Wall clock time and date at job start Tue Mar 31 2020 12:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.50233 * 130.83791 * 0.02562 * 9 7 2 11 11 H 1.08998 * 115.86026 * 359.61066 * 10 9 7 12 12 C 1.55840 * 101.04988 * 233.93220 * 10 9 7 13 13 C 1.54853 * 103.44835 * 327.06110 * 12 10 9 14 14 C 1.50235 * 130.83734 * 179.68539 * 9 7 2 15 15 H 1.09000 * 115.85862 * 0.38978 * 14 9 7 16 16 C 1.55841 * 101.04924 * 234.00530 * 14 9 7 17 17 H 1.09002 * 110.62826 * 208.57100 * 16 14 9 18 18 N 1.46500 * 110.62858 * 85.55505 * 16 14 9 19 19 C 1.34783 * 120.00058 * 155.00320 * 18 16 14 20 20 O 1.21278 * 119.99999 * 359.97438 * 19 18 16 21 21 C 1.50699 * 119.99642 * 179.97438 * 19 18 16 22 22 H 1.09002 * 110.66794 * 61.76056 * 21 19 18 23 23 C 1.55000 * 110.74946 * 298.53752 * 21 19 18 24 24 C 1.55814 * 102.79005 * 241.67808 * 23 21 19 25 25 H 1.09001 * 115.38737 * 158.84008 * 24 23 21 26 26 O 1.46531 * 101.24469 * 32.41971 * 24 23 21 27 27 C 1.46529 * 99.68446 * 305.83964 * 26 24 23 28 28 H 1.09000 * 116.26302 * 179.97438 * 27 26 24 29 29 C 1.55820 * 101.24579 * 305.84038 * 27 26 24 30 30 H 1.08995 * 118.20143 * 171.69613 * 29 27 26 31 31 C 1.56905 * 117.21136 * 331.20219 * 29 27 26 32 32 C 1.53002 * 60.00902 * 88.79822 * 31 29 27 33 33 H 1.09000 * 120.22556 * 113.70503 * 32 31 29 34 34 C 1.54223 * 103.56630 * 327.14663 * 16 14 9 35 35 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 36 36 H 1.09002 * 110.62641 * 85.55405 * 12 10 9 37 37 H 1.09001 * 110.62536 * 208.57589 * 12 10 9 38 38 H 1.09000 * 110.62297 * 118.48939 * 13 12 10 39 39 H 1.08994 * 110.62717 * 241.35452 * 13 12 10 40 40 H 0.97001 * 119.99913 * 334.99522 * 18 16 14 41 41 H 1.09002 * 110.74887 * 0.02562 * 23 21 19 42 42 H 1.09001 * 110.74270 * 123.34969 * 23 21 19 43 43 H 1.09001 * 118.39519 * 341.80922 * 31 29 27 44 44 H 1.08998 * 116.95137 * 196.42427 * 31 29 27 45 45 H 1.08998 * 110.64750 * 241.43727 * 34 16 14 46 46 H 1.09001 * 110.49372 * 118.49344 * 34 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1499 -2.6706 -0.0005 11 1 -0.8013 -1.7967 0.0053 12 6 -0.2749 -3.6106 1.2362 13 6 1.0662 -4.3849 1.2370 14 6 1.8188 -3.8071 -0.0052 15 1 2.9014 -3.9342 -0.0036 16 6 1.0623 -4.3812 -1.2408 17 1 0.8889 -5.4508 -1.1221 18 7 1.8073 -4.1116 -2.4731 19 6 1.6391 -4.9050 -3.5496 20 8 0.8712 -5.8424 -3.4980 21 6 2.4050 -4.6273 -4.8174 22 1 3.4782 -4.7072 -4.6438 23 6 2.0427 -3.2305 -5.3831 24 6 1.4295 -3.5703 -6.7746 25 1 0.7851 -2.8018 -7.2016 26 8 0.8008 -4.8653 -6.5012 27 6 1.9530 -5.5888 -5.9572 28 1 1.7755 -6.6208 -5.6547 29 6 2.9982 -5.3966 -7.0968 30 1 4.0235 -5.7183 -6.9150 31 6 2.4460 -5.2273 -8.5557 32 6 2.6358 -3.9996 -7.6625 33 1 3.3827 -3.2471 -7.9156 34 6 -0.2733 -3.6102 -1.2376 35 1 -0.4850 0.8401 0.0004 36 1 -0.3828 -3.0287 2.1515 37 1 -1.1138 -4.2959 1.1144 38 1 1.6233 -4.1869 2.1527 39 1 0.8922 -5.4543 1.1184 40 1 2.4217 -3.3621 -2.5143 41 1 1.3084 -2.7351 -4.7477 42 1 2.9357 -2.6154 -5.4943 43 1 1.4237 -5.5437 -8.7630 44 1 3.1547 -5.3685 -9.3717 45 1 -1.1124 -4.2955 -1.1172 46 1 -0.3801 -3.0279 -2.1529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097562626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:18 Heat of formation + Delta-G solvation = 0.098413 kcal Electronic energy + Delta-G solvation = -28024.596200 eV Core-core repulsion = 24302.254837 eV Total energy + Delta-G solvation = -3722.341364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.54435 -41.11603 -39.60240 -35.31776 -35.09103 -34.43325 -33.17760 -30.97478 -30.53130 -30.31180 -29.25269 -26.19095 -25.39891 -23.86072 -22.65197 -21.55304 -21.39979 -21.14839 -20.67380 -20.22931 -18.84275 -18.32057 -17.73589 -17.41098 -16.86517 -16.69666 -15.99146 -15.85669 -15.37886 -15.25448 -15.05483 -14.64540 -14.18633 -13.73432 -13.67426 -13.61493 -13.38906 -12.99835 -12.90130 -12.79398 -12.77610 -12.64782 -12.43437 -12.30858 -12.12721 -12.07718 -11.98161 -11.89941 -11.69881 -11.23891 -11.12028 -11.02247 -10.94191 -10.87696 -10.66424 -10.48000 -9.93735 -8.86416 -7.74140 -5.14502 1.50352 1.52235 1.58225 1.66303 2.19079 2.51670 2.62682 2.77297 3.38609 3.42145 3.44702 3.51889 3.58160 3.80682 3.87990 3.98636 4.04093 4.09215 4.13726 4.20615 4.26559 4.36539 4.45959 4.48103 4.61303 4.62183 4.64494 4.70190 4.82484 4.83343 4.86746 4.90073 4.92288 4.97385 5.09193 5.13078 5.16275 5.18313 5.32131 5.37810 5.52168 5.53971 5.60559 5.71960 5.90109 6.27213 6.65946 7.06493 7.30611 7.73949 8.59834 9.33030 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014825 B = 0.004114 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.224919 B = 6804.945275 C = 8040.282061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.066 4.066 3 Si 0.974 3.026 4 H -0.303 1.303 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.215 4.215 8 H 0.087 0.913 9 N -0.609 5.609 10 C 0.141 3.859 11 H 0.115 0.885 12 C -0.133 4.133 13 C -0.120 4.120 14 C 0.128 3.872 15 H 0.105 0.895 16 C 0.140 3.860 17 H 0.083 0.917 18 N -0.702 5.702 19 C 0.518 3.482 20 O -0.584 6.584 21 C -0.127 4.127 22 H 0.139 0.861 23 C -0.130 4.130 24 C 0.078 3.922 25 H 0.139 0.861 26 O -0.399 6.399 27 C 0.109 3.891 28 H 0.123 0.877 29 C -0.197 4.197 30 H 0.149 0.851 31 C -0.131 4.131 32 C -0.183 4.183 33 H 0.145 0.855 34 C -0.132 4.132 35 H 0.245 0.755 36 H 0.039 0.961 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.406 0.594 41 H 0.056 0.944 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.127 0.873 45 H 0.060 0.940 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -9.179 -12.534 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.804 3.196 4 H -0.229 1.229 5 H -0.209 1.209 6 H -0.202 1.202 7 C -0.344 4.344 8 H 0.105 0.895 9 N -0.330 5.330 10 C 0.034 3.966 11 H 0.133 0.867 12 C -0.172 4.172 13 C -0.159 4.159 14 C 0.021 3.979 15 H 0.123 0.877 16 C 0.034 3.966 17 H 0.101 0.899 18 N -0.351 5.351 19 C 0.305 3.695 20 O -0.465 6.465 21 C -0.149 4.149 22 H 0.156 0.844 23 C -0.168 4.168 24 C 0.021 3.979 25 H 0.156 0.844 26 O -0.318 6.318 27 C 0.051 3.949 28 H 0.141 0.859 29 C -0.215 4.215 30 H 0.167 0.833 31 C -0.168 4.168 32 C -0.201 4.201 33 H 0.163 0.837 34 C -0.173 4.173 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.241 0.759 41 H 0.075 0.925 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.145 0.855 45 H 0.078 0.922 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.156 -9.574 -12.489 17.725 hybrid contribution 0.198 1.548 0.424 1.617 sum 8.355 -8.027 -12.065 16.727 Atomic orbital electron populations 1.69723 1.06296 1.24816 1.59001 1.25426 0.96246 1.00365 1.03804 0.85204 0.77000 0.79375 0.78034 1.22926 1.20908 1.20223 1.19325 0.90782 0.82885 1.41402 0.89532 1.46699 1.02079 0.99676 1.84543 1.23571 0.86942 0.95033 0.91052 0.86747 1.22965 0.97321 0.98026 0.98918 1.22915 0.96192 0.98838 0.97983 1.23449 0.97081 0.84592 0.92767 0.87702 1.22273 0.91769 0.98163 0.84442 0.89905 1.45964 1.45124 1.31738 1.12295 1.20884 0.81973 0.81451 0.85171 1.90638 1.39329 1.32344 1.84185 1.22956 1.02306 0.97696 0.91901 0.84367 1.23158 1.02609 0.95018 0.96021 1.24456 0.92787 0.86745 0.93960 0.84392 1.90115 1.33008 1.25741 1.82982 1.24008 0.83927 0.96360 0.90583 0.85895 1.24959 1.00517 1.02620 0.93418 0.83348 1.23478 1.02447 0.99046 0.91841 1.24368 1.00620 0.92479 1.02628 0.83688 1.23189 0.96865 0.97975 0.99260 0.94578 0.94252 0.91389 0.92076 0.90233 0.75875 0.92512 0.86779 0.89870 0.85498 0.92151 0.95038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.34 10.47 21.65 0.23 -54.12 16 2 C -0.07 -3.52 5.50 84.86 0.47 -3.05 16 3 Si 0.97 43.53 29.55 68.60 2.03 45.56 16 4 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.22 -10.97 10.59 84.03 0.89 -10.08 16 8 H 0.09 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.61 -28.26 2.98 -614.42 -1.83 -30.10 16 10 C 0.14 6.51 4.72 46.23 0.22 6.73 16 11 H 0.12 6.27 5.52 -2.39 -0.01 6.26 16 12 C -0.13 -5.20 6.44 32.21 0.21 -5.00 16 13 C -0.12 -4.08 6.46 32.38 0.21 -3.87 16 14 C 0.13 4.73 5.08 46.39 0.24 4.96 16 15 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 16 C 0.14 5.13 2.79 46.39 0.13 5.26 16 17 H 0.08 3.02 7.25 -2.39 -0.02 3.00 16 18 N -0.70 -23.39 4.96 -435.93 -2.16 -25.55 16 19 C 0.52 17.07 7.01 87.66 0.61 17.69 16 20 O -0.58 -23.68 15.54 -3.02 -0.05 -23.73 16 21 C -0.13 -3.07 2.89 -9.88 -0.03 -3.10 16 22 H 0.14 2.44 8.04 -2.39 -0.02 2.42 16 23 C -0.13 -2.99 6.11 32.25 0.20 -2.79 16 24 C 0.08 1.74 5.65 32.54 0.18 1.92 16 25 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 26 O -0.40 -12.02 10.82 -148.98 -1.61 -13.63 16 27 C 0.11 2.71 4.59 32.55 0.15 2.86 16 28 H 0.12 3.33 7.74 -2.39 -0.02 3.31 16 29 C -0.20 -3.34 6.80 -7.76 -0.05 -3.39 16 30 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 31 C -0.13 -2.08 9.98 31.96 0.32 -1.76 16 32 C -0.18 -2.95 6.50 -9.13 -0.06 -3.01 16 33 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 34 C -0.13 -5.56 6.20 31.99 0.20 -5.36 16 35 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 37 H 0.07 2.36 7.82 -2.39 -0.02 2.34 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.08 2.29 7.84 -2.39 -0.02 2.28 16 40 H 0.41 12.90 8.65 -92.71 -0.80 12.10 16 41 H 0.06 1.65 7.73 -2.39 -0.02 1.64 16 42 H 0.11 1.96 8.03 -2.39 -0.02 1.94 16 43 H 0.08 1.63 7.72 -2.39 -0.02 1.61 16 44 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 2.39 7.82 -2.39 -0.02 2.37 16 46 H 0.03 1.46 7.96 -2.39 -0.02 1.44 16 Total: -1.00 -67.56 358.19 0.67 -66.89 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.19 Total: 36.65 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 3.88 Total: -1.98 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -3.77 Total: -109.76 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.66 Total: -37.36 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -67.56 0.67 -66.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097562626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.992 kcal (2) G-P(sol) polarization free energy of solvation -67.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds