Wall clock time and date at job start Tue Mar 31 2020 12:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99994 * 2 1 4 4 H 1.48507 * 109.47021 * 269.99457 * 3 2 1 5 5 H 1.48503 * 109.47301 * 29.99091 * 3 2 1 6 6 H 1.48496 * 109.47450 * 149.99362 * 3 2 1 7 7 C 1.38813 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 187.06085 * 7 2 1 9 9 N 1.36931 * 120.00225 * 7.05905 * 7 2 1 10 10 C 1.46499 * 120.00387 * 189.28157 * 9 7 2 11 11 H 1.09004 * 109.17994 * 54.74476 * 10 9 7 12 12 C 1.53037 * 109.32227 * 295.19758 * 10 9 7 13 13 C 1.53973 * 108.82583 * 295.13865 * 12 10 9 14 14 H 1.09001 * 112.99014 * 168.09377 * 13 12 10 15 15 C 1.55425 * 106.41484 * 293.82342 * 13 12 10 16 16 C 1.55445 * 100.23487 * 73.19796 * 15 13 12 17 17 H 1.09004 * 113.04643 * 163.20993 * 16 15 13 18 18 C 1.52983 * 109.32797 * 174.30862 * 10 9 7 19 19 N 1.47786 * 104.11746 * 40.86201 * 16 15 13 20 20 C 1.34784 * 125.85631 * 153.44320 * 19 16 15 21 21 O 1.21284 * 119.99760 * 355.23504 * 20 19 16 22 22 C 1.50696 * 120.00310 * 175.50789 * 20 19 16 23 23 C 1.52999 * 109.47321 * 184.60642 * 22 20 19 24 24 C 1.50703 * 109.46997 * 180.02562 * 23 22 20 25 25 C 1.41383 * 126.57364 * 269.70943 * 24 23 22 26 26 C 1.34516 * 106.83699 * 179.83742 * 25 24 23 27 27 O 1.34301 * 108.41985 * 0.42588 * 26 25 24 28 28 C 1.34304 * 109.47752 * 359.72502 * 27 26 25 29 29 C 1.47076 * 108.29194 * 333.18130 * 19 16 15 30 30 H 0.96994 * 119.99915 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00032 * 9.28082 * 9 7 2 32 32 H 1.08997 * 109.57626 * 175.33726 * 12 10 9 33 33 H 1.08995 * 109.58068 * 54.94356 * 12 10 9 34 34 H 1.09001 * 111.23200 * 191.15297 * 15 13 12 35 35 H 1.08999 * 111.23625 * 315.59784 * 15 13 12 36 36 H 1.09001 * 109.53236 * 185.06429 * 18 10 9 37 37 H 1.08998 * 109.53470 * 305.28576 * 18 10 9 38 38 H 1.09001 * 109.46895 * 304.60796 * 22 20 19 39 39 H 1.09001 * 109.46997 * 64.60358 * 22 20 19 40 40 H 1.09003 * 109.46795 * 300.00177 * 23 22 20 41 41 H 1.08996 * 109.47070 * 60.00324 * 23 22 20 42 42 H 1.07992 * 126.58220 * 359.97438 * 25 24 23 43 43 H 1.08001 * 125.78946 * 180.12126 * 26 25 24 44 44 H 1.08002 * 125.79103 * 180.02562 * 28 27 26 45 45 H 1.09002 * 109.97934 * 120.71734 * 29 19 16 46 46 H 1.08996 * 109.98033 * 241.96304 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3334 -2.3836 -0.1447 10 6 2.0298 -3.6565 0.0579 11 1 2.4970 -3.6563 1.0428 12 6 3.1092 -3.8195 -1.0145 13 6 2.4291 -3.9276 -2.3917 14 1 3.1307 -3.8387 -3.2211 15 6 1.6292 -5.2602 -2.3831 16 6 0.4524 -4.8699 -1.4456 17 1 -0.3943 -5.5528 -1.5165 18 6 1.0213 -4.8040 -0.0238 19 7 0.1041 -3.4941 -1.8578 20 6 -1.1049 -2.9129 -1.7268 21 8 -2.0457 -3.5569 -1.3132 22 6 -1.2892 -1.4646 -2.1002 23 6 -2.7126 -1.0251 -1.7514 24 6 -2.8970 0.4231 -2.1253 25 6 -2.6557 1.5441 -1.2982 26 6 -2.9449 2.6363 -2.0282 27 8 -3.3552 2.2382 -3.2434 28 6 -3.3281 0.8970 -3.3080 29 6 1.3046 -2.8657 -2.4296 30 1 -0.4850 0.8400 -0.0004 31 1 0.3928 -2.3778 -0.3817 32 1 3.6844 -4.7245 -0.8192 33 1 3.7712 -2.9537 -1.0010 34 1 1.2754 -5.5146 -3.3822 35 1 2.2189 -6.0718 -1.9569 36 1 1.5186 -5.7440 0.2151 37 1 0.2115 -4.6286 0.6843 38 1 -0.5747 -0.8535 -1.5487 39 1 -1.1228 -1.3413 -3.1704 40 1 -3.4270 -1.6363 -2.3029 41 1 -2.8789 -1.1483 -0.6812 42 1 -2.3044 1.5269 -0.2772 43 1 -2.8658 3.6597 -1.6922 44 1 -3.6051 0.3002 -4.1645 45 1 1.1123 -2.5636 -3.4591 46 1 1.5903 -1.9984 -1.8344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094894444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:00 Heat of formation + Delta-G solvation = 44.852797 kcal Electronic energy + Delta-G solvation = -29173.096117 eV Core-core repulsion = 25452.695449 eV Total energy + Delta-G solvation = -3720.400668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02083 -40.90134 -37.78876 -34.49556 -33.92847 -32.75951 -31.18599 -30.91499 -30.37504 -28.62229 -27.61278 -25.10971 -24.14381 -23.65508 -21.37605 -21.08851 -21.02533 -19.64694 -18.84629 -18.18472 -17.42142 -16.83139 -16.23307 -15.45812 -15.26646 -14.90851 -14.71344 -14.29491 -14.13274 -13.82544 -13.34396 -13.06302 -12.94372 -12.54021 -12.43312 -12.17515 -12.07651 -11.82308 -11.80968 -11.62478 -11.41561 -11.34147 -11.16764 -11.12005 -10.86036 -10.68991 -10.33610 -10.27420 -10.00847 -9.94661 -9.72355 -9.45511 -9.13955 -8.85245 -8.56325 -8.02817 -7.66883 -6.68546 -5.90830 -3.24394 2.23708 3.16990 3.32882 3.40005 3.41427 3.54332 3.59842 3.83988 4.45042 4.90471 5.06916 5.19047 5.24932 5.29283 5.44157 5.59474 5.61925 5.70746 5.76285 5.79370 5.84146 5.87647 6.00254 6.03139 6.06653 6.16673 6.19748 6.31794 6.33789 6.39178 6.43957 6.53705 6.59632 6.60596 6.69222 6.79675 6.83341 6.88824 6.93827 7.10902 7.17547 7.44667 7.51821 7.61042 7.73858 8.32233 8.37876 9.05321 9.37875 9.93828 10.34788 11.23264 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.006078 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.881843 B = 4605.417156 C = 6061.086647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.016 4.016 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.724 5.724 10 C 0.171 3.829 11 H 0.034 0.966 12 C -0.128 4.128 13 C -0.093 4.093 14 H 0.085 0.915 15 C -0.127 4.127 16 C 0.133 3.867 17 H 0.086 0.914 18 C -0.135 4.135 19 N -0.599 5.599 20 C 0.539 3.461 21 O -0.573 6.573 22 C -0.176 4.176 23 C -0.019 4.019 24 C -0.147 4.147 25 C -0.181 4.181 26 C -0.066 4.066 27 O -0.187 6.187 28 C -0.066 4.066 29 C 0.069 3.931 30 H 0.263 0.737 31 H 0.393 0.607 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.185 0.815 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.153 0.847 43 H 0.195 0.805 44 H 0.194 0.806 45 H 0.028 0.972 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.676 -3.269 -5.826 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.366 4.366 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.061 3.939 11 H 0.052 0.948 12 C -0.167 4.167 13 C -0.112 4.112 14 H 0.103 0.897 15 C -0.166 4.166 16 C 0.029 3.971 17 H 0.104 0.896 18 C -0.174 4.174 19 N -0.334 5.334 20 C 0.331 3.669 21 O -0.453 6.453 22 C -0.215 4.215 23 C -0.057 4.057 24 C -0.149 4.149 25 C -0.201 4.201 26 C -0.133 4.133 27 O -0.083 6.083 28 C -0.133 4.133 29 C -0.053 4.053 30 H 0.074 0.926 31 H 0.236 0.764 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.200 0.800 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.171 0.829 43 H 0.211 0.789 44 H 0.211 0.789 45 H 0.047 0.953 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 0.104 -3.223 -5.738 6.582 hybrid contribution 0.358 0.693 0.108 0.788 sum 0.462 -2.530 -5.630 6.189 Atomic orbital electron populations 1.69207 1.04608 1.26072 1.56268 1.24765 0.95657 0.97581 1.03110 0.86211 0.78780 0.83824 0.77649 1.21571 1.21728 1.20880 1.19364 0.91872 0.84469 1.40880 0.90925 1.43696 1.12280 0.99670 1.81810 1.20206 0.91635 0.86595 0.95427 0.94793 1.22257 0.98650 1.00526 0.95318 1.22457 0.96583 0.94131 0.97982 0.89685 1.23044 0.96759 0.97688 0.99062 1.22016 0.96067 0.84946 0.94036 0.89554 1.22172 0.99553 0.98835 0.96816 1.48658 1.10318 1.13443 1.60962 1.20575 0.80224 0.89418 0.76642 1.90586 1.39904 1.65929 1.48874 1.22718 1.02330 0.93938 1.02532 1.19508 0.95635 0.88321 1.02242 1.20549 1.03252 0.97195 0.93870 1.21926 1.04588 0.91420 1.02132 1.23900 1.05927 0.99929 0.83548 1.83979 1.67750 1.22998 1.33607 1.23728 1.08549 0.80627 1.00437 1.23271 0.83392 1.01452 0.97191 0.92561 0.76381 0.93228 0.91415 0.91767 0.90556 0.91446 0.91784 0.79961 0.92031 0.92731 0.90455 0.82927 0.78854 0.78928 0.95325 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -22.87 9.74 55.49 0.54 -22.33 16 2 C -0.02 -0.40 5.40 -17.43 -0.09 -0.49 16 3 Si 0.90 20.19 29.56 -169.99 -5.02 15.16 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.24 -5.67 7.66 -15.06 -0.12 -5.78 16 8 H 0.07 1.72 7.26 -52.49 -0.38 1.34 16 9 N -0.72 -16.25 2.78 -53.42 -0.15 -16.40 16 10 C 0.17 3.23 3.17 -67.92 -0.22 3.02 16 11 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.13 -2.05 5.16 -26.20 -0.14 -2.18 16 13 C -0.09 -1.41 4.33 -87.92 -0.38 -1.79 16 14 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 15 C -0.13 -1.78 6.20 -24.14 -0.15 -1.93 16 16 C 0.13 2.29 3.97 -65.79 -0.26 2.03 16 17 H 0.09 1.51 7.97 -51.93 -0.41 1.10 16 18 C -0.13 -2.34 5.39 -26.60 -0.14 -2.48 16 19 N -0.60 -11.75 1.73 -162.01 -0.28 -12.03 16 20 C 0.54 11.82 6.18 -10.98 -0.07 11.75 16 21 O -0.57 -13.85 16.22 5.55 0.09 -13.76 16 22 C -0.18 -3.68 4.79 -27.89 -0.13 -3.81 16 23 C -0.02 -0.38 5.03 -27.88 -0.14 -0.52 16 24 C -0.15 -2.69 5.42 -104.74 -0.57 -3.26 16 25 C -0.18 -3.27 10.31 -39.70 -0.41 -3.67 16 26 C -0.07 -1.03 12.09 29.42 0.36 -0.68 16 27 O -0.19 -3.02 10.65 5.71 0.06 -2.96 16 28 C -0.07 -1.07 12.01 29.41 0.35 -0.71 16 29 C 0.07 1.28 5.03 -2.83 -0.01 1.26 16 30 H 0.26 6.42 6.28 -40.82 -0.26 6.17 16 31 H 0.39 9.29 3.00 -40.82 -0.12 9.17 16 32 H 0.05 0.68 7.97 -51.93 -0.41 0.27 16 33 H 0.07 1.16 7.22 -51.93 -0.37 0.78 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.92 7.75 -51.93 -0.40 0.51 16 36 H 0.07 0.96 8.00 -51.93 -0.42 0.55 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.19 4.24 3.60 -51.93 -0.19 4.05 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.02 8.05 -51.93 -0.42 0.61 16 41 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 42 H 0.15 2.87 6.70 -52.49 -0.35 2.51 16 43 H 0.19 2.28 8.06 -52.49 -0.42 1.86 16 44 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.16 3.49 3.74 -58.33 -0.22 3.27 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -27.83 344.80 -8.24 -36.07 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -6.56 Total: 20.30 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -2.12 Total: -9.25 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.11 Total: -50.77 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.15 Total: -16.72 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.83 -8.24 -36.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094894444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.922 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds