Wall clock time and date at job start Tue Mar 31 2020 12:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86794 * 119.99994 * 2 1 4 4 H 1.48507 * 109.47021 * 269.99457 * 3 2 1 5 5 H 1.48503 * 109.47301 * 29.99091 * 3 2 1 6 6 H 1.48496 * 109.47450 * 149.99362 * 3 2 1 7 7 C 1.38813 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 187.06085 * 7 2 1 9 9 N 1.36931 * 120.00225 * 7.05905 * 7 2 1 10 10 C 1.46499 * 120.00387 * 189.28157 * 9 7 2 11 11 H 1.09004 * 109.17994 * 54.74476 * 10 9 7 12 12 C 1.53037 * 109.32227 * 295.19758 * 10 9 7 13 13 C 1.53973 * 108.82583 * 295.13865 * 12 10 9 14 14 H 1.09001 * 112.99014 * 168.09377 * 13 12 10 15 15 C 1.55425 * 106.41484 * 293.82342 * 13 12 10 16 16 C 1.55445 * 100.23487 * 73.19796 * 15 13 12 17 17 H 1.09004 * 113.04643 * 163.20993 * 16 15 13 18 18 C 1.52983 * 109.32797 * 174.30862 * 10 9 7 19 19 N 1.47786 * 104.11746 * 40.86201 * 16 15 13 20 20 C 1.34784 * 125.85631 * 153.44320 * 19 16 15 21 21 O 1.21284 * 119.99760 * 355.23504 * 20 19 16 22 22 C 1.50696 * 120.00310 * 175.50789 * 20 19 16 23 23 C 1.52999 * 109.47321 * 184.60642 * 22 20 19 24 24 C 1.50703 * 109.46997 * 180.02562 * 23 22 20 25 25 C 1.41383 * 126.57364 * 269.70943 * 24 23 22 26 26 C 1.34516 * 106.83699 * 179.83742 * 25 24 23 27 27 O 1.34301 * 108.41985 * 0.42588 * 26 25 24 28 28 C 1.34304 * 109.47752 * 359.72502 * 27 26 25 29 29 C 1.47076 * 108.29194 * 333.18130 * 19 16 15 30 30 H 0.96994 * 119.99915 * 0.02562 * 1 2 3 31 31 H 0.97005 * 120.00032 * 9.28082 * 9 7 2 32 32 H 1.08997 * 109.57626 * 175.33726 * 12 10 9 33 33 H 1.08995 * 109.58068 * 54.94356 * 12 10 9 34 34 H 1.09001 * 111.23200 * 191.15297 * 15 13 12 35 35 H 1.08999 * 111.23625 * 315.59784 * 15 13 12 36 36 H 1.09001 * 109.53236 * 185.06429 * 18 10 9 37 37 H 1.08998 * 109.53470 * 305.28576 * 18 10 9 38 38 H 1.09001 * 109.46895 * 304.60796 * 22 20 19 39 39 H 1.09001 * 109.46997 * 64.60358 * 22 20 19 40 40 H 1.09003 * 109.46795 * 300.00177 * 23 22 20 41 41 H 1.08996 * 109.47070 * 60.00324 * 23 22 20 42 42 H 1.07992 * 126.58220 * 359.97438 * 25 24 23 43 43 H 1.08001 * 125.78946 * 180.12126 * 26 25 24 44 44 H 1.08002 * 125.79103 * 180.02562 * 28 27 26 45 45 H 1.09002 * 109.97934 * 120.71734 * 29 19 16 46 46 H 1.08996 * 109.98033 * 241.96304 * 29 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3334 -2.3836 -0.1447 10 6 2.0298 -3.6565 0.0579 11 1 2.4970 -3.6563 1.0428 12 6 3.1092 -3.8195 -1.0145 13 6 2.4291 -3.9276 -2.3917 14 1 3.1307 -3.8387 -3.2211 15 6 1.6292 -5.2602 -2.3831 16 6 0.4524 -4.8699 -1.4456 17 1 -0.3943 -5.5528 -1.5165 18 6 1.0213 -4.8040 -0.0238 19 7 0.1041 -3.4941 -1.8578 20 6 -1.1049 -2.9129 -1.7268 21 8 -2.0457 -3.5569 -1.3132 22 6 -1.2892 -1.4646 -2.1002 23 6 -2.7126 -1.0251 -1.7514 24 6 -2.8970 0.4231 -2.1253 25 6 -2.6557 1.5441 -1.2982 26 6 -2.9449 2.6363 -2.0282 27 8 -3.3552 2.2382 -3.2434 28 6 -3.3281 0.8970 -3.3080 29 6 1.3046 -2.8657 -2.4296 30 1 -0.4850 0.8400 -0.0004 31 1 0.3928 -2.3778 -0.3817 32 1 3.6844 -4.7245 -0.8192 33 1 3.7712 -2.9537 -1.0010 34 1 1.2754 -5.5146 -3.3822 35 1 2.2189 -6.0718 -1.9569 36 1 1.5186 -5.7440 0.2151 37 1 0.2115 -4.6286 0.6843 38 1 -0.5747 -0.8535 -1.5487 39 1 -1.1228 -1.3413 -3.1704 40 1 -3.4270 -1.6363 -2.3029 41 1 -2.8789 -1.1483 -0.6812 42 1 -2.3044 1.5269 -0.2772 43 1 -2.8658 3.6597 -1.6922 44 1 -3.6051 0.3002 -4.1645 45 1 1.1123 -2.5636 -3.4591 46 1 1.5903 -1.9984 -1.8344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094894444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:59 Heat of formation + Delta-G solvation = 31.106831 kcal Electronic energy + Delta-G solvation = -29173.692187 eV Core-core repulsion = 25452.695449 eV Total energy + Delta-G solvation = -3720.996738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.33074 -42.36224 -39.43969 -36.12713 -35.46004 -34.32491 -32.75175 -32.36054 -31.84451 -30.03037 -29.08759 -26.58796 -25.69204 -25.32233 -22.77593 -22.52490 -22.33801 -21.00231 -20.23309 -19.78131 -19.11614 -18.26493 -17.73822 -16.90497 -16.76336 -16.60054 -16.21010 -15.87115 -15.46093 -15.42306 -14.97225 -14.55021 -14.37986 -14.04337 -13.80736 -13.57555 -13.45792 -13.32649 -13.18465 -13.12839 -13.02947 -12.84643 -12.74849 -12.62092 -12.49987 -12.31139 -12.02119 -11.78081 -11.60947 -11.45227 -11.20923 -10.89788 -10.71689 -10.36813 -10.29743 -9.33134 -9.25271 -8.42002 -7.76200 -5.09930 0.95797 1.52449 1.55951 1.60318 1.76781 1.86022 2.32802 2.39145 2.62383 3.41293 3.61791 3.76672 3.90650 3.98394 4.04098 4.19815 4.21867 4.24996 4.36377 4.40995 4.50815 4.51330 4.55948 4.63314 4.70829 4.81148 4.82157 4.95858 4.99128 5.01284 5.09981 5.14239 5.18444 5.29931 5.31140 5.43223 5.44716 5.45583 5.49519 5.62432 5.72761 5.73179 5.92731 6.00745 6.29797 6.48004 6.78384 7.38251 7.49558 8.19373 8.50594 9.36864 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.006078 C = 0.004619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.881843 B = 4605.417156 C = 6061.086647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.059 4.059 3 Si 0.953 3.047 4 H -0.289 1.289 5 H -0.302 1.302 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.073 0.927 9 N -0.735 5.735 10 C 0.160 3.840 11 H 0.020 0.980 12 C -0.118 4.118 13 C -0.083 4.083 14 H 0.116 0.884 15 C -0.109 4.109 16 C 0.120 3.880 17 H 0.081 0.919 18 C -0.128 4.128 19 N -0.597 5.597 20 C 0.529 3.471 21 O -0.607 6.607 22 C -0.173 4.173 23 C -0.005 4.005 24 C -0.177 4.177 25 C -0.214 4.214 26 C -0.049 4.049 27 O -0.184 6.184 28 C -0.052 4.052 29 C 0.062 3.938 30 H 0.259 0.741 31 H 0.385 0.615 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.026 0.974 38 H 0.169 0.831 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.041 0.959 42 H 0.134 0.866 43 H 0.232 0.768 44 H 0.228 0.772 45 H 0.035 0.965 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.291 -4.146 -7.863 9.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.252 4.252 3 Si 0.784 3.216 4 H -0.216 1.216 5 H -0.230 1.230 6 H -0.207 1.207 7 C -0.364 4.364 8 H 0.091 0.909 9 N -0.385 5.385 10 C 0.052 3.948 11 H 0.038 0.962 12 C -0.157 4.157 13 C -0.102 4.102 14 H 0.134 0.866 15 C -0.146 4.146 16 C 0.017 3.983 17 H 0.099 0.901 18 C -0.166 4.166 19 N -0.329 5.329 20 C 0.321 3.679 21 O -0.491 6.491 22 C -0.212 4.212 23 C -0.044 4.044 24 C -0.179 4.179 25 C -0.233 4.233 26 C -0.116 4.116 27 O -0.080 6.080 28 C -0.118 4.118 29 C -0.060 4.060 30 H 0.070 0.930 31 H 0.227 0.773 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.045 0.955 38 H 0.185 0.815 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.152 0.848 43 H 0.249 0.751 44 H 0.244 0.756 45 H 0.053 0.947 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.776 -4.125 -7.779 8.983 hybrid contribution -0.136 0.951 0.798 1.249 sum 1.640 -3.175 -6.981 7.842 Atomic orbital electron populations 1.69339 1.05270 1.26150 1.57235 1.25273 0.96252 0.99545 1.04105 0.85444 0.77687 0.81279 0.77150 1.21638 1.22954 1.20662 1.19509 0.91900 0.85247 1.39781 0.90886 1.43870 1.12121 1.00581 1.81924 1.20467 0.92644 0.85664 0.96020 0.96213 1.22135 0.97377 1.01663 0.94558 1.22509 0.95773 0.93482 0.98436 0.86604 1.23026 0.94821 0.97706 0.99092 1.22300 0.97445 0.83654 0.94888 0.90123 1.22136 0.98279 0.99998 0.96226 1.48735 1.09807 1.14537 1.59833 1.20780 0.80795 0.89744 0.76556 1.90548 1.41213 1.66666 1.50635 1.22634 1.02481 0.93292 1.02820 1.19267 0.95267 0.89874 0.99947 1.20519 1.05598 0.96321 0.95411 1.21911 1.06735 0.92693 1.01969 1.24482 1.03600 1.00832 0.82657 1.84018 1.67368 1.22962 1.33638 1.24224 1.06542 0.80680 1.00391 1.23252 0.84174 1.01881 0.96681 0.92964 0.77316 0.89697 0.92719 0.90281 0.87226 0.87498 0.95465 0.81527 0.90868 0.92222 0.93996 0.84782 0.75133 0.75615 0.94688 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -48.68 9.74 21.65 0.21 -48.47 16 2 C -0.06 -2.96 5.40 84.86 0.46 -2.50 16 3 Si 0.95 42.31 29.56 68.60 2.03 44.34 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.23 -11.41 7.66 84.03 0.64 -10.77 16 8 H 0.07 3.49 7.26 -2.91 -0.02 3.46 16 9 N -0.74 -33.58 2.78 -322.91 -0.90 -34.47 16 10 C 0.16 5.93 3.17 45.00 0.14 6.07 16 11 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 12 C -0.12 -3.41 5.16 30.94 0.16 -3.25 16 13 C -0.08 -2.23 4.33 -9.05 -0.04 -2.27 16 14 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 15 C -0.11 -2.55 6.20 32.27 0.20 -2.35 16 16 C 0.12 3.94 3.97 45.68 0.18 4.12 16 17 H 0.08 2.75 7.97 -2.39 -0.02 2.73 16 18 C -0.13 -4.29 5.39 30.68 0.17 -4.12 16 19 N -0.60 -23.29 1.73 -784.85 -1.36 -24.65 16 20 C 0.53 23.92 6.18 87.65 0.54 24.46 16 21 O -0.61 -30.63 16.22 -3.04 -0.05 -30.68 16 22 C -0.17 -7.50 4.79 29.85 0.14 -7.35 16 23 C -0.01 -0.23 5.03 29.85 0.15 -0.08 16 24 C -0.18 -6.60 5.42 -19.94 -0.11 -6.71 16 25 C -0.21 -7.90 10.31 22.19 0.23 -7.67 16 26 C -0.05 -1.47 12.09 66.97 0.81 -0.66 16 27 O -0.18 -5.59 10.65 -2.48 -0.03 -5.62 16 28 C -0.05 -1.58 12.01 66.97 0.80 -0.78 16 29 C 0.06 2.23 5.03 86.85 0.44 2.66 16 30 H 0.26 13.34 6.28 -92.71 -0.58 12.75 16 31 H 0.39 18.82 3.00 -92.70 -0.28 18.54 16 32 H 0.08 1.90 7.97 -2.39 -0.02 1.88 16 33 H 0.05 1.74 7.22 -2.39 -0.02 1.72 16 34 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.11 1.93 7.75 -2.39 -0.02 1.91 16 36 H 0.11 2.70 8.00 -2.39 -0.02 2.69 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.17 8.09 3.60 -2.39 -0.01 8.08 16 39 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.13 5.40 6.70 -2.91 -0.02 5.38 16 43 H 0.23 4.90 8.06 -2.91 -0.02 4.87 16 44 H 0.23 5.17 8.06 -2.91 -0.02 5.15 16 45 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.13 5.70 3.74 -15.02 -0.06 5.64 16 Total: -1.00 -63.98 344.80 5.69 -58.29 By element: Atomic # 1 Polarization: 51.58 SS G_CDS: 0.86 Total: 52.44 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 4.92 Total: -11.19 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -2.04 Total: -107.59 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -0.08 Total: -36.30 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -63.98 5.69 -58.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094894444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.400 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds