Wall clock time and date at job start Tue Mar 31 2020 12:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99797 * 2 1 4 4 H 1.48500 * 109.46591 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46982 * 299.99947 * 3 2 1 6 6 H 1.48498 * 109.47344 * 60.00076 * 3 2 1 7 7 C 1.38809 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00176 * 181.32910 * 7 2 1 9 9 N 1.36939 * 119.99988 * 1.33351 * 7 2 1 10 10 C 1.46492 * 120.00334 * 187.29598 * 9 7 2 11 11 H 1.08998 * 109.32166 * 53.33381 * 10 9 7 12 12 C 1.54076 * 109.05943 * 294.29095 * 10 9 7 13 13 C 1.53972 * 108.10398 * 294.47392 * 12 10 9 14 14 H 1.09005 * 112.99076 * 168.82399 * 13 12 10 15 15 C 1.55420 * 107.20267 * 294.21051 * 13 12 10 16 16 C 1.55415 * 100.24797 * 73.50971 * 15 13 12 17 17 H 1.09006 * 112.48087 * 162.86314 * 16 15 13 18 18 C 1.52985 * 109.32707 * 172.97952 * 10 9 7 19 19 N 1.47788 * 104.13779 * 40.82928 * 16 15 13 20 20 C 1.34770 * 125.86194 * 153.48125 * 19 16 15 21 21 O 1.21282 * 120.00017 * 3.27911 * 20 19 16 22 22 C 1.50706 * 120.00369 * 183.27386 * 20 19 16 23 23 C 1.52995 * 109.47389 * 187.35838 * 22 20 19 24 24 C 1.50692 * 109.47358 * 180.02562 * 23 22 20 25 25 C 1.34519 * 125.78898 * 89.99922 * 24 23 22 26 26 C 1.41382 * 106.83867 * 179.73933 * 25 24 23 27 27 C 1.34518 * 106.84508 * 0.02562 * 26 25 24 28 28 O 1.34306 * 108.41826 * 359.97438 * 27 26 25 29 29 C 1.47083 * 108.28027 * 333.21951 * 19 16 15 30 30 H 0.97006 * 119.99990 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99732 * 7.29341 * 9 7 2 32 32 H 1.08997 * 109.32820 * 175.24615 * 12 10 9 33 33 H 1.09002 * 110.53915 * 54.40716 * 12 10 9 34 34 H 1.09002 * 111.23884 * 191.43980 * 15 13 12 35 35 H 1.09001 * 111.24149 * 315.84708 * 15 13 12 36 36 H 1.08991 * 109.53346 * 305.28791 * 18 10 9 37 37 H 1.09006 * 109.53240 * 185.06394 * 18 10 9 38 38 H 1.09003 * 109.46571 * 67.35577 * 22 20 19 39 39 H 1.08995 * 109.46686 * 307.35955 * 22 20 19 40 40 H 1.08998 * 109.47297 * 59.99832 * 23 22 20 41 41 H 1.08999 * 109.46914 * 300.00367 * 23 22 20 42 42 H 1.07995 * 126.57919 * 359.70073 * 25 24 23 43 43 H 1.08001 * 126.57798 * 180.02562 * 26 25 24 44 44 H 1.07993 * 125.78992 * 180.02562 * 27 26 25 45 45 H 1.09004 * 109.97719 * 120.70128 * 29 19 16 46 46 H 1.09007 * 109.97450 * 241.97674 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0900 -1.2022 0.0222 9 7 1.3259 -2.3879 -0.0265 10 6 2.0461 -3.6533 0.1350 11 1 2.6451 -3.6137 1.0448 12 6 2.9818 -3.8572 -1.0720 13 6 2.1101 -4.0313 -2.3292 14 1 2.6842 -3.9879 -3.2548 15 6 1.3204 -5.3593 -2.1606 16 6 0.2791 -4.9278 -1.0906 17 1 -0.5671 -5.6126 -1.0325 18 6 1.0385 -4.7994 0.2416 19 7 -0.1230 -3.5677 -1.5060 20 6 -1.3040 -2.9768 -1.2369 21 8 -2.1248 -3.5471 -0.5499 22 6 -1.6047 -1.6074 -1.7896 23 6 -2.9162 -1.0932 -1.1927 24 6 -3.2172 0.2759 -1.7458 25 6 -3.9273 0.5362 -2.8582 26 6 -3.9669 1.9424 -2.9991 27 6 -3.2781 2.4574 -1.9648 28 8 -2.8265 1.4433 -1.2088 29 6 0.9893 -2.9673 -2.2580 30 1 -0.4850 0.8401 -0.0004 31 1 0.3640 -2.3900 -0.1526 32 1 3.5814 -4.7540 -0.9162 33 1 3.6367 -2.9950 -1.1982 34 1 0.8359 -5.6516 -3.0923 35 1 1.9630 -6.1561 -1.7861 36 1 0.3323 -4.5902 1.0450 37 1 1.5658 -5.7300 0.4516 38 1 -1.6972 -1.6656 -2.8741 39 1 -0.7952 -0.9252 -1.5301 40 1 -2.8237 -1.0350 -0.1082 41 1 -3.7256 -1.7755 -1.4522 42 1 -4.3798 -0.1897 -3.5175 43 1 -4.4562 2.4969 -3.7863 44 1 -3.1165 3.5080 -1.7741 45 1 0.6603 -2.7051 -3.2636 46 1 1.3516 -2.0787 -1.7410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094856674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:49 Heat of formation + Delta-G solvation = 45.216854 kcal Electronic energy + Delta-G solvation = -29147.297628 eV Core-core repulsion = 25426.912746 eV Total energy + Delta-G solvation = -3720.384881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.03213 -40.87460 -37.81002 -34.28876 -33.33009 -32.69392 -32.15815 -31.14088 -30.59373 -28.36403 -27.48459 -25.10150 -24.02692 -23.59774 -21.35842 -21.25034 -21.06719 -19.82968 -18.91529 -18.17935 -17.41412 -16.83654 -16.21690 -15.50071 -15.27345 -14.81765 -14.77603 -14.38373 -13.79788 -13.66103 -13.26079 -13.04452 -12.93069 -12.42555 -12.41949 -12.35148 -12.17090 -12.04810 -11.81254 -11.73047 -11.44210 -11.34037 -11.25276 -11.10875 -10.86659 -10.67502 -10.34448 -10.21044 -10.14584 -9.91582 -9.71475 -9.47715 -9.46050 -9.00843 -8.61163 -7.94626 -7.68472 -6.65074 -5.85976 -3.18268 2.24475 3.02680 3.36793 3.43976 3.46370 3.48107 3.54035 3.81786 4.50426 4.89040 5.07035 5.18596 5.19470 5.36174 5.42340 5.46192 5.58229 5.72680 5.76194 5.78550 5.80988 5.83386 5.85769 5.94637 5.99967 6.07084 6.18056 6.20201 6.22880 6.32576 6.35016 6.40324 6.54905 6.58496 6.61324 6.73534 6.81223 6.83976 6.89044 7.00708 7.10875 7.36008 7.49189 7.66317 7.71434 8.33235 8.36260 8.99231 9.44827 9.99626 10.39679 11.31181 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.006109 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.357022 B = 4582.185691 C = 6102.425496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.904 3.096 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.725 5.725 10 C 0.172 3.828 11 H 0.034 0.966 12 C -0.127 4.127 13 C -0.093 4.093 14 H 0.083 0.917 15 C -0.129 4.129 16 C 0.134 3.866 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.598 5.598 20 C 0.545 3.455 21 O -0.569 6.569 22 C -0.160 4.160 23 C -0.014 4.014 24 C 0.030 3.970 25 C -0.237 4.237 26 C -0.218 4.218 27 C -0.056 4.056 28 O -0.156 6.156 29 C 0.067 3.933 30 H 0.265 0.735 31 H 0.394 0.606 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.170 0.830 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.194 0.806 45 H 0.029 0.971 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 -4.055 -6.737 7.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.735 3.265 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.062 3.938 11 H 0.051 0.949 12 C -0.167 4.167 13 C -0.112 4.112 14 H 0.101 0.899 15 C -0.167 4.167 16 C 0.030 3.970 17 H 0.105 0.895 18 C -0.172 4.172 19 N -0.333 5.333 20 C 0.337 3.663 21 O -0.450 6.450 22 C -0.199 4.199 23 C -0.051 4.051 24 C -0.022 4.022 25 C -0.257 4.257 26 C -0.238 4.238 27 C -0.124 4.124 28 O -0.050 6.050 29 C -0.055 4.055 30 H 0.076 0.924 31 H 0.237 0.763 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.186 0.814 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.158 0.842 43 H 0.157 0.843 44 H 0.211 0.789 45 H 0.047 0.953 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.067 -4.131 -6.035 7.391 hybrid contribution 0.082 1.005 -0.325 1.059 sum -0.985 -3.126 -6.360 7.155 Atomic orbital electron populations 1.69229 1.04590 1.26309 1.56377 1.24756 0.95638 0.97447 1.02861 0.86165 0.78731 0.84310 0.77286 1.20759 1.21806 1.21913 1.19348 0.91449 0.84260 1.42273 0.91002 1.43699 1.08685 0.99908 1.85225 1.20378 0.91953 0.86620 0.94856 0.94860 1.22445 0.97819 1.00403 0.96080 1.22453 0.96325 0.94034 0.98364 0.89861 1.23056 0.97589 0.97660 0.98370 1.22149 0.95776 0.84882 0.94166 0.89537 1.22235 0.98739 0.98762 0.97424 1.48635 1.14959 1.15110 1.54550 1.20276 0.79406 0.87123 0.79527 1.90603 1.47487 1.66553 1.40314 1.22301 1.02661 0.96090 0.98851 1.19707 0.97244 0.85902 1.02278 1.22611 0.97884 0.87113 0.94551 1.21485 1.07749 0.95934 1.00482 1.21683 1.06010 0.94664 1.01401 1.23916 1.01802 0.92933 0.93759 1.84167 1.60105 1.14082 1.46654 1.23354 0.85527 1.02290 0.94355 0.92443 0.76329 0.93358 0.91288 0.91718 0.90530 0.91638 0.91529 0.91378 0.81372 0.89083 0.90095 0.84168 0.84275 0.78947 0.95277 0.81655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -23.76 9.80 55.49 0.54 -23.22 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -5.96 7.73 -15.06 -0.12 -6.08 16 8 H 0.07 1.74 7.39 -52.49 -0.39 1.36 16 9 N -0.72 -16.48 2.79 -52.89 -0.15 -16.63 16 10 C 0.17 3.27 3.16 -67.38 -0.21 3.06 16 11 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 12 C -0.13 -2.06 5.27 -25.66 -0.14 -2.20 16 13 C -0.09 -1.42 4.27 -87.93 -0.38 -1.79 16 14 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.13 -1.77 6.21 -24.16 -0.15 -1.92 16 16 C 0.13 2.27 3.98 -65.49 -0.26 2.01 16 17 H 0.09 1.47 8.06 -51.93 -0.42 1.05 16 18 C -0.13 -2.30 5.42 -26.28 -0.14 -2.44 16 19 N -0.60 -11.58 1.73 -161.66 -0.28 -11.86 16 20 C 0.54 11.71 6.01 -10.99 -0.07 11.64 16 21 O -0.57 -13.49 16.26 5.56 0.09 -13.40 16 22 C -0.16 -3.26 4.72 -27.88 -0.13 -3.39 16 23 C -0.01 -0.27 5.07 -27.89 -0.14 -0.41 16 24 C 0.03 0.55 6.57 -35.63 -0.23 0.32 16 25 C -0.24 -3.91 10.81 -39.70 -0.43 -4.33 16 26 C -0.22 -3.28 10.91 -39.70 -0.43 -3.71 16 27 C -0.06 -0.88 12.09 29.42 0.36 -0.52 16 28 O -0.16 -3.02 10.58 5.69 0.06 -2.96 16 29 C 0.07 1.23 4.96 -2.83 -0.01 1.22 16 30 H 0.26 6.90 8.24 -40.82 -0.34 6.56 16 31 H 0.39 9.38 3.18 -40.82 -0.13 9.25 16 32 H 0.05 0.67 8.01 -51.93 -0.42 0.25 16 33 H 0.07 1.19 7.37 -51.93 -0.38 0.81 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.91 7.80 -51.93 -0.40 0.51 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.17 3.89 4.49 -51.93 -0.23 3.66 16 40 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 41 H 0.08 1.46 8.02 -51.93 -0.42 1.04 16 42 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 43 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.17 3.61 3.76 -60.38 -0.23 3.38 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -28.21 350.22 -8.85 -37.07 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: -6.79 Total: 18.88 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.58 Total: -8.92 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.12 Total: -51.70 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.15 Total: -16.35 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.21 -8.85 -37.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094856674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.282 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds