Wall clock time and date at job start Tue Mar 31 2020 12:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99797 * 2 1 4 4 H 1.48500 * 109.46591 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46982 * 299.99947 * 3 2 1 6 6 H 1.48498 * 109.47344 * 60.00076 * 3 2 1 7 7 C 1.38809 * 120.00093 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00176 * 181.32910 * 7 2 1 9 9 N 1.36939 * 119.99988 * 1.33351 * 7 2 1 10 10 C 1.46492 * 120.00334 * 187.29598 * 9 7 2 11 11 H 1.08998 * 109.32166 * 53.33381 * 10 9 7 12 12 C 1.54076 * 109.05943 * 294.29095 * 10 9 7 13 13 C 1.53972 * 108.10398 * 294.47392 * 12 10 9 14 14 H 1.09005 * 112.99076 * 168.82399 * 13 12 10 15 15 C 1.55420 * 107.20267 * 294.21051 * 13 12 10 16 16 C 1.55415 * 100.24797 * 73.50971 * 15 13 12 17 17 H 1.09006 * 112.48087 * 162.86314 * 16 15 13 18 18 C 1.52985 * 109.32707 * 172.97952 * 10 9 7 19 19 N 1.47788 * 104.13779 * 40.82928 * 16 15 13 20 20 C 1.34770 * 125.86194 * 153.48125 * 19 16 15 21 21 O 1.21282 * 120.00017 * 3.27911 * 20 19 16 22 22 C 1.50706 * 120.00369 * 183.27386 * 20 19 16 23 23 C 1.52995 * 109.47389 * 187.35838 * 22 20 19 24 24 C 1.50692 * 109.47358 * 180.02562 * 23 22 20 25 25 C 1.34519 * 125.78898 * 89.99922 * 24 23 22 26 26 C 1.41382 * 106.83867 * 179.73933 * 25 24 23 27 27 C 1.34518 * 106.84508 * 0.02562 * 26 25 24 28 28 O 1.34306 * 108.41826 * 359.97438 * 27 26 25 29 29 C 1.47083 * 108.28027 * 333.21951 * 19 16 15 30 30 H 0.97006 * 119.99990 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99732 * 7.29341 * 9 7 2 32 32 H 1.08997 * 109.32820 * 175.24615 * 12 10 9 33 33 H 1.09002 * 110.53915 * 54.40716 * 12 10 9 34 34 H 1.09002 * 111.23884 * 191.43980 * 15 13 12 35 35 H 1.09001 * 111.24149 * 315.84708 * 15 13 12 36 36 H 1.08991 * 109.53346 * 305.28791 * 18 10 9 37 37 H 1.09006 * 109.53240 * 185.06394 * 18 10 9 38 38 H 1.09003 * 109.46571 * 67.35577 * 22 20 19 39 39 H 1.08995 * 109.46686 * 307.35955 * 22 20 19 40 40 H 1.08998 * 109.47297 * 59.99832 * 23 22 20 41 41 H 1.08999 * 109.46914 * 300.00367 * 23 22 20 42 42 H 1.07995 * 126.57919 * 359.70073 * 25 24 23 43 43 H 1.08001 * 126.57798 * 180.02562 * 26 25 24 44 44 H 1.07993 * 125.78992 * 180.02562 * 27 26 25 45 45 H 1.09004 * 109.97719 * 120.70128 * 29 19 16 46 46 H 1.09007 * 109.97450 * 241.97674 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0900 -1.2022 0.0222 9 7 1.3259 -2.3879 -0.0265 10 6 2.0461 -3.6533 0.1350 11 1 2.6451 -3.6137 1.0448 12 6 2.9818 -3.8572 -1.0720 13 6 2.1101 -4.0313 -2.3292 14 1 2.6842 -3.9879 -3.2548 15 6 1.3204 -5.3593 -2.1606 16 6 0.2791 -4.9278 -1.0906 17 1 -0.5671 -5.6126 -1.0325 18 6 1.0385 -4.7994 0.2416 19 7 -0.1230 -3.5677 -1.5060 20 6 -1.3040 -2.9768 -1.2369 21 8 -2.1248 -3.5471 -0.5499 22 6 -1.6047 -1.6074 -1.7896 23 6 -2.9162 -1.0932 -1.1927 24 6 -3.2172 0.2759 -1.7458 25 6 -3.9273 0.5362 -2.8582 26 6 -3.9669 1.9424 -2.9991 27 6 -3.2781 2.4574 -1.9648 28 8 -2.8265 1.4433 -1.2088 29 6 0.9893 -2.9673 -2.2580 30 1 -0.4850 0.8401 -0.0004 31 1 0.3640 -2.3900 -0.1526 32 1 3.5814 -4.7540 -0.9162 33 1 3.6367 -2.9950 -1.1982 34 1 0.8359 -5.6516 -3.0923 35 1 1.9630 -6.1561 -1.7861 36 1 0.3323 -4.5902 1.0450 37 1 1.5658 -5.7300 0.4516 38 1 -1.6972 -1.6656 -2.8741 39 1 -0.7952 -0.9252 -1.5301 40 1 -2.8237 -1.0350 -0.1082 41 1 -3.7256 -1.7755 -1.4522 42 1 -4.3798 -0.1897 -3.5175 43 1 -4.4562 2.4969 -3.7863 44 1 -3.1165 3.5080 -1.7741 45 1 0.6603 -2.7051 -3.2636 46 1 1.3516 -2.0787 -1.7410 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094856674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:48 Heat of formation + Delta-G solvation = 31.088404 kcal Electronic energy + Delta-G solvation = -29147.910283 eV Core-core repulsion = 25426.912746 eV Total energy + Delta-G solvation = -3720.997537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.35393 -42.32901 -39.43291 -35.98685 -34.87929 -34.20887 -33.49156 -32.70549 -32.08175 -29.82592 -28.93591 -26.57523 -25.55326 -25.27418 -22.75152 -22.55295 -22.47835 -21.17593 -20.29355 -19.76087 -19.13237 -18.26791 -17.66378 -16.99817 -16.81454 -16.54307 -16.23782 -15.91298 -15.44607 -15.06685 -14.92259 -14.56115 -14.33067 -13.91230 -13.78627 -13.59471 -13.46105 -13.38916 -13.26459 -13.13074 -13.05076 -12.92494 -12.81511 -12.67702 -12.47569 -12.31886 -11.98135 -11.89879 -11.64005 -11.44670 -11.21799 -10.91513 -10.75653 -10.64498 -10.38832 -9.26606 -9.24996 -8.41596 -7.77226 -5.08667 0.92466 1.49638 1.53885 1.60145 1.76898 1.84192 2.20900 2.40404 2.62318 3.44012 3.60760 3.77774 3.87206 3.91632 4.16045 4.21544 4.23526 4.24463 4.30575 4.33924 4.40243 4.45552 4.50379 4.53497 4.69592 4.73238 4.82553 4.95787 5.00521 5.00745 5.03076 5.10952 5.15433 5.16657 5.30656 5.35617 5.43558 5.45232 5.50032 5.58797 5.72266 5.74920 5.79680 5.97629 6.40052 6.44074 6.76761 7.35690 7.50071 8.21395 8.51553 9.37356 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.006109 C = 0.004587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.357022 B = 4582.185691 C = 6102.425496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.058 4.058 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.308 1.308 7 C -0.235 4.235 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.160 3.840 11 H 0.019 0.981 12 C -0.118 4.118 13 C -0.084 4.084 14 H 0.114 0.886 15 C -0.109 4.109 16 C 0.121 3.879 17 H 0.085 0.915 18 C -0.126 4.126 19 N -0.596 5.596 20 C 0.535 3.465 21 O -0.603 6.603 22 C -0.153 4.153 23 C -0.002 4.002 24 C -0.006 4.006 25 C -0.227 4.227 26 C -0.217 4.217 27 C -0.063 4.063 28 O -0.189 6.189 29 C 0.061 3.939 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.028 0.972 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.148 0.852 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.161 0.839 43 H 0.174 0.826 44 H 0.227 0.773 45 H 0.036 0.964 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -5.245 -9.037 10.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.252 4.252 3 Si 0.785 3.215 4 H -0.198 1.198 5 H -0.223 1.223 6 H -0.236 1.236 7 C -0.366 4.366 8 H 0.090 0.910 9 N -0.386 5.386 10 C 0.052 3.948 11 H 0.037 0.963 12 C -0.157 4.157 13 C -0.103 4.103 14 H 0.132 0.868 15 C -0.147 4.147 16 C 0.018 3.982 17 H 0.103 0.897 18 C -0.165 4.165 19 N -0.328 5.328 20 C 0.327 3.673 21 O -0.486 6.486 22 C -0.193 4.193 23 C -0.039 4.039 24 C -0.057 4.057 25 C -0.246 4.246 26 C -0.235 4.235 27 C -0.131 4.131 28 O -0.085 6.085 29 C -0.061 4.061 30 H 0.065 0.935 31 H 0.228 0.772 32 H 0.102 0.898 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.047 0.953 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.165 0.835 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.179 0.821 43 H 0.192 0.808 44 H 0.243 0.757 45 H 0.054 0.946 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.165 -5.357 -8.352 9.924 hybrid contribution -0.274 1.386 0.418 1.474 sum -0.109 -3.971 -7.934 8.873 Atomic orbital electron populations 1.69399 1.05220 1.25790 1.57663 1.25279 0.96260 0.99495 1.04121 0.85377 0.78305 0.81757 0.76056 1.19782 1.22324 1.23600 1.19484 0.91441 0.85051 1.40664 0.90972 1.43893 1.08595 1.00810 1.85339 1.20653 0.92550 0.85708 0.95875 0.96290 1.22310 0.97160 1.01445 0.94801 1.22498 0.95147 0.93527 0.99123 0.86843 1.23038 0.96374 0.97461 0.97837 1.22439 0.96778 0.83708 0.95246 0.89730 1.22195 0.97880 0.99770 0.96622 1.48718 1.14293 1.16090 1.53724 1.20493 0.79998 0.87415 0.79362 1.90567 1.48805 1.67392 1.41830 1.22179 1.02273 0.95140 0.99691 1.19478 0.97229 0.87345 0.99874 1.22532 1.00317 0.86671 0.96157 1.21832 1.06058 0.97362 0.99398 1.22085 1.05556 0.94012 1.01875 1.24745 1.01126 0.93715 0.93470 1.84134 1.61182 1.15025 1.48125 1.23295 0.86415 1.02523 0.93899 0.93513 0.77180 0.89802 0.92731 0.90058 0.87241 0.95329 0.87553 0.89811 0.83507 0.92770 0.89198 0.82133 0.80840 0.75711 0.94582 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.63 9.80 21.65 0.21 -50.41 16 2 C -0.06 -3.01 5.50 84.86 0.47 -2.55 16 3 Si 0.95 43.87 29.55 68.60 2.03 45.89 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.31 -14.83 7.11 99.48 0.71 -14.12 16 7 C -0.24 -11.76 7.73 84.03 0.65 -11.11 16 8 H 0.07 3.53 7.39 -2.91 -0.02 3.51 16 9 N -0.74 -34.14 2.79 -321.26 -0.90 -35.04 16 10 C 0.16 5.98 3.16 45.35 0.14 6.13 16 11 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 12 C -0.12 -3.44 5.27 31.29 0.16 -3.27 16 13 C -0.08 -2.25 4.27 -9.05 -0.04 -2.29 16 14 H 0.11 2.46 8.14 -2.38 -0.02 2.44 16 15 C -0.11 -2.51 6.21 32.26 0.20 -2.31 16 16 C 0.12 3.89 3.98 45.87 0.18 4.08 16 17 H 0.08 2.76 8.06 -2.38 -0.02 2.74 16 18 C -0.13 -4.21 5.42 30.88 0.17 -4.04 16 19 N -0.60 -22.95 1.73 -783.78 -1.36 -24.30 16 20 C 0.54 23.76 6.01 87.66 0.53 24.29 16 21 O -0.60 -29.82 16.26 -3.04 -0.05 -29.87 16 22 C -0.15 -6.51 4.72 29.85 0.14 -6.37 16 23 C 0.00 -0.06 5.07 29.84 0.15 0.09 16 24 C -0.01 -0.25 6.57 24.83 0.16 -0.08 16 25 C -0.23 -7.28 10.81 22.19 0.24 -7.04 16 26 C -0.22 -6.07 10.91 22.19 0.24 -5.83 16 27 C -0.06 -1.94 12.09 66.97 0.81 -1.13 16 28 O -0.19 -7.56 10.58 -2.56 -0.03 -7.59 16 29 C 0.06 2.18 4.96 86.85 0.43 2.61 16 30 H 0.25 14.04 8.24 -92.70 -0.76 13.27 16 31 H 0.39 19.06 3.18 -92.70 -0.29 18.76 16 32 H 0.08 1.90 8.01 -2.39 -0.02 1.88 16 33 H 0.05 1.76 7.37 -2.39 -0.02 1.75 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 35 H 0.11 1.89 7.80 -2.39 -0.02 1.87 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.11 2.67 8.01 -2.38 -0.02 2.65 16 38 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.15 7.13 4.49 -2.39 -0.01 7.12 16 40 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.09 3.41 8.02 -2.39 -0.02 3.39 16 42 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 43 H 0.17 3.57 8.06 -2.91 -0.02 3.54 16 44 H 0.23 4.95 8.06 -2.91 -0.02 4.92 16 45 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.13 5.81 3.76 -19.07 -0.07 5.74 16 Total: -1.00 -65.39 350.22 5.19 -60.20 By element: Atomic # 1 Polarization: 49.33 SS G_CDS: 0.64 Total: 49.96 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 4.64 Total: -8.85 kcal Atomic # 7 Polarization: -107.71 SS G_CDS: -2.04 Total: -109.75 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.08 Total: -37.45 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -65.39 5.19 -60.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094856674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.288 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds