Wall clock time and date at job start Tue Mar 31 2020 12:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.55969 * 112.62468 * 2 1 4 4 N 1.47209 * 106.70322 * 139.75876 * 3 2 1 5 5 C 1.36942 * 126.69970 * 149.02546 * 4 3 2 6 6 H 1.07997 * 120.00072 * 0.04834 * 5 4 3 7 7 C 1.38820 * 119.99628 * 180.02562 * 5 4 3 8 8 N 1.31613 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99696 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47322 * 59.99675 * 9 7 5 11 11 H 1.48498 * 109.47164 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46860 * 299.99848 * 9 7 5 13 13 C 1.47216 * 106.59912 * 329.04386 * 4 3 2 14 14 C 1.53780 * 106.37280 * 31.27699 * 13 4 3 15 15 H 1.09000 * 111.86133 * 218.42904 * 14 13 4 16 16 C 1.53780 * 109.34593 * 93.95365 * 14 13 4 17 17 N 1.47217 * 106.37857 * 227.55193 * 16 14 13 18 18 C 1.34773 * 126.70156 * 211.27014 * 17 16 14 19 19 O 1.21285 * 119.99648 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00053 * 0.03245 * 18 17 16 21 21 C 1.53003 * 109.46869 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.46874 * 179.97438 * 21 20 18 23 23 C 1.41376 * 126.58376 * 270.01966 * 22 21 20 24 24 C 1.34516 * 106.84089 * 179.97438 * 23 22 21 25 25 O 1.34298 * 108.42070 * 0.02562 * 24 23 22 26 26 C 1.34305 * 109.47744 * 359.97438 * 25 24 23 27 27 C 1.47214 * 106.59283 * 31.53575 * 17 16 14 28 28 H 1.09000 * 109.47317 * 302.87962 * 1 2 3 29 29 H 1.08993 * 109.47482 * 62.88395 * 1 2 3 30 30 H 1.09004 * 109.47081 * 182.88365 * 1 2 3 31 31 H 1.08997 * 109.64723 * 20.56872 * 3 2 1 32 32 H 1.09008 * 110.22631 * 259.26327 * 3 2 1 33 33 H 0.97005 * 119.99950 * 179.97438 * 8 7 5 34 34 H 1.08997 * 110.07391 * 272.05207 * 13 4 3 35 35 H 1.08996 * 110.07429 * 150.50475 * 13 4 3 36 36 H 1.09003 * 110.07267 * 108.32655 * 16 14 13 37 37 H 1.08994 * 110.07575 * 346.78454 * 16 14 13 38 38 H 1.08996 * 109.47528 * 59.99976 * 20 18 17 39 39 H 1.09004 * 109.46991 * 299.99403 * 20 18 17 40 40 H 1.09003 * 109.47343 * 60.00222 * 21 20 18 41 41 H 1.08996 * 109.47389 * 299.99478 * 21 20 18 42 42 H 1.08003 * 126.57866 * 359.94100 * 23 22 21 43 43 H 1.08001 * 125.78815 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.78869 * 180.26180 * 26 25 24 45 45 H 1.09008 * 110.07184 * 87.69796 * 27 17 16 46 46 H 1.08997 * 110.07421 * 209.23352 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1300 1.4397 0.0000 4 7 3.2862 1.4162 0.9109 5 6 4.4222 2.1744 0.8111 6 1 4.5319 2.8786 -0.0003 7 6 5.4325 2.0382 1.7533 8 7 5.2984 1.1807 2.7427 9 14 6.9818 3.0730 1.6177 10 1 6.6228 4.5125 1.6821 11 1 7.8988 2.7404 2.7373 12 1 7.6556 2.7882 0.3253 13 6 2.9830 0.4181 1.9497 14 6 2.1092 -0.6546 1.2783 15 1 1.3242 -1.0136 1.9440 16 6 3.0040 -1.8007 0.7778 17 7 2.5853 -2.0804 -0.6056 18 6 2.6203 -3.2732 -1.2321 19 8 2.2435 -3.3657 -2.3812 20 6 3.1274 -4.4918 -0.5049 21 6 3.0614 -5.7049 -1.4349 22 6 3.5691 -6.9234 -0.7078 23 6 4.9054 -7.3830 -0.6646 24 6 4.9107 -8.4951 0.0921 25 8 3.6556 -8.7324 0.5066 26 6 2.8377 -7.7823 0.0247 27 6 2.1270 -0.8016 -1.1728 28 1 -0.3634 0.5579 0.8630 29 1 -0.3634 0.4684 -0.9146 30 1 -0.3633 -1.0264 0.0517 31 1 1.3839 2.1477 0.3606 32 1 2.4509 1.7142 -1.0050 33 1 6.0046 1.0853 3.4009 34 1 2.4378 0.8853 2.7697 35 1 3.9057 -0.0289 2.3197 36 1 2.8607 -2.6854 1.3982 37 1 4.0499 -1.4947 0.7975 38 1 2.5089 -4.6741 0.3739 39 1 4.1594 -4.3267 -0.1951 40 1 3.6797 -5.5229 -2.3140 41 1 2.0293 -5.8698 -1.7443 42 1 5.7581 -6.9286 -1.1471 43 1 5.7773 -9.0958 0.3258 44 1 1.7739 -7.7167 0.1994 45 1 2.9684 -0.2626 -1.6083 46 1 1.3642 -0.9805 -1.9306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091585928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:33 Heat of formation + Delta-G solvation = 4.015466 kcal Electronic energy + Delta-G solvation = -26995.525309 eV Core-core repulsion = 23273.353802 eV Total energy + Delta-G solvation = -3722.171507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.68689 -40.14713 -38.37444 -35.03025 -34.78361 -32.86459 -31.54451 -30.80098 -29.98195 -29.32926 -26.74407 -25.85847 -25.15246 -24.07832 -22.39168 -21.74121 -20.33169 -20.14912 -19.02659 -18.52063 -17.66640 -16.85243 -16.41360 -16.08747 -15.83818 -15.21814 -14.86611 -14.78726 -14.52168 -14.11903 -13.61941 -13.34594 -13.23363 -12.94576 -12.81777 -12.57746 -12.40718 -12.28961 -12.24489 -11.94065 -11.67346 -11.61362 -11.32126 -10.99405 -10.93333 -10.85404 -10.75081 -10.18298 -10.15934 -9.92677 -9.84361 -9.79573 -9.60524 -9.51968 -8.76037 -8.68365 -8.30007 -6.93964 -5.71282 -3.15654 1.61190 2.42782 2.87040 2.99322 3.33423 3.36848 3.41462 3.42034 4.43022 4.56151 4.64973 4.79971 4.92614 5.00154 5.05985 5.14606 5.21520 5.24178 5.42927 5.52142 5.54582 5.60245 5.64313 5.68977 5.71212 5.79838 5.92210 5.94312 6.04271 6.05892 6.12871 6.15991 6.27797 6.31431 6.34899 6.37308 6.44816 6.52162 6.72971 6.75791 6.87844 6.96187 7.34401 7.54780 7.75264 7.89570 8.31968 8.40967 9.14416 9.74989 10.42297 11.30139 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003289 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.508371 B = 8511.761866 C = 9772.207040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.091 4.091 3 C 0.145 3.855 4 N -0.594 5.594 5 C -0.218 4.218 6 H 0.078 0.922 7 C -0.010 4.010 8 N -0.922 5.922 9 Si 0.915 3.085 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.141 3.859 14 C -0.116 4.116 15 H 0.076 0.924 16 C 0.112 3.888 17 N -0.612 5.612 18 C 0.528 3.472 19 O -0.557 6.557 20 C -0.129 4.129 21 C -0.033 4.033 22 C -0.175 4.175 23 C -0.207 4.207 24 C -0.045 4.045 25 O -0.180 6.180 26 C -0.042 4.042 27 C 0.125 3.875 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.043 0.957 33 H 0.254 0.746 34 H 0.009 0.991 35 H 0.128 0.872 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.201 0.799 44 H 0.201 0.799 45 H 0.070 0.930 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 -15.157 -3.216 16.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.346 4.346 6 H 0.096 0.904 7 C -0.206 4.206 8 N -0.571 5.571 9 Si 0.746 3.254 10 H -0.212 1.212 11 H -0.215 1.215 12 H -0.212 1.212 13 C 0.015 3.985 14 C -0.136 4.136 15 H 0.094 0.906 16 C -0.011 4.011 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.436 6.436 20 C -0.169 4.169 21 C -0.071 4.071 22 C -0.176 4.176 23 C -0.227 4.227 24 C -0.112 4.112 25 O -0.075 6.075 26 C -0.110 4.110 27 C 0.002 3.998 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.027 0.973 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.166 0.834 43 H 0.218 0.782 44 H 0.218 0.782 45 H 0.089 0.911 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.544 -15.466 -3.568 16.813 hybrid contribution 0.916 0.792 0.002 1.211 sum -4.628 -14.674 -3.565 15.794 Atomic orbital electron populations 1.21597 0.93647 1.01079 1.01618 1.22609 0.94712 0.97459 0.94540 1.21758 0.90080 0.91810 0.94536 1.44458 1.15405 1.44729 1.27188 1.19046 0.92286 1.14572 1.08741 0.90403 1.24748 0.98774 0.99819 0.97209 1.69560 1.33460 1.38307 1.15784 0.86134 0.82608 0.79630 0.77035 1.21205 1.21525 1.21175 1.21992 0.99195 0.87803 0.89505 1.23043 0.97635 0.96647 0.96320 0.90577 1.22326 1.00160 0.97789 0.80827 1.48662 1.63065 1.07713 1.14967 1.20269 0.78206 0.83324 0.86522 1.90666 1.49743 1.85402 1.17772 1.21609 1.03449 0.92326 0.99541 1.19693 1.02132 0.88609 0.96700 1.20525 0.93752 0.99796 1.03576 1.21813 0.97857 0.98455 1.04536 1.24011 0.85880 1.00093 1.01262 1.84059 1.17862 1.45596 1.60011 1.23893 0.96493 0.90019 1.00589 1.22088 0.98815 0.83167 0.95680 0.92280 0.92774 0.93099 0.96123 0.93824 0.93550 0.97274 0.85496 0.91646 0.89914 0.89079 0.88787 0.90208 0.90410 0.83441 0.78249 0.78241 0.91136 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.70 8.59 37.16 0.32 -1.38 16 2 C -0.09 -1.53 1.15 -151.37 -0.17 -1.70 16 3 C 0.15 2.89 6.29 -2.07 -0.01 2.88 16 4 N -0.59 -14.32 3.39 -169.75 -0.58 -14.90 16 5 C -0.22 -5.80 10.34 -15.05 -0.16 -5.96 16 6 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 7 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 8 N -0.92 -25.35 10.08 55.49 0.56 -24.79 16 9 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 C 0.14 3.16 5.56 -3.25 -0.02 3.14 16 14 C -0.12 -2.04 3.62 -88.83 -0.32 -2.36 16 15 H 0.08 1.21 7.88 -51.93 -0.41 0.80 16 16 C 0.11 1.85 6.29 -3.24 -0.02 1.83 16 17 N -0.61 -10.19 3.32 -171.38 -0.57 -10.76 16 18 C 0.53 8.50 7.88 -10.99 -0.09 8.41 16 19 O -0.56 -10.55 16.21 5.55 0.09 -10.46 16 20 C -0.13 -1.60 4.66 -27.88 -0.13 -1.73 16 21 C -0.03 -0.39 5.02 -27.88 -0.14 -0.53 16 22 C -0.18 -1.89 5.42 -104.74 -0.57 -2.46 16 23 C -0.21 -2.11 10.87 -39.70 -0.43 -2.54 16 24 C -0.05 -0.40 12.09 29.42 0.36 -0.05 16 25 O -0.18 -1.85 10.65 5.72 0.06 -1.79 16 26 C -0.04 -0.41 12.01 29.42 0.35 -0.06 16 27 C 0.12 2.16 6.18 -3.08 -0.02 2.14 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 32 H 0.04 0.85 7.56 -51.92 -0.39 0.46 16 33 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 34 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.13 3.17 4.82 -51.93 -0.25 2.92 16 36 H 0.07 0.91 7.31 -51.93 -0.38 0.53 16 37 H 0.08 1.60 7.41 -51.93 -0.38 1.22 16 38 H 0.09 0.99 7.86 -51.93 -0.41 0.58 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 43 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.07 1.34 7.42 -51.92 -0.39 0.95 16 46 H 0.07 1.17 7.64 -51.93 -0.40 0.77 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -30.87 369.05 -8.23 -39.10 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.19 Total: 2.42 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.15 Total: -0.74 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.59 Total: -50.45 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.15 Total: -12.25 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.87 -8.23 -39.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091585928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.116 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds