Wall clock time and date at job start Tue Mar 31 2020 12:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47430 * 270.00012 * 3 2 1 5 5 H 1.48501 * 109.46591 * 29.99903 * 3 2 1 6 6 H 1.48494 * 109.47384 * 149.99585 * 3 2 1 7 7 C 1.38817 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99492 * 359.71891 * 7 2 1 9 9 N 1.36939 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.46490 * 120.00009 * 174.04157 * 9 7 2 11 11 C 1.52998 * 109.47273 * 63.95931 * 10 9 7 12 12 N 1.46507 * 109.47047 * 55.70449 * 11 10 9 13 13 C 1.34774 * 120.00241 * 174.97835 * 12 11 10 14 14 O 1.21778 * 119.99843 * 359.97438 * 13 12 11 15 15 C 1.41553 * 119.99712 * 179.97438 * 13 12 11 16 16 C 1.35631 * 119.99538 * 174.27778 * 15 13 12 17 17 C 1.41610 * 120.00281 * 350.94819 * 16 15 13 18 18 C 1.37944 * 126.10479 * 131.30394 * 17 16 15 19 19 C 1.40318 * 106.53017 * 179.85588 * 18 17 16 20 20 C 1.35154 * 107.20390 * 0.40562 * 19 18 17 21 21 O 1.34021 * 109.03213 * 359.74675 * 20 19 18 22 22 C 1.53003 * 109.47121 * 303.96475 * 10 9 7 23 23 C 1.53005 * 109.47054 * 299.99826 * 22 10 9 24 24 C 1.53003 * 109.47138 * 300.00317 * 23 22 10 25 25 C 1.53000 * 109.47032 * 59.99357 * 24 23 22 26 26 C 1.52997 * 109.47572 * 300.00103 * 25 24 23 27 27 H 0.96994 * 120.00423 * 0.02562 * 1 2 3 28 28 H 0.96994 * 119.99584 * 354.03579 * 9 7 2 29 29 H 1.09002 * 109.47488 * 175.69492 * 11 10 9 30 30 H 1.08995 * 109.47428 * 295.70235 * 11 10 9 31 31 H 0.96997 * 119.99762 * 354.97078 * 12 11 10 32 32 H 1.07994 * 120.00368 * 354.27129 * 15 13 12 33 33 H 1.07998 * 119.99915 * 170.95360 * 16 15 13 34 34 H 1.07998 * 126.73249 * 0.02562 * 18 17 16 35 35 H 1.07996 * 126.39742 * 180.17483 * 19 18 17 36 36 H 1.07995 * 125.48098 * 179.71933 * 20 19 18 37 37 H 1.08998 * 109.47472 * 59.99713 * 22 10 9 38 38 H 1.09004 * 109.47295 * 180.02562 * 22 10 9 39 39 H 1.08993 * 109.47389 * 180.02562 * 23 22 10 40 40 H 1.09004 * 109.46621 * 60.00136 * 23 22 10 41 41 H 1.09001 * 109.46965 * 299.99916 * 24 23 22 42 42 H 1.08991 * 109.47106 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.46787 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46790 * 60.00451 * 25 24 23 45 45 H 1.08991 * 109.47193 * 300.00070 * 26 25 24 46 46 H 1.09002 * 109.46739 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 0.0036 9 7 3.3797 -1.2021 0.0000 10 6 4.1122 -2.4639 0.1311 11 6 3.8193 -3.3519 -1.0799 12 7 4.1485 -2.6257 -2.3090 13 6 4.0667 -3.2478 -3.5017 14 8 3.7197 -4.4137 -3.5578 15 6 4.3843 -2.5458 -4.6892 16 6 4.4149 -3.2008 -5.8765 17 6 4.3199 -4.6134 -5.9086 18 6 3.4795 -5.3535 -6.7140 19 6 3.7247 -6.7022 -6.4144 20 6 4.6755 -6.7319 -5.4544 21 8 5.0312 -5.4755 -5.1525 22 6 3.6688 -3.1807 1.4081 23 6 3.9616 -2.2928 2.6192 24 6 5.4629 -2.0060 2.6903 25 6 5.9062 -1.2894 1.4133 26 6 5.6134 -2.1773 0.2022 27 1 -0.4850 0.8400 -0.0004 28 1 3.8646 -0.3665 -0.0865 29 1 4.4226 -4.2578 -1.0207 30 1 2.7626 -3.6189 -1.0876 31 1 4.4251 -1.6971 -2.2642 32 1 4.6021 -1.4888 -4.6499 33 1 4.5118 -2.6451 -6.7974 34 1 2.7735 -4.9701 -7.4358 35 1 3.2410 -7.5567 -6.8640 36 1 5.0828 -7.6244 -5.0029 37 1 2.5993 -3.3849 1.3575 38 1 4.2141 -4.1194 1.5059 39 1 3.6462 -2.8035 3.5290 40 1 3.4166 -1.3539 2.5216 41 1 6.0079 -2.9449 2.7879 42 1 5.6715 -1.3739 3.5533 43 1 6.9756 -1.0847 1.4641 44 1 5.3612 -0.3505 1.3157 45 1 6.1583 -3.1162 0.2998 46 1 5.9288 -1.6665 -0.7075 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115384778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:10 Heat of formation + Delta-G solvation = -12.765691 kcal Electronic energy + Delta-G solvation = -27583.491870 eV Core-core repulsion = 23860.592677 eV Total energy + Delta-G solvation = -3722.899193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.26366 -41.06792 -39.95172 -35.99047 -35.17077 -34.88182 -33.69541 -33.09576 -31.61377 -31.00830 -29.64690 -27.03015 -25.41638 -24.54559 -23.43292 -22.52185 -22.08644 -21.62977 -20.52263 -19.76558 -19.68855 -18.83873 -17.51588 -16.93908 -16.78536 -16.48415 -16.28296 -16.05907 -15.62454 -15.24129 -15.03467 -14.88384 -14.75029 -14.29290 -14.05740 -13.94290 -13.70061 -13.61779 -13.39039 -13.30852 -13.17108 -12.95327 -12.81468 -12.67565 -12.38152 -12.09380 -11.91202 -11.68436 -11.33966 -11.18073 -11.06818 -10.88479 -10.75773 -10.72939 -10.65787 -9.85194 -9.24723 -8.88927 -7.93035 -5.26578 -0.26875 1.15976 1.40015 1.43990 1.51441 1.80496 2.28445 2.54131 2.54461 2.59411 3.37194 3.54889 3.88149 3.89140 3.93526 4.05175 4.08929 4.19939 4.26176 4.35377 4.43604 4.51670 4.61721 4.70602 4.70941 4.75902 4.83201 4.89244 4.90614 4.93845 5.03992 5.09460 5.14690 5.17311 5.20431 5.40204 5.41328 5.42174 5.47407 5.55795 5.65676 5.71542 5.73121 5.89434 6.30048 6.31216 6.72567 7.17097 7.38649 7.89991 8.11620 9.29167 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.004004 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.051476 B = 6991.661073 C = 8010.671623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.990 5.990 2 C -0.065 4.065 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.310 1.310 6 H -0.245 1.245 7 C -0.198 4.198 8 H 0.047 0.953 9 N -0.729 5.729 10 C 0.196 3.804 11 C 0.129 3.871 12 N -0.695 5.695 13 C 0.523 3.477 14 O -0.578 6.578 15 C -0.206 4.206 16 C 0.004 3.996 17 C -0.005 4.005 18 C -0.202 4.202 19 C -0.231 4.231 20 C -0.040 4.040 21 O -0.166 6.166 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.110 4.110 27 H 0.252 0.748 28 H 0.367 0.633 29 H 0.063 0.937 30 H 0.020 0.980 31 H 0.407 0.593 32 H 0.168 0.832 33 H 0.197 0.803 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.224 0.776 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.084 0.916 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.441 -6.587 -8.125 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.642 5.642 2 C -0.255 4.255 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.238 1.238 6 H -0.169 1.169 7 C -0.330 4.330 8 H 0.065 0.935 9 N -0.372 5.372 10 C 0.106 3.894 11 C 0.002 3.998 12 N -0.345 5.345 13 C 0.314 3.686 14 O -0.461 6.461 15 C -0.227 4.227 16 C -0.015 4.015 17 C -0.055 4.055 18 C -0.221 4.221 19 C -0.250 4.250 20 C -0.109 4.109 21 O -0.060 6.060 22 C -0.153 4.153 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.148 4.148 27 H 0.061 0.939 28 H 0.202 0.798 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.243 0.757 32 H 0.186 0.814 33 H 0.213 0.787 34 H 0.181 0.819 35 H 0.184 0.816 36 H 0.240 0.760 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 17.231 -7.369 -7.874 20.328 hybrid contribution -0.926 1.308 0.149 1.609 sum 16.305 -6.061 -7.726 19.034 Atomic orbital electron populations 1.69901 1.07425 1.26132 1.60745 1.25404 0.95778 1.00878 1.03454 0.85539 0.78913 0.80048 0.78007 1.20389 1.23763 1.16874 1.18706 0.82535 0.92503 1.39215 0.93526 1.42676 1.02067 1.03979 1.88527 1.19979 0.92330 0.85688 0.91407 1.21580 0.98095 0.94958 0.85149 1.45678 1.67327 1.15884 1.05624 1.17757 0.78548 0.86914 0.85426 1.90803 1.49632 1.18286 1.87358 1.22530 1.05254 1.02868 0.92017 1.21151 0.92377 0.88324 0.99666 1.20127 0.99151 0.91861 0.94399 1.22447 1.02703 0.93475 1.03487 1.21961 1.02290 0.98125 1.02599 1.24722 1.00438 0.85952 0.99739 1.84147 1.53744 1.16478 1.51658 1.21740 0.99670 0.98406 0.95470 1.21328 0.97207 0.99432 0.96587 1.21475 0.94704 1.00860 0.97606 1.21502 1.01220 0.98212 0.94346 1.21707 0.92878 1.01245 0.98933 0.93899 0.79846 0.91857 0.96178 0.75718 0.81440 0.78654 0.81872 0.81559 0.75969 0.95173 0.90910 0.92588 0.93875 0.90743 0.91748 0.89948 0.93524 0.89735 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.09 13.97 21.65 0.30 -62.79 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.95 43.30 27.68 68.60 1.90 45.20 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.31 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.24 -9.80 6.61 99.48 0.66 -9.14 16 7 C -0.20 -10.54 9.16 84.03 0.77 -9.77 16 8 H 0.05 2.87 6.99 -2.91 -0.02 2.85 16 9 N -0.73 -29.78 3.21 -303.36 -0.97 -30.76 16 10 C 0.20 6.61 0.41 3.60 0.00 6.61 16 11 C 0.13 4.73 4.41 86.38 0.38 5.11 16 12 N -0.70 -23.26 5.06 -472.18 -2.39 -25.66 16 13 C 0.52 18.11 7.41 85.06 0.63 18.74 16 14 O -0.58 -24.06 12.78 18.26 0.23 -23.83 16 15 C -0.21 -5.24 9.85 22.48 0.22 -5.02 16 16 C 0.00 0.10 9.95 22.50 0.22 0.32 16 17 C -0.01 -0.16 4.96 23.03 0.11 -0.04 16 18 C -0.20 -5.25 10.90 22.71 0.25 -5.00 16 19 C -0.23 -5.62 10.87 22.06 0.24 -5.38 16 20 C -0.04 -1.01 12.06 67.11 0.81 -0.20 16 21 O -0.17 -5.18 8.51 16.71 0.14 -5.04 16 22 C -0.11 -3.88 4.50 30.60 0.14 -3.74 16 23 C -0.11 -3.44 5.77 30.60 0.18 -3.27 16 24 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 25 C -0.12 -2.78 5.75 30.59 0.18 -2.60 16 26 C -0.11 -2.77 4.64 30.59 0.14 -2.63 16 27 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 28 H 0.37 14.26 4.60 -92.71 -0.43 13.84 16 29 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.02 0.91 7.53 -2.39 -0.02 0.90 16 31 H 0.41 12.14 7.35 -92.71 -0.68 11.46 16 32 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.20 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 35 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.22 3.88 8.06 -2.91 -0.02 3.86 16 37 H 0.03 1.25 7.17 -2.39 -0.02 1.23 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.68 7.58 -2.39 -0.02 1.67 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.32 6.94 -2.39 -0.02 1.31 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.64 7.24 -2.39 -0.02 1.62 16 Total: -1.00 -76.77 365.06 3.96 -72.81 By element: Atomic # 1 Polarization: 42.77 SS G_CDS: -0.17 Total: 42.61 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.92 Total: -12.55 kcal Atomic # 7 Polarization: -116.14 SS G_CDS: -3.06 Total: -119.20 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: 0.38 Total: -28.87 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.90 Total: 45.20 kcal Total: -76.77 3.96 -72.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115384778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.041 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds