Wall clock time and date at job start Tue Mar 31 2020 12:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47430 * 270.00012 * 3 2 1 5 5 H 1.48501 * 109.46591 * 29.99903 * 3 2 1 6 6 H 1.48494 * 109.47384 * 149.99585 * 3 2 1 7 7 C 1.38817 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99492 * 359.71891 * 7 2 1 9 9 N 1.36939 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00009 * 174.04157 * 9 7 2 11 11 C 1.52998 * 109.47273 * 63.95931 * 10 9 7 12 12 N 1.46507 * 109.47047 * 55.70449 * 11 10 9 13 13 C 1.34774 * 120.00241 * 174.97835 * 12 11 10 14 14 O 1.21778 * 119.99843 * 359.97438 * 13 12 11 15 15 C 1.41553 * 119.99712 * 179.97438 * 13 12 11 16 16 C 1.35631 * 119.99538 * 174.27778 * 15 13 12 17 17 C 1.41610 * 120.00281 * 350.94819 * 16 15 13 18 18 C 1.37944 * 126.10479 * 131.30394 * 17 16 15 19 19 C 1.40318 * 106.53017 * 179.85588 * 18 17 16 20 20 C 1.35154 * 107.20390 * 0.40562 * 19 18 17 21 21 O 1.34021 * 109.03213 * 359.74675 * 20 19 18 22 22 C 1.53003 * 109.47121 * 303.96475 * 10 9 7 23 23 C 1.53005 * 109.47054 * 299.99826 * 22 10 9 24 24 C 1.53003 * 109.47138 * 300.00317 * 23 22 10 25 25 C 1.53000 * 109.47032 * 59.99357 * 24 23 22 26 26 C 1.52997 * 109.47572 * 300.00103 * 25 24 23 27 27 H 0.96994 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.96994 * 119.99584 * 354.03579 * 9 7 2 29 29 H 1.09002 * 109.47488 * 175.69492 * 11 10 9 30 30 H 1.08995 * 109.47428 * 295.70235 * 11 10 9 31 31 H 0.96997 * 119.99762 * 354.97078 * 12 11 10 32 32 H 1.07994 * 120.00368 * 354.27129 * 15 13 12 33 33 H 1.07998 * 119.99915 * 170.95360 * 16 15 13 34 34 H 1.07998 * 126.73249 * 0.02562 * 18 17 16 35 35 H 1.07996 * 126.39742 * 180.17483 * 19 18 17 36 36 H 1.07995 * 125.48098 * 179.71933 * 20 19 18 37 37 H 1.08998 * 109.47472 * 59.99713 * 22 10 9 38 38 H 1.09004 * 109.47295 * 180.02562 * 22 10 9 39 39 H 1.08993 * 109.47389 * 180.02562 * 23 22 10 40 40 H 1.09004 * 109.46621 * 60.00136 * 23 22 10 41 41 H 1.09001 * 109.46965 * 299.99916 * 24 23 22 42 42 H 1.08991 * 109.47106 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.46787 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46790 * 60.00451 * 25 24 23 45 45 H 1.08991 * 109.47193 * 300.00070 * 26 25 24 46 46 H 1.09002 * 109.46739 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 0.0036 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4639 0.1311 11 6 3.8193 -3.3519 -1.0799 12 7 4.1485 -2.6257 -2.3090 13 6 4.0667 -3.2478 -3.5017 14 8 3.7197 -4.4137 -3.5578 15 6 4.3843 -2.5458 -4.6892 16 6 4.4149 -3.2008 -5.8765 17 6 4.3199 -4.6134 -5.9086 18 6 3.4795 -5.3535 -6.7140 19 6 3.7247 -6.7022 -6.4144 20 6 4.6755 -6.7319 -5.4544 21 8 5.0312 -5.4755 -5.1525 22 6 3.6688 -3.1807 1.4081 23 6 3.9616 -2.2928 2.6192 24 6 5.4629 -2.0060 2.6903 25 6 5.9062 -1.2894 1.4133 26 6 5.6134 -2.1773 0.2022 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3665 -0.0865 29 1 4.4226 -4.2578 -1.0207 30 1 2.7626 -3.6189 -1.0876 31 1 4.4251 -1.6971 -2.2642 32 1 4.6021 -1.4888 -4.6499 33 1 4.5118 -2.6451 -6.7974 34 1 2.7735 -4.9701 -7.4358 35 1 3.2410 -7.5567 -6.8640 36 1 5.0828 -7.6244 -5.0029 37 1 2.5993 -3.3849 1.3575 38 1 4.2141 -4.1194 1.5059 39 1 3.6462 -2.8035 3.5290 40 1 3.4166 -1.3539 2.5216 41 1 6.0079 -2.9449 2.7879 42 1 5.6715 -1.3739 3.5533 43 1 6.9756 -1.0847 1.4641 44 1 5.3612 -0.3505 1.3157 45 1 6.1583 -3.1162 0.2998 46 1 5.9288 -1.6665 -0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115384778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:11 Heat of formation + Delta-G solvation = 7.261235 kcal Electronic energy + Delta-G solvation = -27582.623437 eV Core-core repulsion = 23860.592677 eV Total energy + Delta-G solvation = -3722.030760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23033 -39.69492 -38.59762 -34.66353 -33.84342 -33.28484 -32.66343 -31.35524 -30.34346 -29.40821 -28.52476 -25.75363 -23.49257 -23.38908 -22.15711 -21.49555 -20.94009 -20.30506 -19.33983 -18.30234 -17.77832 -17.66983 -16.37535 -15.79574 -15.47341 -15.06007 -14.79271 -14.45791 -14.27286 -13.99884 -13.81542 -13.50345 -13.45007 -12.88315 -12.70469 -12.62237 -12.43022 -12.31323 -12.23050 -12.04746 -11.91170 -11.65781 -11.24806 -11.00212 -10.84386 -10.61267 -10.29712 -10.06004 -9.94783 -9.86533 -9.67143 -9.65620 -9.52929 -9.35582 -8.90956 -8.41491 -7.84738 -7.32069 -5.78804 -3.15826 0.77198 2.19578 2.81787 3.31095 3.33182 3.33259 3.41423 3.73450 3.85797 4.54549 4.84508 5.02742 5.05552 5.14651 5.15975 5.16863 5.22580 5.34501 5.44074 5.52118 5.63282 5.72994 5.83945 5.85528 5.87883 5.93018 6.01730 6.06469 6.08208 6.08856 6.14410 6.22434 6.34255 6.37420 6.46573 6.53195 6.61472 6.67438 6.72862 6.73847 6.95419 7.04797 7.10353 7.33322 7.96554 8.04789 8.39668 8.70664 9.16778 9.88382 10.07752 11.39341 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.004004 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.051476 B = 6991.661073 C = 8010.671623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.876 3.124 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.234 4.234 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.197 3.803 11 C 0.118 3.882 12 N -0.697 5.697 13 C 0.531 3.469 14 O -0.539 6.539 15 C -0.182 4.182 16 C -0.016 4.016 17 C 0.027 3.973 18 C -0.193 4.193 19 C -0.221 4.221 20 C -0.027 4.027 21 O -0.141 6.141 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.117 4.117 27 H 0.258 0.742 28 H 0.360 0.640 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.399 0.601 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.803 -7.101 -7.376 17.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.187 4.187 3 Si 0.707 3.293 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.364 4.364 8 H 0.108 0.892 9 N -0.379 5.379 10 C 0.106 3.894 11 C -0.008 4.008 12 N -0.346 5.346 13 C 0.319 3.681 14 O -0.419 6.419 15 C -0.203 4.203 16 C -0.036 4.036 17 C -0.024 4.024 18 C -0.212 4.212 19 C -0.240 4.240 20 C -0.097 4.097 21 O -0.035 6.035 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.155 4.155 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.234 0.766 32 H 0.154 0.846 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.212 0.788 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.518 -7.871 -7.123 17.188 hybrid contribution 0.252 1.727 -0.040 1.746 sum 13.770 -6.144 -7.164 16.694 Atomic orbital electron populations 1.69688 1.05117 1.25659 1.57452 1.24646 0.95061 0.96868 1.02163 0.86693 0.79406 0.85599 0.77615 1.21341 1.21981 1.20163 1.18931 0.80396 0.94486 1.42595 0.89155 1.42802 1.03985 1.02250 1.88868 1.19779 0.90108 0.87469 0.92047 1.21814 1.00881 0.94117 0.83993 1.45708 1.67304 1.15619 1.05969 1.17068 0.79465 0.87144 0.84382 1.90827 1.47832 1.16505 1.86756 1.22467 1.02886 1.01457 0.93466 1.20541 0.95585 0.89120 0.98323 1.19525 0.98243 0.90664 0.93957 1.22032 1.02759 0.92972 1.03447 1.21561 1.02320 0.97508 1.02610 1.23996 1.00301 0.85775 0.99643 1.84170 1.52968 1.15425 1.50930 1.21757 1.01832 0.96865 0.94873 1.21373 0.95038 1.01517 0.96794 1.21495 0.97230 0.99467 0.96974 1.21493 0.99581 0.99466 0.94884 1.21732 0.96105 0.99809 0.97820 0.93142 0.80612 0.92693 0.91410 0.76606 0.84629 0.83081 0.83713 0.83900 0.78792 0.91147 0.93486 0.93397 0.90216 0.92915 0.92978 0.93052 0.91530 0.91787 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.97 55.49 0.78 -27.48 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 20.77 27.68 -169.99 -4.71 16.06 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.06 6.61 56.52 0.37 -5.69 16 7 C -0.23 -5.98 9.16 -15.06 -0.14 -6.12 16 8 H 0.09 2.57 6.99 -52.49 -0.37 2.21 16 9 N -0.74 -15.07 3.21 -47.24 -0.15 -15.23 16 10 C 0.20 3.38 0.41 -131.82 -0.05 3.33 16 11 C 0.12 2.13 4.41 -4.04 -0.02 2.11 16 12 N -0.70 -11.77 5.06 -63.24 -0.32 -12.09 16 13 C 0.53 9.24 7.41 -15.00 -0.11 9.13 16 14 O -0.54 -11.00 12.78 -18.79 -0.24 -11.24 16 15 C -0.18 -2.47 9.85 -39.25 -0.39 -2.85 16 16 C -0.02 -0.19 9.95 -39.23 -0.39 -0.58 16 17 C 0.03 0.39 4.96 -38.40 -0.19 0.20 16 18 C -0.19 -2.62 10.90 -38.91 -0.42 -3.04 16 19 C -0.22 -2.81 10.87 -39.90 -0.43 -3.25 16 20 C -0.03 -0.36 12.06 29.63 0.36 0.00 16 21 O -0.14 -2.24 8.51 -19.23 -0.16 -2.40 16 22 C -0.11 -1.94 4.50 -26.73 -0.12 -2.06 16 23 C -0.11 -1.80 5.77 -26.73 -0.15 -1.95 16 24 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 25 C -0.12 -1.64 5.75 -26.73 -0.15 -1.80 16 26 C -0.12 -1.67 4.64 -26.73 -0.12 -1.79 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.36 7.33 4.60 -40.82 -0.19 7.14 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.45 7.53 -51.93 -0.39 1.06 16 31 H 0.40 6.24 7.35 -40.82 -0.30 5.94 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.00 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 35 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.07 1.38 7.17 -51.93 -0.37 1.00 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.07 6.94 -51.93 -0.36 0.71 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.78 7.24 -51.93 -0.38 0.40 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -32.64 365.06 -8.88 -41.53 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -6.98 Total: 15.64 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -2.59 Total: -10.29 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.30 Total: -54.80 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.40 Total: -13.64 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.71 Total: 16.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.64 -8.88 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115384778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.789 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds