Wall clock time and date at job start Tue Mar 31 2020 12:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99816 * 2 1 4 4 H 1.48507 * 109.46716 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47262 * 299.99557 * 3 2 1 6 6 H 1.48503 * 109.47317 * 60.00258 * 3 2 1 7 7 C 1.38815 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00001 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.46744 * 125.25274 * 359.97438 * 9 7 2 11 11 C 1.54082 * 106.54117 * 161.26354 * 10 9 7 12 12 C 1.53861 * 103.73633 * 28.06142 * 11 10 9 13 13 C 1.53003 * 111.25781 * 93.95475 * 12 11 10 14 14 N 1.46499 * 109.46894 * 61.01100 * 13 12 11 15 15 C 1.34779 * 119.99947 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99685 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00053 * 179.97438 * 15 14 13 18 18 C 1.50695 * 109.47046 * 180.02562 * 17 15 14 19 19 C 1.41388 * 126.58221 * 89.99968 * 18 17 15 20 20 C 1.34511 * 106.84442 * 179.97438 * 19 18 17 21 21 O 1.34295 * 108.42007 * 0.27361 * 20 19 18 22 22 C 1.34310 * 109.47916 * 359.55569 * 21 20 19 23 23 C 1.53361 * 110.28983 * 217.87245 * 12 11 10 24 24 C 1.55540 * 105.83486 * 118.03571 * 23 12 11 25 25 C 1.54678 * 104.35305 * 334.35990 * 24 23 12 26 26 C 1.46895 * 125.24868 * 180.02562 * 9 7 2 27 27 H 1.08996 * 111.83659 * 58.48953 * 26 9 7 28 28 H 0.97000 * 120.00298 * 0.02562 * 1 2 3 29 29 H 1.08998 * 110.03946 * 41.99440 * 10 9 7 30 30 H 1.08994 * 110.04276 * 280.53190 * 10 9 7 31 31 H 1.09001 * 110.57070 * 269.50200 * 11 10 9 32 32 H 1.08994 * 110.70105 * 146.69055 * 11 10 9 33 33 H 1.08996 * 109.46681 * 301.01679 * 13 12 11 34 34 H 1.08999 * 109.47249 * 181.01628 * 13 12 11 35 35 H 0.96998 * 120.00320 * 0.02562 * 14 13 12 36 36 H 1.09003 * 109.46577 * 60.00994 * 17 15 14 37 37 H 1.08994 * 109.47172 * 300.00665 * 17 15 14 38 38 H 1.08001 * 126.57171 * 0.02562 * 19 18 17 39 39 H 1.08002 * 125.78644 * 179.97438 * 20 19 18 40 40 H 1.08001 * 125.79002 * 180.14574 * 22 21 20 41 41 H 1.09000 * 110.05685 * 238.04363 * 23 12 11 42 42 H 1.08994 * 110.05433 * 359.54070 * 23 12 11 43 43 H 1.09000 * 110.54255 * 215.54855 * 24 23 12 44 44 H 1.09000 * 110.34977 * 93.07416 * 24 23 12 45 45 H 1.09004 * 110.61515 * 278.65321 * 25 24 23 46 46 H 1.09000 * 110.61653 * 155.66283 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1357 -2.5223 -0.0017 11 6 -0.4446 -3.9549 -0.4775 12 6 0.7944 -4.7584 -0.0455 13 6 0.5831 -5.4114 1.3220 14 7 -0.5485 -6.3391 1.2505 15 6 -0.9210 -7.0333 2.3441 16 8 -0.3196 -6.8895 3.3874 17 6 -2.0853 -7.9871 2.2706 18 6 -2.2934 -8.6303 3.6174 19 6 -3.1161 -8.1504 4.6624 20 6 -3.0087 -9.0270 5.6769 21 8 -2.1649 -10.0038 5.3063 22 6 -1.7325 -9.7716 4.0561 23 6 1.1488 -5.8032 -1.1108 24 6 2.5707 -5.4277 -1.6170 25 6 2.6847 -3.9087 -1.3484 26 6 1.9405 -3.7221 -0.0017 27 1 2.5898 -3.8692 0.8613 28 1 -0.4850 0.8400 -0.0004 29 1 -0.5773 -1.7980 -0.6862 30 1 -0.5248 -2.3710 1.0051 31 1 -0.5600 -3.9821 -1.5610 32 1 -1.3397 -4.3388 0.0117 33 1 0.3747 -4.6408 2.0642 34 1 1.4827 -5.9568 1.6072 35 1 -1.0292 -6.4544 0.4159 36 1 -1.8775 -8.7575 1.5280 37 1 -2.9848 -7.4413 1.9861 38 1 -3.7161 -7.2525 4.6483 39 1 -3.5118 -8.9548 6.6299 40 1 -1.0467 -10.3930 3.4994 41 1 1.1410 -6.8012 -0.6727 42 1 0.4387 -5.7511 -1.9361 43 1 2.6643 -5.6349 -2.6830 44 1 3.3293 -5.9726 -1.0551 45 1 2.1946 -3.3412 -2.1396 46 1 3.7295 -3.6130 -1.2535 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107373032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:22 Heat of formation + Delta-G solvation = -23.371257 kcal Electronic energy + Delta-G solvation = -26999.636133 eV Core-core repulsion = 23276.277048 eV Total energy + Delta-G solvation = -3723.359085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.40715 -41.33150 -40.11476 -36.32069 -35.35049 -34.88846 -33.45068 -32.14663 -31.26088 -29.63957 -28.38070 -28.23784 -25.75440 -25.48077 -22.55028 -22.44148 -21.68770 -21.30299 -20.90031 -19.67814 -18.92198 -18.36208 -18.00791 -16.87110 -16.74743 -16.67433 -16.52992 -16.07417 -15.79245 -15.47014 -15.19656 -14.64332 -14.56058 -14.45191 -14.28140 -13.78105 -13.64529 -13.42958 -13.36542 -13.17997 -12.90563 -12.84991 -12.63709 -12.41923 -12.36938 -11.98190 -11.86050 -11.62285 -11.52511 -11.40648 -11.32791 -11.04454 -11.01015 -10.69046 -10.49005 -10.02973 -9.39338 -8.83164 -7.77702 -5.17782 0.91322 1.44078 1.45023 1.54885 1.61252 1.72301 2.32497 2.42650 2.50499 3.33158 3.51928 3.67713 3.74974 3.82113 3.95664 3.99406 4.11757 4.22537 4.30677 4.40108 4.45485 4.54614 4.58016 4.62838 4.67288 4.67837 4.78142 4.84705 4.88273 4.95713 5.06686 5.14291 5.17159 5.20671 5.31422 5.33767 5.40535 5.44166 5.49583 5.55644 5.61938 5.62626 5.72223 5.87552 6.23125 6.31363 6.65094 7.14899 7.35083 7.84867 8.45837 9.26195 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018477 B = 0.002927 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.042152 B = 9563.090010 C =10476.343814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.297 1.297 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.615 5.615 10 C 0.168 3.832 11 C -0.116 4.116 12 C -0.067 4.067 13 C 0.153 3.847 14 N -0.710 5.710 15 C 0.507 3.493 16 O -0.588 6.588 17 C -0.061 4.061 18 C -0.184 4.184 19 C -0.227 4.227 20 C -0.048 4.048 21 O -0.192 6.192 22 C -0.037 4.037 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.125 4.125 26 C 0.155 3.845 27 H 0.032 0.968 28 H 0.244 0.756 29 H 0.057 0.943 30 H -0.030 1.030 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.417 0.583 36 H 0.139 0.861 37 H 0.122 0.878 38 H 0.150 0.850 39 H 0.231 0.769 40 H 0.226 0.774 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.736 -22.525 -0.205 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.262 4.262 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.224 1.224 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.339 5.339 10 C 0.042 3.958 11 C -0.154 4.154 12 C -0.068 4.068 13 C 0.029 3.971 14 N -0.363 5.363 15 C 0.296 3.704 16 O -0.468 6.468 17 C -0.100 4.100 18 C -0.185 4.185 19 C -0.246 4.246 20 C -0.115 4.115 21 O -0.087 6.087 22 C -0.105 4.105 23 C -0.138 4.138 24 C -0.150 4.150 25 C -0.165 4.165 26 C 0.048 3.952 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.075 0.925 30 H -0.012 1.012 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.254 0.746 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.168 0.832 39 H 0.247 0.753 40 H 0.242 0.758 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.068 0.932 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.258 -22.446 0.709 23.064 hybrid contribution 0.180 2.093 0.100 2.103 sum -5.078 -20.352 0.808 20.992 Atomic orbital electron populations 1.70143 1.06095 1.24666 1.59109 1.25567 0.96582 1.00767 1.03261 0.85067 0.78161 0.79895 0.76609 1.19226 1.21729 1.22407 1.19401 0.90818 0.83836 1.41555 0.90512 1.44618 1.02259 1.00745 1.86250 1.21186 0.84090 0.94334 0.96158 1.22634 0.96819 0.94920 1.01048 1.21750 0.95567 0.95046 0.94420 1.20962 0.89183 0.91006 0.95955 1.45879 1.33750 1.42842 1.13840 1.21306 0.85382 0.81071 0.82690 1.90710 1.57192 1.67351 1.31511 1.20057 0.96759 0.98256 0.94972 1.20152 1.02689 0.97505 0.98198 1.22006 1.05007 1.02652 0.94913 1.24569 0.96405 0.88724 1.01771 1.84049 1.49975 1.45111 1.29609 1.24355 1.02241 1.00078 0.83793 1.22358 0.97336 0.97270 0.96794 1.22478 0.97077 0.93881 1.01570 1.22823 0.99103 0.97047 0.97500 1.21844 0.93445 0.84363 0.95522 0.94996 0.94640 0.92493 1.01234 0.90542 0.90268 0.95497 0.91829 0.74553 0.84328 0.85984 0.83232 0.75308 0.75794 0.89431 0.89826 0.90247 0.91076 0.93218 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.64 10.14 21.65 0.22 -57.42 16 2 C -0.07 -4.01 5.48 84.86 0.47 -3.55 16 3 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 7 C -0.23 -12.80 9.96 84.03 0.84 -11.97 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.61 -31.36 2.99 -667.69 -1.99 -33.35 16 10 C 0.17 8.26 5.65 86.70 0.49 8.75 16 11 C -0.12 -3.93 5.77 31.25 0.18 -3.75 16 12 C -0.07 -2.03 0.53 -51.23 -0.03 -2.06 16 13 C 0.15 4.72 4.43 86.38 0.38 5.10 16 14 N -0.71 -16.09 4.65 -463.06 -2.15 -18.24 16 15 C 0.51 12.80 7.82 87.66 0.69 13.48 16 16 O -0.59 -21.37 16.03 -3.04 -0.05 -21.42 16 17 C -0.06 -0.97 6.22 29.10 0.18 -0.79 16 18 C -0.18 -3.81 4.66 -19.94 -0.09 -3.90 16 19 C -0.23 -4.85 10.87 22.19 0.24 -4.60 16 20 C -0.05 -0.90 12.09 66.97 0.81 -0.09 16 21 O -0.19 -4.06 10.65 -2.48 -0.03 -4.09 16 22 C -0.04 -0.72 12.01 66.97 0.80 0.09 16 23 C -0.10 -2.17 5.75 31.59 0.18 -1.99 16 24 C -0.11 -2.67 6.88 32.04 0.22 -2.45 16 25 C -0.13 -4.31 6.23 31.85 0.20 -4.12 16 26 C 0.16 6.19 3.60 46.14 0.17 6.36 16 27 H 0.03 1.36 7.92 -2.39 -0.02 1.35 16 28 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 29 H 0.06 3.21 6.16 -2.39 -0.01 3.19 16 30 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 31 H 0.08 2.40 7.42 -2.39 -0.02 2.38 16 32 H 0.08 2.32 7.02 -2.39 -0.02 2.30 16 33 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.42 6.52 7.55 -92.71 -0.70 5.82 16 36 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 39 H 0.23 2.46 8.06 -2.91 -0.02 2.43 16 40 H 0.23 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.09 1.50 7.51 -2.39 -0.02 1.48 16 42 H 0.08 1.58 7.28 -2.39 -0.02 1.56 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 1.94 8.06 -2.38 -0.02 1.92 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -79.03 367.65 4.03 -75.00 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.28 Total: 16.22 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.72 Total: -5.48 kcal Atomic # 7 Polarization: -105.09 SS G_CDS: -3.93 Total: -109.01 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.08 Total: -25.50 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -79.03 4.03 -75.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107373032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.633 kcal (2) G-P(sol) polarization free energy of solvation -79.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds