Wall clock time and date at job start Tue Mar 31 2020 12:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47032 * 239.99797 * 3 2 1 5 5 H 1.48501 * 109.47445 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47564 * 119.99933 * 3 2 1 7 7 C 1.38813 * 119.99978 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00167 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.47221 * 126.70059 * 0.02570 * 9 7 2 11 11 C 1.53795 * 106.35595 * 148.74308 * 10 9 7 12 12 H 1.09000 * 111.63669 * 257.32091 * 11 10 9 13 13 C 1.54190 * 109.12374 * 132.67152 * 11 10 9 14 14 C 1.54859 * 104.29638 * 223.08253 * 13 11 10 15 15 C 1.56222 * 103.17822 * 37.76654 * 14 13 11 16 16 C 1.54190 * 103.64639 * 322.66001 * 15 14 13 17 17 N 1.46496 * 111.61243 * 260.32749 * 16 15 14 18 18 C 1.34777 * 120.00271 * 298.58207 * 17 16 15 19 19 O 1.21278 * 119.99854 * 0.02562 * 18 17 16 20 20 C 1.50703 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.53000 * 109.46912 * 180.02562 * 20 18 17 22 22 C 1.50706 * 109.46735 * 180.02562 * 21 20 18 23 23 C 1.34507 * 125.79432 * 89.71686 * 22 21 20 24 24 C 1.41381 * 106.84445 * 179.88676 * 23 22 21 25 25 C 1.34510 * 106.83649 * 0.37177 * 24 23 22 26 26 O 1.34300 * 108.42526 * 359.77098 * 25 24 23 27 27 C 1.47226 * 126.70091 * 179.97438 * 9 7 2 28 28 H 0.97000 * 120.00202 * 359.97438 * 1 2 3 29 29 H 1.09004 * 110.07463 * 267.96566 * 10 9 7 30 30 H 1.08993 * 110.07958 * 29.51973 * 10 9 7 31 31 H 1.09002 * 110.46597 * 341.78430 * 13 11 10 32 32 H 1.09001 * 110.46576 * 104.37946 * 13 11 10 33 33 H 1.08997 * 110.75686 * 156.45141 * 14 13 11 34 34 H 1.09005 * 110.75462 * 279.63565 * 14 13 11 35 35 H 1.09002 * 111.85764 * 203.64581 * 15 14 13 36 36 H 1.08995 * 109.69852 * 80.63264 * 15 14 13 37 37 H 0.97005 * 120.00266 * 118.58790 * 17 16 15 38 38 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 39 39 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 40 40 H 1.09001 * 109.47194 * 299.99742 * 21 20 18 41 41 H 1.08992 * 109.47399 * 59.99914 * 21 20 18 42 42 H 1.08004 * 126.57405 * 0.02562 * 23 22 21 43 43 H 1.07994 * 126.57759 * 180.12124 * 24 23 22 44 44 H 1.08005 * 125.79041 * 179.79514 * 25 24 23 45 45 H 1.08997 * 110.07518 * 92.03585 * 27 9 7 46 46 H 1.09005 * 110.12348 * 330.50552 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1366 -2.5598 -0.0005 11 6 -0.4189 -3.8636 -0.7659 12 1 -0.7701 -3.6670 -1.7788 13 6 -1.4164 -4.7178 0.0422 14 6 -0.8498 -6.1561 -0.0493 15 6 0.6947 -5.9365 0.0338 16 6 0.9208 -4.6371 -0.7649 17 7 1.3871 -4.9144 -2.1257 18 6 2.5550 -5.5584 -2.3198 19 8 3.2197 -5.9088 -1.3678 20 6 3.0350 -5.8432 -3.7197 21 6 4.3752 -6.5787 -3.6596 22 6 4.8555 -6.8628 -5.0595 23 6 5.6270 -6.0526 -5.8062 24 6 5.8361 -6.7093 -7.0407 25 6 5.1729 -7.8779 -6.9776 26 8 4.5808 -7.9655 -5.7754 27 6 1.9079 -3.7403 0.0005 28 1 -0.4850 0.8400 0.0004 29 1 -0.5047 -2.6391 1.0224 30 1 -0.6118 -1.7190 -0.5057 31 1 -1.4488 -4.3862 1.0800 32 1 -2.4091 -4.6700 -0.4054 33 1 -1.2010 -6.7634 0.7849 34 1 -1.1174 -6.6170 -1.0002 35 1 1.2467 -6.7615 -0.4165 36 1 0.9911 -5.8010 1.0738 37 1 0.8553 -4.6344 -2.8872 38 1 3.1592 -4.9042 -4.2592 39 1 2.3027 -6.4644 -4.2355 40 1 5.1076 -5.9577 -3.1437 41 1 4.2506 -7.5175 -3.1202 42 1 6.0146 -5.0868 -5.5171 43 1 6.4137 -6.3413 -7.8756 44 1 5.1250 -8.6200 -7.7608 45 1 2.0225 -4.0983 1.0236 46 1 2.8744 -3.7323 -0.5034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111588763.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:00 Heat of formation + Delta-G solvation = -20.934341 kcal Electronic energy + Delta-G solvation = -27103.510419 eV Core-core repulsion = 23380.257006 eV Total energy + Delta-G solvation = -3723.253412 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.46082 -41.59871 -39.58317 -36.30756 -35.02173 -34.64469 -33.68546 -33.37139 -31.06812 -30.07522 -29.08657 -26.47472 -26.31735 -25.23127 -22.76700 -22.63475 -21.84805 -21.25395 -20.61928 -20.22333 -19.01521 -18.39358 -17.69064 -17.11147 -16.92934 -16.79789 -16.64981 -15.89529 -15.63835 -15.35530 -15.29519 -14.89158 -14.50745 -14.11137 -13.93913 -13.71953 -13.52478 -13.41848 -13.31732 -13.17579 -13.06383 -12.85007 -12.76264 -12.43503 -12.29876 -12.07634 -12.00963 -11.83998 -11.76095 -11.64377 -11.41306 -11.23134 -10.85028 -10.79038 -10.68916 -9.94501 -9.35764 -8.91926 -7.76078 -5.24651 0.80706 1.44917 1.47730 1.54411 1.71391 1.72243 2.05111 2.36870 2.47922 3.29254 3.46126 3.58161 3.68479 3.87185 3.91741 4.02519 4.06436 4.17303 4.18091 4.34460 4.38294 4.44915 4.49634 4.59657 4.61795 4.75258 4.77447 4.82745 4.89237 4.96862 4.98781 5.00848 5.06821 5.09398 5.14572 5.23675 5.27074 5.30229 5.41723 5.50853 5.60402 5.63430 5.76071 5.82376 6.24106 6.35751 6.66890 7.09716 7.35648 7.74697 8.42609 9.21494 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012110 B = 0.003516 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.587945 B = 7961.482627 C = 9717.430557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.060 4.060 3 Si 0.980 3.020 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.618 5.618 10 C 0.143 3.857 11 C -0.102 4.102 12 H 0.089 0.911 13 C -0.109 4.109 14 C -0.108 4.108 15 C -0.113 4.113 16 C 0.170 3.830 17 N -0.701 5.701 18 C 0.510 3.490 19 O -0.575 6.575 20 C -0.125 4.125 21 C -0.017 4.017 22 C -0.023 4.023 23 C -0.222 4.222 24 C -0.229 4.229 25 C -0.042 4.042 26 O -0.191 6.191 27 C 0.137 3.863 28 H 0.250 0.750 29 H -0.012 1.012 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.410 0.590 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.152 0.848 43 H 0.166 0.834 44 H 0.238 0.762 45 H 0.009 0.991 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -16.603 -13.624 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.807 3.193 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.342 5.342 10 C 0.018 3.982 11 C -0.122 4.122 12 H 0.108 0.892 13 C -0.147 4.147 14 C -0.146 4.146 15 C -0.152 4.152 16 C 0.082 3.918 17 N -0.352 5.352 18 C 0.298 3.702 19 O -0.455 6.455 20 C -0.164 4.164 21 C -0.055 4.055 22 C -0.072 4.072 23 C -0.241 4.241 24 C -0.247 4.247 25 C -0.109 4.109 26 O -0.088 6.088 27 C 0.010 3.990 28 H 0.060 0.940 29 H 0.006 0.994 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.247 0.753 38 H 0.126 0.874 39 H 0.136 0.864 40 H 0.110 0.890 41 H 0.101 0.899 42 H 0.169 0.831 43 H 0.184 0.816 44 H 0.254 0.746 45 H 0.027 0.973 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.538 -16.825 -12.833 21.312 hybrid contribution 0.645 1.594 0.014 1.719 sum 3.183 -15.231 -12.820 20.161 Atomic orbital electron populations 1.69844 1.05929 1.25114 1.58335 1.25545 0.96658 1.00580 1.02493 0.85143 0.77217 0.78857 0.78040 1.20313 1.21344 1.20918 1.19337 0.90621 0.83849 1.43103 0.91183 1.44840 1.02911 1.00333 1.86107 1.21914 0.84249 0.96467 0.95601 1.22872 0.93462 0.95502 1.00396 0.89242 1.22391 0.98357 0.94504 0.99417 1.22703 0.92848 0.96127 1.02877 1.22817 0.97656 0.95799 0.98948 1.21493 0.93526 0.94334 0.82430 1.45935 1.22771 1.58356 1.08126 1.21044 0.80295 0.76688 0.92141 1.90685 1.56307 1.53590 1.44872 1.21617 0.98147 1.03715 0.92944 1.19706 0.96461 1.01824 0.87511 1.22451 1.02464 0.86736 0.95588 1.21917 1.04201 1.02434 0.95562 1.22172 1.06073 0.96618 0.99878 1.24792 0.98073 1.01117 0.86919 1.84016 1.60184 1.39264 1.25301 1.21746 0.95711 0.85531 0.96023 0.94044 0.99422 0.88933 0.92598 0.89461 0.90070 0.89994 0.91042 0.92539 0.75317 0.87418 0.86410 0.89010 0.89869 0.83053 0.81612 0.74589 0.97288 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.44 10.08 21.65 0.22 -55.22 16 2 C -0.06 -3.43 5.49 84.86 0.47 -2.96 16 3 Si 0.98 46.06 29.55 68.60 2.03 48.08 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.24 -13.96 10.34 84.03 0.87 -13.09 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.62 -33.04 3.39 -695.27 -2.36 -35.39 16 10 C 0.14 6.98 5.77 86.51 0.50 7.48 16 11 C -0.10 -3.64 3.67 -9.54 -0.03 -3.68 16 12 H 0.09 2.92 7.69 -2.39 -0.02 2.90 16 13 C -0.11 -3.12 6.38 31.63 0.20 -2.92 16 14 C -0.11 -2.63 6.92 32.35 0.22 -2.40 16 15 C -0.11 -3.53 5.75 32.12 0.18 -3.35 16 16 C 0.17 6.02 0.94 4.85 0.00 6.02 16 17 N -0.70 -20.64 5.23 -417.32 -2.18 -22.82 16 18 C 0.51 14.95 6.81 87.66 0.60 15.55 16 19 O -0.57 -21.12 13.48 -3.02 -0.04 -21.16 16 20 C -0.12 -2.59 5.68 29.85 0.17 -2.42 16 21 C -0.02 -0.38 5.04 29.85 0.15 -0.23 16 22 C -0.02 -0.49 6.57 24.83 0.16 -0.33 16 23 C -0.22 -4.56 10.81 22.19 0.24 -4.32 16 24 C -0.23 -3.87 10.91 22.19 0.24 -3.62 16 25 C -0.04 -0.65 12.09 66.97 0.81 0.16 16 26 O -0.19 -3.99 10.65 -2.49 -0.03 -4.02 16 27 C 0.14 6.33 6.00 86.50 0.52 6.85 16 28 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 29 H -0.01 -0.63 7.12 -2.38 -0.02 -0.65 16 30 H 0.09 5.10 5.45 -2.39 -0.01 5.09 16 31 H 0.06 1.78 7.17 -2.39 -0.02 1.77 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 2.23 6.69 -2.39 -0.02 2.21 16 36 H 0.06 1.92 7.18 -2.39 -0.02 1.91 16 37 H 0.41 9.84 8.28 -92.70 -0.77 9.08 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 41 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 42 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 44 H 0.24 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.01 0.46 7.13 -2.39 -0.02 0.44 16 46 H 0.03 1.43 6.73 -2.38 -0.02 1.41 16 Total: -1.00 -72.52 363.55 3.16 -69.36 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.22 Total: 24.41 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.30 Total: -3.25 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -4.32 Total: -113.43 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.07 Total: -25.17 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.52 3.16 -69.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111588763.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.423 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds