Wall clock time and date at job start Tue Mar 31 2020 12:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48507 * 109.46716 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47262 * 299.99557 * 3 2 1 6 6 H 1.48503 * 109.47317 * 60.00258 * 3 2 1 7 7 C 1.38815 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.46744 * 125.25274 * 359.97438 * 9 7 2 11 11 C 1.54082 * 106.54117 * 161.26354 * 10 9 7 12 12 C 1.53861 * 103.73633 * 28.06142 * 11 10 9 13 13 C 1.53003 * 111.25781 * 93.95475 * 12 11 10 14 14 N 1.46499 * 109.46894 * 61.01100 * 13 12 11 15 15 C 1.34779 * 119.99947 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99685 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00053 * 179.97438 * 15 14 13 18 18 C 1.50695 * 109.47046 * 180.02562 * 17 15 14 19 19 C 1.41388 * 126.58221 * 89.99968 * 18 17 15 20 20 C 1.34511 * 106.84442 * 179.97438 * 19 18 17 21 21 O 1.34295 * 108.42007 * 0.27361 * 20 19 18 22 22 C 1.34310 * 109.47916 * 359.55569 * 21 20 19 23 23 C 1.53361 * 110.28983 * 217.87245 * 12 11 10 24 24 C 1.55540 * 105.83486 * 118.03571 * 23 12 11 25 25 C 1.54678 * 104.35305 * 334.35990 * 24 23 12 26 26 C 1.46895 * 125.24868 * 180.02562 * 9 7 2 27 27 H 1.08996 * 111.83659 * 58.48953 * 26 9 7 28 28 H 0.97000 * 120.00298 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.03946 * 41.99440 * 10 9 7 30 30 H 1.08994 * 110.04276 * 280.53190 * 10 9 7 31 31 H 1.09001 * 110.57070 * 269.50200 * 11 10 9 32 32 H 1.08994 * 110.70105 * 146.69055 * 11 10 9 33 33 H 1.08996 * 109.46681 * 301.01679 * 13 12 11 34 34 H 1.08999 * 109.47249 * 181.01628 * 13 12 11 35 35 H 0.96998 * 120.00320 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.46577 * 60.00994 * 17 15 14 37 37 H 1.08994 * 109.47172 * 300.00665 * 17 15 14 38 38 H 1.08001 * 126.57171 * 0.02562 * 19 18 17 39 39 H 1.08002 * 125.78644 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.79002 * 180.14574 * 22 21 20 41 41 H 1.09000 * 110.05685 * 238.04363 * 23 12 11 42 42 H 1.08994 * 110.05433 * 359.54070 * 23 12 11 43 43 H 1.09000 * 110.54255 * 215.54855 * 24 23 12 44 44 H 1.09000 * 110.34977 * 93.07416 * 24 23 12 45 45 H 1.09004 * 110.61515 * 278.65321 * 25 24 23 46 46 H 1.09000 * 110.61653 * 155.66283 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1357 -2.5223 -0.0017 11 6 -0.4446 -3.9549 -0.4775 12 6 0.7944 -4.7584 -0.0455 13 6 0.5831 -5.4114 1.3220 14 7 -0.5485 -6.3391 1.2505 15 6 -0.9210 -7.0333 2.3441 16 8 -0.3196 -6.8895 3.3874 17 6 -2.0853 -7.9871 2.2706 18 6 -2.2934 -8.6303 3.6174 19 6 -3.1161 -8.1504 4.6624 20 6 -3.0087 -9.0270 5.6769 21 8 -2.1649 -10.0038 5.3063 22 6 -1.7325 -9.7716 4.0561 23 6 1.1488 -5.8032 -1.1108 24 6 2.5707 -5.4277 -1.6170 25 6 2.6847 -3.9087 -1.3484 26 6 1.9405 -3.7221 -0.0017 27 1 2.5898 -3.8692 0.8613 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5773 -1.7980 -0.6862 30 1 -0.5248 -2.3710 1.0051 31 1 -0.5600 -3.9821 -1.5610 32 1 -1.3397 -4.3388 0.0117 33 1 0.3747 -4.6408 2.0642 34 1 1.4827 -5.9568 1.6072 35 1 -1.0292 -6.4544 0.4159 36 1 -1.8775 -8.7575 1.5280 37 1 -2.9848 -7.4413 1.9861 38 1 -3.7161 -7.2525 4.6483 39 1 -3.5118 -8.9548 6.6299 40 1 -1.0467 -10.3930 3.4994 41 1 1.1410 -6.8012 -0.6727 42 1 0.4387 -5.7511 -1.9361 43 1 2.6643 -5.6349 -2.6830 44 1 3.3293 -5.9726 -1.0551 45 1 2.1946 -3.3412 -2.1396 46 1 3.7295 -3.6130 -1.2535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107373032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:23 Heat of formation + Delta-G solvation = -1.991015 kcal Electronic energy + Delta-G solvation = -26998.709016 eV Core-core repulsion = 23276.277048 eV Total energy + Delta-G solvation = -3722.431968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.64569 -40.01087 -38.84477 -34.76554 -34.06473 -33.92020 -31.74291 -30.74669 -30.17231 -28.48357 -27.19017 -26.68152 -24.25667 -23.83174 -21.71913 -21.33324 -20.26063 -20.06078 -19.73195 -18.33030 -17.60584 -17.13450 -16.74235 -15.89679 -15.52763 -15.47172 -14.89807 -14.74748 -14.70190 -14.27372 -13.61568 -13.52603 -13.31374 -13.06197 -12.89729 -12.74553 -12.57923 -12.48052 -11.84102 -11.69904 -11.43995 -11.27193 -11.12863 -10.81533 -10.73978 -10.66300 -10.26107 -10.13992 -10.06378 -9.94405 -9.84579 -9.58850 -9.57138 -9.43695 -8.83469 -8.63682 -8.59097 -6.80630 -5.65163 -3.03852 1.66937 2.43366 2.75978 3.03307 3.40479 3.44134 3.46853 3.48551 4.50253 4.59578 4.64490 4.83648 4.87967 4.99164 5.02457 5.07982 5.23697 5.33496 5.51750 5.54407 5.57066 5.58653 5.76181 5.83817 5.87587 5.88939 6.02731 6.04087 6.08719 6.09561 6.20038 6.30661 6.36299 6.40044 6.44473 6.48429 6.64878 6.70079 6.77675 6.86846 6.99408 7.12528 7.56453 7.64024 7.69480 7.87644 8.36125 8.36486 9.25630 9.86725 10.50026 11.40563 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.002927 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.042152 B = 9563.090010 C =10476.343814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.596 5.596 10 C 0.163 3.837 11 C -0.133 4.133 12 C -0.082 4.082 13 C 0.141 3.859 14 N -0.724 5.724 15 C 0.508 3.492 16 O -0.534 6.534 17 C -0.072 4.072 18 C -0.161 4.161 19 C -0.198 4.198 20 C -0.046 4.046 21 O -0.178 6.178 22 C -0.030 4.030 23 C -0.110 4.110 24 C -0.122 4.122 25 C -0.130 4.130 26 C 0.172 3.828 27 H 0.047 0.953 28 H 0.250 0.750 29 H 0.092 0.908 30 H 0.012 0.988 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.146 0.854 39 H 0.201 0.799 40 H 0.199 0.801 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -19.616 1.313 20.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.320 5.320 10 C 0.038 3.962 11 C -0.171 4.171 12 C -0.083 4.083 13 C 0.018 3.982 14 N -0.376 5.376 15 C 0.294 3.706 16 O -0.411 6.411 17 C -0.112 4.112 18 C -0.162 4.162 19 C -0.217 4.217 20 C -0.113 4.113 21 O -0.074 6.074 22 C -0.098 4.098 23 C -0.148 4.148 24 C -0.160 4.160 25 C -0.170 4.170 26 C 0.064 3.936 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.164 0.836 39 H 0.217 0.783 40 H 0.216 0.784 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.262 -19.493 2.270 20.318 hybrid contribution 0.153 1.160 -0.461 1.258 sum -5.108 -18.333 1.809 19.117 Atomic orbital electron populations 1.69895 1.04839 1.24586 1.57749 1.24776 0.95699 0.97644 1.02553 0.86046 0.78710 0.83867 0.77180 1.20557 1.21851 1.21846 1.19084 0.90499 0.82386 1.42738 0.90494 1.44345 1.01599 0.99539 1.86503 1.21430 0.84544 0.90988 0.99231 1.22789 0.95208 0.99009 1.00116 1.21874 0.98065 0.95207 0.93122 1.21320 0.87964 0.91527 0.97357 1.46073 1.34646 1.43972 1.12945 1.20533 0.85102 0.81263 0.83701 1.90725 1.55210 1.65621 1.29514 1.20003 0.98193 0.98264 0.94707 1.19805 1.02246 0.96931 0.97246 1.21700 1.04073 1.01914 0.94021 1.23939 0.97066 0.89454 1.00867 1.84047 1.49663 1.44607 1.29075 1.23756 1.02280 0.99754 0.83974 1.22371 0.97477 0.97432 0.97525 1.22520 0.96185 0.97579 0.99763 1.22999 1.00270 0.93765 0.99977 1.21536 0.91846 0.85407 0.94789 0.93571 0.93917 0.88965 0.97025 0.92126 0.92542 0.91082 0.91860 0.76671 0.88209 0.87933 0.83577 0.78254 0.78426 0.92246 0.91810 0.92551 0.92440 0.90970 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.72 10.14 55.49 0.56 -26.16 16 2 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.22 -5.96 9.96 -15.06 -0.15 -6.11 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.65 2.99 -162.39 -0.48 -15.13 16 10 C 0.16 3.85 5.65 -3.34 -0.02 3.83 16 11 C -0.13 -2.32 5.77 -25.72 -0.15 -2.47 16 12 C -0.08 -1.31 0.53 -153.04 -0.08 -1.39 16 13 C 0.14 2.23 4.43 -4.04 -0.02 2.21 16 14 N -0.72 -9.13 4.65 -60.29 -0.28 -9.41 16 15 C 0.51 6.89 7.82 -10.98 -0.09 6.81 16 16 O -0.53 -9.77 16.03 5.56 0.09 -9.68 16 17 C -0.07 -0.68 6.22 -29.04 -0.18 -0.86 16 18 C -0.16 -1.81 4.66 -104.74 -0.49 -2.30 16 19 C -0.20 -2.20 10.87 -39.70 -0.43 -2.63 16 20 C -0.05 -0.46 12.09 29.41 0.36 -0.10 16 21 O -0.18 -2.00 10.65 5.71 0.06 -1.94 16 22 C -0.03 -0.31 12.01 29.42 0.35 0.04 16 23 C -0.11 -1.44 5.75 -25.19 -0.14 -1.59 16 24 C -0.12 -1.70 6.88 -24.50 -0.17 -1.86 16 25 C -0.13 -2.32 6.23 -24.80 -0.15 -2.47 16 26 C 0.17 3.42 3.60 -65.83 -0.24 3.18 16 27 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 1.03 7.42 -51.93 -0.39 0.64 16 32 H 0.06 0.88 7.02 -51.93 -0.36 0.51 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.40 3.97 7.55 -40.82 -0.31 3.67 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.20 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 42 H 0.06 0.79 7.28 -51.93 -0.38 0.41 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 367.65 15.07 5.54 5.54 Total: -1.00 -33.47 367.65 -8.40 -41.88 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.17 Total: 3.94 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -1.69 Total: -6.11 kcal Atomic # 7 Polarization: -50.49 SS G_CDS: -0.20 Total: -50.70 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.15 Total: -11.62 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.47 -8.40 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107373032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.884 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds