Wall clock time and date at job start Tue Mar 31 2020 12:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.55969 * 112.62468 * 2 1 4 4 N 1.47209 * 106.70322 * 139.75876 * 3 2 1 5 5 C 1.36942 * 126.69970 * 149.02546 * 4 3 2 6 6 H 1.07997 * 120.00072 * 0.04834 * 5 4 3 7 7 C 1.38820 * 119.99628 * 180.02562 * 5 4 3 8 8 N 1.31613 * 120.00188 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99696 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47322 * 59.99675 * 9 7 5 11 11 H 1.48498 * 109.47164 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46860 * 299.99848 * 9 7 5 13 13 C 1.47216 * 106.59912 * 329.04386 * 4 3 2 14 14 C 1.53780 * 106.37280 * 31.27699 * 13 4 3 15 15 H 1.09000 * 111.86133 * 218.42904 * 14 13 4 16 16 C 1.53780 * 109.34593 * 93.95365 * 14 13 4 17 17 N 1.47217 * 106.37857 * 227.55193 * 16 14 13 18 18 C 1.34773 * 126.70156 * 211.27014 * 17 16 14 19 19 O 1.21285 * 119.99648 * 180.02562 * 18 17 16 20 20 C 1.50701 * 120.00053 * 0.03245 * 18 17 16 21 21 C 1.53003 * 109.46869 * 179.97438 * 20 18 17 22 22 C 1.50703 * 109.46874 * 179.97438 * 21 20 18 23 23 C 1.41376 * 126.58376 * 270.01966 * 22 21 20 24 24 C 1.34516 * 106.84089 * 179.97438 * 23 22 21 25 25 O 1.34298 * 108.42070 * 0.02562 * 24 23 22 26 26 C 1.34305 * 109.47744 * 359.97438 * 25 24 23 27 27 C 1.47214 * 106.59283 * 31.53575 * 17 16 14 28 28 H 1.09000 * 109.47317 * 302.87962 * 1 2 3 29 29 H 1.08993 * 109.47482 * 62.88395 * 1 2 3 30 30 H 1.09004 * 109.47081 * 182.88365 * 1 2 3 31 31 H 1.08997 * 109.64723 * 20.56872 * 3 2 1 32 32 H 1.09008 * 110.22631 * 259.26327 * 3 2 1 33 33 H 0.97005 * 119.99950 * 179.97438 * 8 7 5 34 34 H 1.08997 * 110.07391 * 272.05207 * 13 4 3 35 35 H 1.08996 * 110.07429 * 150.50475 * 13 4 3 36 36 H 1.09003 * 110.07267 * 108.32655 * 16 14 13 37 37 H 1.08994 * 110.07575 * 346.78454 * 16 14 13 38 38 H 1.08996 * 109.47528 * 59.99976 * 20 18 17 39 39 H 1.09004 * 109.46991 * 299.99403 * 20 18 17 40 40 H 1.09003 * 109.47343 * 60.00222 * 21 20 18 41 41 H 1.08996 * 109.47389 * 299.99478 * 21 20 18 42 42 H 1.08003 * 126.57866 * 359.94100 * 23 22 21 43 43 H 1.08001 * 125.78815 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.78869 * 180.26180 * 26 25 24 45 45 H 1.09008 * 110.07184 * 87.69796 * 27 17 16 46 46 H 1.08997 * 110.07421 * 209.23352 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1300 1.4397 0.0000 4 7 3.2862 1.4162 0.9109 5 6 4.4222 2.1744 0.8111 6 1 4.5319 2.8786 -0.0003 7 6 5.4325 2.0382 1.7533 8 7 5.2984 1.1807 2.7427 9 14 6.9818 3.0730 1.6177 10 1 6.6228 4.5125 1.6821 11 1 7.8988 2.7404 2.7373 12 1 7.6556 2.7882 0.3253 13 6 2.9830 0.4181 1.9497 14 6 2.1092 -0.6546 1.2783 15 1 1.3242 -1.0136 1.9440 16 6 3.0040 -1.8007 0.7778 17 7 2.5853 -2.0804 -0.6056 18 6 2.6203 -3.2732 -1.2321 19 8 2.2435 -3.3657 -2.3812 20 6 3.1274 -4.4918 -0.5049 21 6 3.0614 -5.7049 -1.4349 22 6 3.5691 -6.9234 -0.7078 23 6 4.9054 -7.3830 -0.6646 24 6 4.9107 -8.4951 0.0921 25 8 3.6556 -8.7324 0.5066 26 6 2.8377 -7.7823 0.0247 27 6 2.1270 -0.8016 -1.1728 28 1 -0.3634 0.5579 0.8630 29 1 -0.3634 0.4684 -0.9146 30 1 -0.3633 -1.0264 0.0517 31 1 1.3839 2.1477 0.3606 32 1 2.4509 1.7142 -1.0050 33 1 6.0046 1.0853 3.4009 34 1 2.4378 0.8853 2.7697 35 1 3.9057 -0.0289 2.3197 36 1 2.8607 -2.6854 1.3982 37 1 4.0499 -1.4947 0.7975 38 1 2.5089 -4.6741 0.3739 39 1 4.1594 -4.3267 -0.1951 40 1 3.6797 -5.5229 -2.3140 41 1 2.0293 -5.8698 -1.7443 42 1 5.7581 -6.9286 -1.1471 43 1 5.7773 -9.0958 0.3258 44 1 1.7739 -7.7167 0.1994 45 1 2.9684 -0.2626 -1.6083 46 1 1.3642 -0.9805 -1.9306 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091585928.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:31 Heat of formation + Delta-G solvation = -13.193570 kcal Electronic energy + Delta-G solvation = -26996.271549 eV Core-core repulsion = 23273.353802 eV Total energy + Delta-G solvation = -3722.917747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.41033 -41.54424 -39.78484 -36.57346 -35.78864 -34.48517 -32.67139 -32.19943 -31.60036 -30.13969 -27.94833 -27.59184 -26.71682 -25.23540 -23.91638 -22.44429 -21.83999 -21.10478 -20.39103 -19.91078 -18.73177 -18.45509 -17.64536 -17.13977 -16.89819 -16.69014 -16.42420 -16.02719 -15.59271 -15.46172 -15.22833 -14.73847 -14.49748 -14.18597 -13.87673 -13.65154 -13.61965 -13.47337 -13.30514 -13.20833 -13.14671 -12.94745 -12.83423 -12.70386 -12.50759 -12.35700 -11.96237 -11.89165 -11.83107 -11.50104 -11.33439 -11.25956 -11.00371 -10.72288 -10.52673 -9.69654 -9.40268 -8.87889 -7.73396 -5.19675 0.91016 1.48516 1.49844 1.56129 1.58706 1.64913 2.06442 2.35965 2.50496 3.32066 3.36730 3.58656 3.73325 3.78295 3.91721 3.95956 4.03034 4.19276 4.22417 4.28010 4.32060 4.36729 4.38861 4.57073 4.65154 4.72185 4.80752 4.82393 4.85262 4.86790 4.90408 5.02439 5.04971 5.12041 5.17782 5.24019 5.26574 5.30578 5.37051 5.42562 5.52209 5.60238 5.61835 5.86270 6.24499 6.40479 6.57990 7.10734 7.14106 7.79669 8.46772 9.25121 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.003289 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.508371 B = 8511.761866 C = 9772.207040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.078 4.078 3 C 0.140 3.860 4 N -0.616 5.616 5 C -0.234 4.234 6 H 0.077 0.923 7 C -0.059 4.059 8 N -0.941 5.941 9 Si 0.974 3.026 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.145 3.855 14 C -0.107 4.107 15 H 0.104 0.896 16 C 0.121 3.879 17 N -0.613 5.613 18 C 0.526 3.474 19 O -0.586 6.586 20 C -0.120 4.120 21 C -0.024 4.024 22 C -0.195 4.195 23 C -0.232 4.232 24 C -0.040 4.040 25 O -0.189 6.189 26 C -0.040 4.040 27 C 0.126 3.874 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.248 0.752 34 H -0.013 1.013 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.151 0.849 43 H 0.233 0.767 44 H 0.227 0.773 45 H 0.044 0.956 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.560 -16.684 -2.975 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.080 4.080 3 C 0.014 3.986 4 N -0.340 5.340 5 C -0.363 4.363 6 H 0.095 0.905 7 C -0.252 4.252 8 N -0.591 5.591 9 Si 0.803 3.197 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.019 3.981 14 C -0.127 4.127 15 H 0.122 0.878 16 C -0.002 4.002 17 N -0.345 5.345 18 C 0.317 3.683 19 O -0.467 6.467 20 C -0.159 4.159 21 C -0.062 4.062 22 C -0.196 4.196 23 C -0.251 4.251 24 C -0.107 4.107 25 O -0.085 6.085 26 C -0.107 4.107 27 C 0.003 3.997 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.005 0.995 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.169 0.831 43 H 0.249 0.751 44 H 0.243 0.757 45 H 0.063 0.937 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.611 -16.997 -3.339 18.540 hybrid contribution 1.251 1.291 -0.119 1.802 sum -5.360 -15.706 -3.458 16.952 Atomic orbital electron populations 1.21565 0.90698 1.02304 1.02672 1.22538 0.96739 0.94906 0.93799 1.21923 0.89033 0.94130 0.93543 1.44693 1.15914 1.44980 1.28390 1.19343 0.93444 1.14864 1.08647 0.90547 1.25462 1.01318 1.01166 0.97269 1.69798 1.33825 1.39329 1.16171 0.85218 0.79404 0.78318 0.76763 1.20775 1.21750 1.20827 1.21798 0.98605 0.88479 0.89233 1.22936 0.97602 0.95482 0.96691 0.87767 1.22146 0.97956 0.98794 0.81309 1.48714 1.63062 1.07743 1.14936 1.20941 0.77261 0.83846 0.86226 1.90652 1.51034 1.85850 1.19191 1.21622 1.03714 0.90618 0.99978 1.19543 1.01854 0.88789 0.96040 1.20527 0.94398 1.00056 1.04635 1.22037 0.98002 0.99433 1.05601 1.24630 0.86244 0.99796 1.00054 1.84079 1.18453 1.45814 1.60150 1.24387 0.97520 0.89214 0.99604 1.21983 0.98075 0.83559 0.96039 0.91675 0.91440 0.91665 0.95631 0.94132 0.94159 0.99480 0.88129 0.88172 0.93282 0.86687 0.88535 0.91873 0.90349 0.83092 0.75098 0.75662 0.93739 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 8.59 71.98 0.62 -2.24 16 2 C -0.08 -2.50 1.15 -50.15 -0.06 -2.56 16 3 C 0.14 5.55 6.29 87.27 0.55 6.10 16 4 N -0.62 -30.26 3.39 -690.96 -2.35 -32.61 16 5 C -0.23 -12.72 10.34 84.03 0.87 -11.85 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.06 -3.24 5.49 84.86 0.47 -2.77 16 8 N -0.94 -53.04 10.08 21.65 0.22 -52.82 16 9 Si 0.97 44.59 29.55 68.60 2.03 46.61 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 C 0.14 6.57 5.56 86.51 0.48 7.05 16 14 C -0.11 -3.61 3.62 -9.63 -0.03 -3.65 16 15 H 0.10 2.99 7.88 -2.39 -0.02 2.97 16 16 C 0.12 3.85 6.29 86.51 0.54 4.39 16 17 N -0.61 -19.65 3.32 -814.51 -2.70 -22.35 16 18 C 0.53 16.26 7.88 87.66 0.69 16.95 16 19 O -0.59 -21.75 16.21 -3.05 -0.05 -21.80 16 20 C -0.12 -2.73 4.66 29.85 0.14 -2.59 16 21 C -0.02 -0.53 5.02 29.85 0.15 -0.38 16 22 C -0.19 -3.89 5.42 -19.94 -0.11 -4.00 16 23 C -0.23 -4.41 10.87 22.19 0.24 -4.17 16 24 C -0.04 -0.64 12.09 66.97 0.81 0.17 16 25 O -0.19 -3.47 10.65 -2.45 -0.03 -3.50 16 26 C -0.04 -0.68 12.01 66.97 0.80 0.12 16 27 C 0.13 4.27 6.18 86.61 0.54 4.80 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.03 1.00 7.91 -2.39 -0.02 0.98 16 32 H 0.04 1.61 7.56 -2.38 -0.02 1.59 16 33 H 0.25 13.67 8.31 -92.70 -0.77 12.90 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.10 5.18 4.82 -2.39 -0.01 5.17 16 36 H 0.10 2.50 7.31 -2.39 -0.02 2.49 16 37 H 0.05 1.92 7.41 -2.39 -0.02 1.91 16 38 H 0.12 2.11 7.86 -2.39 -0.02 2.09 16 39 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.08 1.69 8.10 -2.39 -0.02 1.68 16 42 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 43 H 0.23 1.81 8.06 -2.91 -0.02 1.78 16 44 H 0.23 2.34 8.06 -2.91 -0.02 2.31 16 45 H 0.04 1.72 7.42 -2.38 -0.02 1.70 16 46 H 0.08 2.50 7.64 -2.39 -0.02 2.48 16 Total: -1.00 -68.05 369.05 4.78 -63.27 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.96 Total: 17.82 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.70 Total: 5.37 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.83 Total: -107.78 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.08 Total: -25.30 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.05 4.78 -63.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091585928.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.074 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds