41 H 1.09004 * 109.47475 * 59.99670 * 21 20 18 42 42 H 1.08001 * 126.57444 * 0.02751 * 23 22 21 43 43 H 1.08007 * 126.57716 * 180.12267 * 24 23 22 44 44 H 1.08002 * 125.79114 * 179.79349 * 25 24 23 45 45 H 1.09003 * 110.06300 * 87.86996 * 27 17 16 46 46 H 1.08995 * 110.06597 * 209.33225 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.4227 0.0000 4 7 2.4359 1.6946 1.4239 5 6 2.2328 2.8501 2.1302 6 1 1.5753 3.6129 1.7401 7 6 2.8720 3.0408 3.3476 8 7 3.8115 2.2048 3.7357 9 14 2.4043 4.4887 4.4312 10 1 1.2316 4.1237 5.2660 11 1 3.5484 4.8385 5.3110 12 1 2.0610 5.6548 3.5784 13 6 3.0163 0.4165 1.9033 14 6 2.1222 -0.6712 1.2684 15 1 1.3494 -1.0224 1.9521 16 6 3.0123 -1.8157 0.7573 17 7 2.5900 -2.0854 -0.6268 18 6 2.6196 -3.2742 -1.2610 19 8 2.2403 -3.3583 -2.4099 20 6 3.1241 -4.4991 -0.5425 21 6 3.0533 -5.7059 -1.4804 22 6 3.5584 -6.9305 -0.7621 23 6 2.8114 -7.7792 -0.0332 24 6 3.6843 -8.7793 0.4531 25 6 4.9140 -8.4775 -0.0008 26 8 4.8317 -7.3568 -0.7364 27 6 2.1296 -0.8027 -1.1832 28 1 -0.3633 0.5463 0.8704 29 1 -0.3633 0.4806 -0.9083 30 1 -0.3632 -1.0269 0.0378 31 1 1.3888 2.1388 -0.3719 32 1 3.0286 1.4558 -0.6035 33 1 4.2610 2.3403 4.5845 34 1 4.0453 0.3125 1.5593 35 1 2.9717 0.3620 2.9911 36 1 4.0591 -1.5125 0.7764 37 1 2.8685 -2.7044 1.3719 38 1 4.1573 -4.3394 -0.2339 39 1 2.5069 -4.6848 0.3364 40 1 2.0203 -5.8656 -1.7895 41 1 3.6709 -5.5199 -2.3591 42 1 1.7482 -7.7109 0.1444 43 1 3.4160 -9.6216 1.0736 44 1 5.8148 -9.0411 0.1929 45 1 2.9692 -0.2616 -1.6196 46 1 1.3636 -0.9763 -1.9389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091478674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:30 Heat of formation + Delta-G solvation = 6.358838 kcal Electronic energy + Delta-G solvation = -26701.447962 eV Core-core repulsion = 22979.378071 eV Total energy + Delta-G solvation = -3722.069891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.74987 -40.27319 -38.49082 -35.03054 -34.22606 -33.00363 -32.69472 -30.91630 -29.93881 -29.13689 -26.75210 -25.86199 -25.15926 -24.08258 -22.26827 -21.94456 -20.58457 -20.47761 -19.13036 -18.43739 -17.68902 -16.83772 -16.54494 -16.22911 -15.98931 -15.34924 -14.89584 -14.69343 -14.35761 -14.25897 -13.60109 -13.52035 -13.19900 -13.02569 -12.88866 -12.81710 -12.60360 -12.45681 -12.15703 -12.05507 -11.69069 -11.63791 -11.35752 -11.26801 -11.02146 -10.86179 -10.66180 -10.23476 -10.14904 -10.11368 -10.02022 -9.83652 -9.72729 -9.62447 -8.72029 -8.65255 -8.49622 -6.90413 -5.83638 -3.18033 1.51642 2.40452 2.68576 2.76434 3.17242 3.35521 3.41220 3.42413 4.34846 4.42410 4.66849 4.76029 4.77577 4.84715 4.88390 4.97065 5.06931 5.21273 5.33170 5.45234 5.46171 5.52342 5.57477 5.61393 5.64676 5.70242 5.74829 5.79340 5.92508 5.95591 6.02655 6.06717 6.12110 6.27579 6.30232 6.35930 6.40373 6.52119 6.65732 6.72220 6.86831 6.94701 7.24376 7.46680 7.66120 7.69926 8.15512 8.22180 9.06003 9.69315 10.47274 11.30323 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.002666 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.077437 B =10499.064165 C =11404.949272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C 0.137 3.863 4 N -0.593 5.593 5 C -0.224 4.224 6 H 0.076 0.924 7 C -0.005 4.005 8 N -0.915 5.915 9 Si 0.911 3.089 10 H -0.288 1.288 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.162 3.838 14 C -0.118 4.118 15 H 0.082 0.918 16 C 0.106 3.894 17 N -0.612 5.612 18 C 0.530 3.470 19 O -0.552 6.552 20 C -0.133 4.133 21 C -0.024 4.024 22 C -0.007 4.007 23 C -0.211 4.211 24 C -0.214 4.214 25 C -0.045 4.045 26 O -0.175 6.175 27 C 0.116 3.884 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.027 0.973 33 H 0.254 0.746 34 H 0.024 0.976 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.201 0.799 45 H 0.069 0.931 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -18.173 -6.411 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.088 4.088 3 C 0.010 3.990 4 N -0.316 5.316 5 C -0.352 4.352 6 H 0.094 0.906 7 C -0.202 4.202 8 N -0.562 5.562 9 Si 0.742 3.258 10 H -0.215 1.215 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.035 3.965 14 C -0.139 4.139 15 H 0.100 0.900 16 C -0.017 4.017 17 N -0.345 5.345 18 C 0.319 3.681 19 O -0.431 6.431 20 C -0.173 4.173 21 C -0.061 4.061 22 C -0.057 4.057 23 C -0.230 4.230 24 C -0.233 4.233 25 C -0.113 4.113 26 O -0.072 6.072 27 C -0.007 4.007 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.166 0.834 43 H 0.165 0.835 44 H 0.218 0.782 45 H 0.087 0.913 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.884 -17.980 -6.984 19.309 hybrid contribution -0.175 0.473 0.953 1.078 sum -1.059 -17.507 -6.031 18.547 Atomic orbital electron populations 1.21560 0.93440 1.00745 1.01884 1.22534 0.95571 0.97232 0.93446 1.21774 0.96665 0.92044 0.88552 1.45034 1.72456 1.09893 1.04181 1.18975 1.21281 0.94180 1.00808 0.90619 1.24875 0.97176 0.98812 0.99377 1.69867 1.25554 1.38390 1.22363 0.86152 0.77410 0.81824 0.80442 1.21480 1.21673 1.20634 1.21752 0.92039 0.82282 1.00377 1.23263 0.98450 0.95524 0.96704 0.89955 1.22359 0.99367 0.98787 0.81225 1.48646 1.63087 1.07882 1.14871 1.20129 0.78263 0.83263 0.86410 1.90690 1.49380 1.85368 1.17651 1.21637 1.03927 0.92063 0.99711 1.19851 1.02641 0.86741 0.96889 1.22490 0.81517 0.98989 1.02706 1.21634 1.01118 0.97002 1.03293 1.21843 0.93177 1.02380 1.05902 1.24029 1.00260 0.88909 0.98102 1.84035 1.29461 1.36261 1.57398 1.22401 0.98918 0.83027 0.96316 0.91687 0.93037 0.93521 0.93181 0.95522 0.93573 0.95772 0.89236 0.90712 0.91123 0.88468 0.88398 0.88015 0.89229 0.83443 0.83531 0.78202 0.91280 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.65 37.16 0.32 -1.47 16 2 C -0.09 -1.41 1.10 -151.68 -0.17 -1.57 16 3 C 0.14 2.68 6.40 -2.47 -0.02 2.66 16 4 N -0.59 -14.25 3.38 -168.71 -0.57 -14.82 16 5 C -0.22 -5.97 10.37 -15.06 -0.16 -6.13 16 6 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 7 C -0.01 -0.14 5.40 -17.43 -0.09 -0.24 16 8 N -0.92 -25.74 10.89 55.49 0.60 -25.14 16 9 Si 0.91 21.34 29.56 -169.99 -5.03 16.32 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.16 3.55 5.50 -2.27 -0.01 3.53 16 14 C -0.12 -2.02 3.71 -88.29 -0.33 -2.35 16 15 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 16 C 0.11 1.50 6.38 -3.28 -0.02 1.48 16 17 N -0.61 -8.94 3.32 -170.84 -0.57 -9.50 16 18 C 0.53 7.53 7.88 -10.99 -0.09 7.44 16 19 O -0.55 -9.44 16.21 5.55 0.09 -9.35 16 20 C -0.13 -1.42 4.66 -27.88 -0.13 -1.55 16 21 C -0.02 -0.24 5.04 -27.89 -0.14 -0.38 16 22 C -0.01 -0.07 6.58 -35.63 -0.23 -0.31 16 23 C -0.21 -2.08 10.81 -39.70 -0.43 -2.51 16 24 C -0.21 -1.89 10.91 -39.71 -0.43 -2.33 16 25 C -0.05 -0.39 12.09 29.41 0.36 -0.04 16 26 O -0.18 -1.93 10.65 5.71 0.06 -1.87 16 27 C 0.12 1.79 6.26 -2.58 -0.02 1.77 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 32 H 0.03 0.53 7.18 -51.93 -0.37 0.16 16 33 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.02 0.56 7.18 -51.93 -0.37 0.18 16 35 H 0.09 2.23 6.45 -51.93 -0.34 1.89 16 36 H 0.07 1.10 7.11 -51.93 -0.37 0.73 16 37 H 0.07 0.84 7.31 -51.93 -0.38 0.46 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.92 7.86 -51.93 -0.41 0.51 16 40 H 0.10 1.01 8.10 -51.93 -0.42 0.59 16 41 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.07 1.08 7.15 -51.93 -0.37 0.71 16 46 H 0.07 1.13 7.64 -51.93 -0.40 0.74 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -31.20 369.87 -8.60 -39.79 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.18 Total: 0.99 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.59 Total: -1.98 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.53 Total: -49.46 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.15 Total: -11.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.20 -8.60 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091478674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.153 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds