Wall clock time and date at job start Tue Mar 31 2020 12:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.54072 * 112.57669 * 2 1 4 4 N 1.48335 * 104.51359 * 97.43520 * 3 2 1 5 5 C 1.36943 * 128.19557 * 221.79106 * 4 3 2 6 6 H 1.07996 * 119.99782 * 15.64080 * 5 4 3 7 7 C 1.38813 * 119.99635 * 195.63294 * 5 4 3 8 8 N 1.31618 * 120.00311 * 9.48301 * 7 5 4 9 9 Si 1.86796 * 119.99617 * 189.19850 * 7 5 4 10 10 H 1.48505 * 109.47109 * 85.00414 * 9 7 5 11 11 H 1.48497 * 109.47496 * 204.99980 * 9 7 5 12 12 H 1.48497 * 109.47525 * 325.00620 * 9 7 5 13 13 C 1.48332 * 103.60400 * 41.53361 * 4 3 2 14 14 C 1.54452 * 104.32444 * 318.43315 * 13 4 3 15 15 H 1.09001 * 112.29715 * 263.01357 * 14 13 4 16 16 C 1.53736 * 109.01408 * 137.92733 * 14 13 4 17 17 N 1.47195 * 106.43099 * 229.45465 * 16 14 13 18 18 C 1.34772 * 126.70869 * 211.33359 * 17 16 14 19 19 O 1.21283 * 120.00498 * 180.02562 * 18 17 16 20 20 C 1.50704 * 119.99598 * 0.02562 * 18 17 16 21 21 C 1.53002 * 109.47002 * 180.02562 * 20 18 17 22 22 C 1.50693 * 109.46964 * 179.97438 * 21 20 18 23 23 C 1.34519 * 125.79210 * 89.71494 * 22 21 20 24 24 C 1.41379 * 106.84270 * 179.88494 * 23 22 21 25 25 C 1.34510 * 106.84160 * 0.37622 * 24 23 22 26 26 O 1.34303 * 108.42043 * 359.76424 * 25 24 23 27 27 C 1.47199 * 106.59162 * 31.36626 * 17 16 14 28 28 H 1.08994 * 109.47135 * 302.11362 * 1 2 3 29 29 H 1.08994 * 109.47017 * 62.11477 * 1 2 3 30 30 H 1.08994 * 109.46614 * 182.10909 * 1 2 3 31 31 H 1.09001 * 110.39926 * 338.65084 * 3 2 1 32 32 H 1.08998 * 110.33939 * 216.19353 * 3 2 1 33 33 H 0.96993 * 120.00239 * 179.72496 * 8 7 5 34 34 H 1.09000 * 110.46122 * 77.13802 * 13 4 3 35 35 H 1.09000 * 110.46191 * 199.58959 * 13 4 3 36 36 H 1.09004 * 110.06367 * 348.69402 * 16 14 13 37 37 H 1.09002 * 110.06510 * 110.21302 * 16 14 13 38 38 H 1.09004 * 109.46640 * 299.99358 * 20 18 17 39 39 H 1.08990 * 109.47401 * 59.99840 * 20 18 17 40 40 H 1.09005 * 109.46976 * 300.00044 * 21 20 18 41 41 H 1.09004 * 109.47475 * 59.99670 * 21 20 18 42 42 H 1.08001 * 126.57444 * 0.02751 * 23 22 21 43 43 H 1.08007 * 126.57716 * 180.12267 * 24 23 22 44 44 H 1.08002 * 125.79114 * 179.79349 * 25 24 23 45 45 H 1.09003 * 110.06300 * 87.86996 * 27 17 16 46 46 H 1.08995 * 110.06597 * 209.33225 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1216 1.4227 0.0000 4 7 2.4359 1.6946 1.4239 5 6 2.2328 2.8501 2.1302 6 1 1.5753 3.6129 1.7401 7 6 2.8720 3.0408 3.3476 8 7 3.8115 2.2048 3.7357 9 14 2.4043 4.4887 4.4312 10 1 1.2316 4.1237 5.2660 11 1 3.5484 4.8385 5.3110 12 1 2.0610 5.6548 3.5784 13 6 3.0163 0.4165 1.9033 14 6 2.1222 -0.6712 1.2684 15 1 1.3494 -1.0224 1.9521 16 6 3.0123 -1.8157 0.7573 17 7 2.5900 -2.0854 -0.6268 18 6 2.6196 -3.2742 -1.2610 19 8 2.2403 -3.3583 -2.4099 20 6 3.1241 -4.4991 -0.5425 21 6 3.0533 -5.7059 -1.4804 22 6 3.5584 -6.9305 -0.7621 23 6 2.8114 -7.7792 -0.0332 24 6 3.6843 -8.7793 0.4531 25 6 4.9140 -8.4775 -0.0008 26 8 4.8317 -7.3568 -0.7364 27 6 2.1296 -0.8027 -1.1832 28 1 -0.3633 0.5463 0.8704 29 1 -0.3633 0.4806 -0.9083 30 1 -0.3632 -1.0269 0.0378 31 1 1.3888 2.1388 -0.3719 32 1 3.0286 1.4558 -0.6035 33 1 4.2610 2.3403 4.5845 34 1 4.0453 0.3125 1.5593 35 1 2.9717 0.3620 2.9911 36 1 4.0591 -1.5125 0.7764 37 1 2.8685 -2.7044 1.3719 38 1 4.1573 -4.3394 -0.2339 39 1 2.5069 -4.6848 0.3364 40 1 2.0203 -5.8656 -1.7895 41 1 3.6709 -5.5199 -2.3591 42 1 1.7482 -7.7109 0.1444 43 1 3.4160 -9.6216 1.0736 44 1 5.8148 -9.0411 0.1929 45 1 2.9692 -0.2616 -1.6196 46 1 1.3636 -0.9763 -1.9389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091478674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:29 Heat of formation + Delta-G solvation = -10.934495 kcal Electronic energy + Delta-G solvation = -26702.197857 eV Core-core repulsion = 22979.378071 eV Total energy + Delta-G solvation = -3722.819786 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.44956 -41.55325 -39.80213 -36.57207 -35.09077 -34.39052 -33.66786 -32.49426 -31.49490 -29.99045 -28.03519 -27.42956 -26.65257 -25.15375 -23.69192 -22.62836 -22.19291 -21.25426 -20.36044 -19.76241 -18.67649 -18.42946 -17.66907 -17.15503 -17.01274 -16.74275 -16.36073 -15.90740 -15.73872 -15.41159 -15.10790 -14.92019 -14.40989 -14.05602 -13.86381 -13.69378 -13.57996 -13.50277 -13.34521 -13.23409 -13.11505 -13.00109 -12.92618 -12.70183 -12.55451 -12.24776 -12.06974 -11.90825 -11.76527 -11.56363 -11.40103 -11.35553 -10.92834 -10.79621 -10.68720 -9.71915 -9.34968 -8.84475 -7.87763 -5.23006 0.81408 1.48799 1.49637 1.57447 1.57916 1.72157 1.94450 2.21627 2.50824 3.29648 3.34592 3.49403 3.64607 3.90603 3.92025 3.96163 4.04789 4.12300 4.19477 4.22182 4.26578 4.33767 4.36109 4.53732 4.60013 4.70624 4.73483 4.76660 4.82871 4.93422 4.96572 4.99529 5.00253 5.05684 5.10493 5.15174 5.24649 5.27863 5.32120 5.43164 5.48519 5.60122 5.65870 5.73580 6.22470 6.25729 6.54675 7.05036 7.08971 7.71753 8.51730 9.25196 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.002666 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.077437 B =10499.064165 C =11404.949272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.075 4.075 3 C 0.134 3.866 4 N -0.618 5.618 5 C -0.234 4.234 6 H 0.077 0.923 7 C -0.059 4.059 8 N -0.944 5.944 9 Si 0.974 3.026 10 H -0.285 1.285 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.168 3.832 14 C -0.108 4.108 15 H 0.088 0.912 16 C 0.114 3.886 17 N -0.613 5.613 18 C 0.531 3.469 19 O -0.582 6.582 20 C -0.124 4.124 21 C -0.017 4.017 22 C -0.027 4.027 23 C -0.216 4.216 24 C -0.227 4.227 25 C -0.046 4.046 26 O -0.195 6.195 27 C 0.121 3.879 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.024 0.976 33 H 0.249 0.751 34 H 0.007 0.993 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.160 0.840 43 H 0.167 0.833 44 H 0.234 0.766 45 H 0.064 0.936 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.741 -19.785 -6.456 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C 0.009 3.991 4 N -0.341 5.341 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.253 4.253 8 N -0.592 5.592 9 Si 0.802 3.198 10 H -0.211 1.211 11 H -0.222 1.222 12 H -0.197 1.197 13 C 0.042 3.958 14 C -0.129 4.129 15 H 0.106 0.894 16 C -0.009 4.009 17 N -0.345 5.345 18 C 0.322 3.678 19 O -0.463 6.463 20 C -0.164 4.164 21 C -0.054 4.054 22 C -0.077 4.077 23 C -0.235 4.235 24 C -0.246 4.246 25 C -0.113 4.113 26 O -0.092 6.092 27 C -0.003 4.003 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.136 0.864 40 H 0.121 0.879 41 H 0.097 0.903 42 H 0.177 0.823 43 H 0.185 0.815 44 H 0.250 0.750 45 H 0.082 0.918 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.624 -19.605 -7.052 20.898 hybrid contribution 0.077 0.949 0.911 1.318 sum -1.547 -18.657 -6.141 19.702 Atomic orbital electron populations 1.21503 0.91960 1.01612 1.01900 1.22409 0.96571 0.95138 0.93667 1.21912 0.96768 0.94192 0.86277 1.45316 1.72646 1.10004 1.06156 1.19297 1.20753 0.95064 1.01170 0.90524 1.25622 0.97558 1.01425 1.00732 1.70045 1.26715 1.39975 1.22427 0.85171 0.76722 0.79256 0.78616 1.21144 1.22247 1.19697 1.21582 0.92228 0.83395 0.98570 1.23077 0.98041 0.95040 0.96733 0.89361 1.22244 0.98273 0.98947 0.81411 1.48659 1.63119 1.07819 1.14875 1.20706 0.77335 0.83679 0.86068 1.90680 1.50707 1.85770 1.19115 1.21634 1.04556 0.90268 0.99898 1.19738 1.02530 0.86770 0.96410 1.22503 0.81746 0.99578 1.03827 1.21935 1.01886 0.96939 1.02747 1.22187 0.93159 1.02918 1.06356 1.24772 1.01622 0.88076 0.96802 1.84022 1.29757 1.37277 1.58139 1.22263 0.98840 0.83424 0.95734 0.93301 0.91551 0.92039 0.92856 0.95790 0.94196 0.97493 0.92589 0.91180 0.87919 0.87557 0.86441 0.87867 0.90341 0.82268 0.81550 0.75002 0.91760 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.17 8.65 71.98 0.62 -2.55 16 2 C -0.08 -2.40 1.10 -50.35 -0.06 -2.45 16 3 C 0.13 5.25 6.40 86.39 0.55 5.81 16 4 N -0.62 -30.14 3.38 -687.67 -2.32 -32.46 16 5 C -0.23 -12.63 10.37 84.03 0.87 -11.76 16 6 H 0.08 4.00 7.85 -2.91 -0.02 3.98 16 7 C -0.06 -3.26 5.40 84.86 0.46 -2.80 16 8 N -0.94 -54.47 10.89 21.65 0.24 -54.24 16 9 Si 0.97 44.38 29.56 68.60 2.03 46.41 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 13 C 0.17 7.52 5.50 86.52 0.48 8.00 16 14 C -0.11 -3.58 3.71 -9.28 -0.03 -3.61 16 15 H 0.09 2.85 7.93 -2.39 -0.02 2.83 16 16 C 0.11 3.02 6.38 86.49 0.55 3.57 16 17 N -0.61 -16.65 3.32 -812.80 -2.70 -19.35 16 18 C 0.53 14.04 7.88 87.66 0.69 14.73 16 19 O -0.58 -19.13 16.21 -3.04 -0.05 -19.18 16 20 C -0.12 -2.36 4.66 29.85 0.14 -2.22 16 21 C -0.02 -0.33 5.04 29.85 0.15 -0.17 16 22 C -0.03 -0.53 6.58 24.83 0.16 -0.37 16 23 C -0.22 -3.81 10.81 22.19 0.24 -3.57 16 24 C -0.23 -3.49 10.91 22.19 0.24 -3.25 16 25 C -0.05 -0.69 12.09 66.97 0.81 0.12 16 26 O -0.20 -4.01 10.65 -2.50 -0.03 -4.03 16 27 C 0.12 3.53 6.26 86.95 0.54 4.07 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 31 H 0.05 2.01 7.92 -2.39 -0.02 2.00 16 32 H 0.02 0.96 7.18 -2.39 -0.02 0.94 16 33 H 0.25 14.01 8.31 -92.71 -0.77 13.23 16 34 H 0.01 0.34 7.18 -2.39 -0.02 0.32 16 35 H 0.06 2.87 6.45 -2.39 -0.02 2.86 16 36 H 0.07 1.97 7.11 -2.38 -0.02 1.95 16 37 H 0.10 2.11 7.31 -2.39 -0.02 2.09 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.12 1.81 7.86 -2.39 -0.02 1.80 16 40 H 0.10 1.92 8.10 -2.38 -0.02 1.90 16 41 H 0.08 1.66 8.10 -2.38 -0.02 1.65 16 42 H 0.16 2.29 8.06 -2.91 -0.02 2.26 16 43 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 44 H 0.23 1.55 8.06 -2.91 -0.02 1.53 16 45 H 0.06 1.95 7.15 -2.39 -0.02 1.93 16 46 H 0.08 2.25 7.64 -2.39 -0.02 2.23 16 Total: -1.00 -68.14 369.87 4.55 -63.59 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.96 Total: 15.73 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 6.42 Total: 3.53 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.78 Total: -106.05 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.08 Total: -23.21 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.14 4.55 -63.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091478674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.655 kcal (2) G-P(sol) polarization free energy of solvation -68.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds