Wall clock time and date at job start Tue Mar 31 2020 12:39:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38236 * 119.99751 * 2 1
4 4 C 1.38241 * 120.00004 * 179.97438 * 3 2 1
5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2
6 6 C 1.38233 * 119.99465 * 359.97181 * 4 3 2
7 7 C 1.50703 * 119.99520 * 180.02562 * 6 4 3
8 8 N 1.46506 * 109.47289 * 90.00180 * 7 6 4
9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6
10 10 O 1.21345 * 120.00130 * 359.97438 * 9 8 7
11 11 C 1.49446 * 119.99676 * 180.02562 * 9 8 7
12 12 O 1.21350 * 120.00601 * 359.97438 * 11 9 8
13 13 N 1.34784 * 119.99947 * 180.02562 * 11 9 8
14 14 C 1.46496 * 120.00155 * 180.02562 * 13 11 9
15 15 C 1.53002 * 109.47045 * 179.97438 * 14 13 11
16 16 C 1.50706 * 109.46663 * 179.97438 * 15 14 13
17 17 H 1.07995 * 120.00169 * 359.97438 * 16 15 14
18 18 C 1.37878 * 119.99479 * 179.97438 * 16 15 14
19 19 N 1.31515 * 120.00437 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 119.99864 * 180.02562 * 18 16 15
21 21 H 1.48499 * 109.47293 * 89.99982 * 20 18 16
22 22 H 1.48504 * 109.47104 * 210.00228 * 20 18 16
23 23 H 1.48504 * 109.47118 * 329.99979 * 20 18 16
24 24 C 1.38228 * 120.00467 * 0.28169 * 6 4 3
25 25 C 1.50700 * 120.00150 * 179.72567 * 24 6 4
26 26 C 1.38227 * 120.00317 * 179.97438 * 2 1 3
27 27 H 1.09002 * 109.46972 * 90.00284 * 1 2 3
28 28 H 1.09000 * 109.46874 * 209.99878 * 1 2 3
29 29 H 1.08996 * 109.47230 * 330.00434 * 1 2 3
30 30 H 1.07997 * 120.00219 * 359.97438 * 3 2 1
31 31 H 1.09003 * 109.47047 * 269.97312 * 5 4 3
32 32 H 1.09001 * 109.47138 * 29.96769 * 5 4 3
33 33 H 1.08997 * 109.47438 * 149.97056 * 5 4 3
34 34 H 1.09001 * 109.47438 * 329.99961 * 7 6 4
35 35 H 1.09004 * 109.47113 * 210.00217 * 7 6 4
36 36 H 0.97001 * 119.99251 * 0.02562 * 8 7 6
37 37 H 0.97002 * 119.99745 * 359.97438 * 13 11 9
38 38 H 1.09004 * 109.46875 * 299.99418 * 14 13 11
39 39 H 1.09001 * 109.47445 * 59.99021 * 14 13 11
40 40 H 1.08993 * 109.46940 * 299.99120 * 15 14 13
41 41 H 1.08998 * 109.47387 * 60.00088 * 15 14 13
42 42 H 0.96999 * 120.00397 * 179.97438 * 19 18 16
43 43 H 1.09004 * 109.47244 * 90.00097 * 25 24 6
44 44 H 1.08996 * 109.47283 * 209.99744 * 25 24 6
45 45 H 1.08998 * 109.47313 * 329.99935 * 25 24 6
46 46 H 1.08009 * 120.00051 * 359.97438 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1981 1.1972 0.0000
4 6 3.5805 1.1973 0.0005
5 6 4.3340 2.5023 0.0011
6 6 4.2716 0.0001 0.0017
7 6 5.7787 0.0001 0.0028
8 7 6.2660 0.0008 1.3845
9 6 7.5909 0.0004 1.6317
10 8 8.3801 -0.0009 0.7100
11 6 8.0879 0.0005 3.0411
12 8 7.2986 0.0014 3.9629
13 7 9.4128 0.0007 3.2885
14 6 9.9001 0.0002 4.6700
15 6 11.4301 -0.0001 4.6712
16 6 11.9312 0.0000 6.0925
17 1 11.2288 0.0007 6.9128
18 6 13.2866 -0.0008 6.3455
19 7 14.1421 -0.0012 5.3466
20 14 13.9079 -0.0013 8.1071
21 1 14.0718 -1.4015 8.5738
22 1 15.2164 0.6980 8.1708
23 1 12.9294 0.6992 8.9773
24 6 3.5806 -1.1970 -0.0036
25 6 4.3341 -2.5021 -0.0087
26 6 2.1982 -1.1970 0.0005
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3633 -0.8900 0.5138
29 1 -0.3633 0.8900 0.5137
30 1 1.6581 2.1325 -0.0004
31 1 4.5165 2.8170 -1.0264
32 1 3.7445 3.2620 0.5144
33 1 5.2860 2.3721 0.5157
34 1 6.1424 0.8899 -0.5112
35 1 6.1425 -0.8901 -0.5103
36 1 5.6350 0.0007 2.1212
37 1 10.0437 0.0004 2.5517
38 1 9.5362 0.8900 5.1839
39 1 9.5364 -0.8900 5.1833
40 1 11.7935 -0.8901 4.1576
41 1 11.7940 0.8899 4.1579
42 1 15.0956 -0.0013 5.5245
43 1 4.5152 -2.8210 1.0178
44 1 3.7453 -3.2596 -0.5259
45 1 5.2867 -2.3697 -0.5215
46 1 1.6582 -2.1325 0.0014
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001117168246.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:39:34
Heat of formation + Delta-G solvation = -72.855077 kcal
Electronic energy + Delta-G solvation = -25496.835201 eV
Core-core repulsion = 21771.330337 eV
Total energy + Delta-G solvation = -3725.504864 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-40.71618 -39.98719 -38.23200 -35.83123 -34.98604 -33.95181 -33.34625 -32.80274
-29.83035 -28.96029 -28.26909 -27.06163 -25.91330 -24.72031 -22.99577 -21.13715
-21.02680 -20.47969 -20.14563 -18.37410 -16.84278 -16.77149 -16.30107 -16.08005
-15.66440 -15.27591 -14.77705 -14.60812 -14.49950 -14.38297 -14.25533 -13.58619
-13.52323 -13.41314 -13.39929 -13.24522 -13.00659 -12.88947 -12.86861 -12.39548
-12.32214 -11.95909 -11.62068 -11.47339 -11.25242 -11.23200 -11.15344 -11.06048
-10.66559 -10.39422 -9.80392 -9.47085 -9.32517 -9.23657 -8.87468 -8.80257
-8.68694 -8.41472 -6.09931 -4.13585 0.85695 1.04034 1.62886 2.60203
3.29125 3.33986 3.35704 3.39489 3.44478 3.99841 4.27291 4.37496
4.40813 4.45695 4.55026 4.76392 4.78592 4.93127 5.05825 5.12886
5.19322 5.19783 5.24227 5.26888 5.33116 5.37005 5.45570 5.48452
5.58282 5.61628 5.88095 5.93180 6.09079 6.15642 6.18880 6.22512
6.24405 6.33033 6.60509 6.67497 6.70153 7.08229 7.47398 7.58263
7.67867 7.87429 7.93904 8.21868 8.35178 8.92010 9.51259 11.01496
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.027939 B = 0.002005 C = 0.001998
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1001.936231 B =13958.794870 C =14009.756263
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.070 4.070
3 C -0.131 4.131
4 C -0.053 4.053
5 C -0.123 4.123
6 C -0.121 4.121
7 C 0.157 3.843
8 N -0.699 5.699
9 C 0.507 3.493
10 O -0.520 6.520
11 C 0.497 3.503
12 O -0.533 6.533
13 N -0.686 5.686
14 C 0.119 3.881
15 C 0.011 3.989
16 C -0.523 4.523
17 H 0.060 0.940
18 C 0.059 3.941
19 N -0.892 5.892
20 Si 0.898 3.102
21 H -0.280 1.280
22 H -0.286 1.286
23 H -0.273 1.273
24 C -0.054 4.054
25 C -0.124 4.124
26 C -0.131 4.131
27 H 0.071 0.929
28 H 0.067 0.933
29 H 0.067 0.933
30 H 0.123 0.877
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.072 0.928
34 H 0.081 0.919
35 H 0.083 0.917
36 H 0.413 0.587
37 H 0.410 0.590
38 H 0.063 0.937
39 H 0.063 0.937
40 H 0.025 0.975
41 H 0.025 0.975
42 H 0.263 0.737
43 H 0.075 0.925
44 H 0.068 0.932
45 H 0.072 0.928
46 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.324 -0.005 -14.896 30.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.172 4.172
2 C -0.070 4.070
3 C -0.149 4.149
4 C -0.054 4.054
5 C -0.180 4.180
6 C -0.121 4.121
7 C 0.034 3.966
8 N -0.353 5.353
9 C 0.288 3.712
10 O -0.396 6.396
11 C 0.276 3.724
12 O -0.411 6.411
13 N -0.337 5.337
14 C -0.003 4.003
15 C -0.027 4.027
16 C -0.562 4.562
17 H 0.078 0.922
18 C -0.143 4.143
19 N -0.530 5.530
20 Si 0.726 3.274
21 H -0.206 1.206
22 H -0.212 1.212
23 H -0.197 1.197
24 C -0.054 4.054
25 C -0.180 4.180
26 C -0.149 4.149
27 H 0.089 0.911
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.141 0.859
31 H 0.093 0.907
32 H 0.088 0.912
33 H 0.091 0.909
34 H 0.099 0.901
35 H 0.101 0.899
36 H 0.250 0.750
37 H 0.246 0.754
38 H 0.081 0.919
39 H 0.081 0.919
40 H 0.043 0.957
41 H 0.044 0.956
42 H 0.072 0.928
43 H 0.094 0.906
44 H 0.087 0.913
45 H 0.091 0.909
46 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -26.079 0.001 -14.929 30.050
hybrid contribution 0.376 -0.012 0.875 0.952
sum -25.703 -0.012 -14.055 29.294
Atomic orbital electron populations
1.20814 0.91107 1.02936 1.02388 1.19941 0.96082 0.93081 0.97908
1.20885 0.93281 0.97676 1.03054 1.19797 0.93692 0.94739 0.97164
1.20914 1.00500 0.93867 1.02709 1.19486 0.94366 0.92659 1.05585
1.20300 0.89483 1.03609 0.83181 1.45817 1.06723 1.73655 1.09151
1.20478 0.83030 0.77458 0.90209 1.90758 1.55140 1.47778 1.45889
1.19976 0.84257 0.79420 0.88705 1.90734 1.55276 1.49604 1.45491
1.46233 1.05694 1.69921 1.11856 1.21932 0.98482 1.01320 0.78553
1.19359 0.86674 0.98255 0.98391 1.21013 0.91814 1.51709 0.91649
0.92167 1.25005 0.96908 0.94952 0.97442 1.69957 1.02201 1.50061
1.30828 0.86496 0.78226 0.78190 0.84531 1.20558 1.21155 1.19734
1.19791 0.93698 0.94753 0.97172 1.20937 1.00255 0.93791 1.03005
1.20880 0.93278 0.97676 1.03056 0.91061 0.91428 0.91427 0.85943
0.90742 0.91195 0.90917 0.90066 0.89888 0.75043 0.75388 0.91875
0.91888 0.95652 0.95645 0.92777 0.90594 0.91328 0.90887 0.85943
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16
2 C -0.07 -0.54 5.88 -104.63 -0.62 -1.16 16
3 C -0.13 -1.06 9.36 -39.58 -0.37 -1.43 16
4 C -0.05 -0.47 5.88 -104.62 -0.62 -1.08 16
5 C -0.12 -0.95 9.19 36.00 0.33 -0.62 16
6 C -0.12 -1.12 5.25 -104.63 -0.55 -1.66 16
7 C 0.16 1.57 4.59 -5.19 -0.02 1.55 16
8 N -0.70 -8.27 5.50 -61.90 -0.34 -8.61 16
9 C 0.51 7.57 7.89 -11.59 -0.09 7.48 16
10 O -0.52 -8.69 16.48 5.50 0.09 -8.60 16
11 C 0.50 8.59 7.89 -11.58 -0.09 8.50 16
12 O -0.53 -10.18 16.48 5.50 0.09 -10.09 16
13 N -0.69 -12.55 5.55 -60.73 -0.34 -12.89 16
14 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16
15 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16
16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16
17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16
18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16
19 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16
20 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16
21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16
24 C -0.05 -0.47 5.88 -104.63 -0.62 -1.08 16
25 C -0.12 -0.94 9.60 36.01 0.35 -0.59 16
26 C -0.13 -1.05 9.36 -39.59 -0.37 -1.42 16
27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16
28 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16
29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16
30 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16
31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16
33 H 0.07 0.64 6.66 -51.93 -0.35 0.29 16
34 H 0.08 0.81 6.70 -51.93 -0.35 0.47 16
35 H 0.08 0.83 5.94 -51.93 -0.31 0.52 16
36 H 0.41 4.75 7.94 -40.82 -0.32 4.43 16
37 H 0.41 7.15 7.94 -40.82 -0.32 6.83 16
38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16
41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16
42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
44 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16
45 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16
46 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16
LS Contribution 386.83 15.07 5.83 5.83
Total: -1.00 -31.44 386.83 -8.82 -40.25
By element:
Atomic # 1 Polarization: 12.53 SS G_CDS: -6.98 Total: 5.54 kcal
Atomic # 6 Polarization: 0.54 SS G_CDS: -2.88 Total: -2.34 kcal
Atomic # 7 Polarization: -46.92 SS G_CDS: 0.06 Total: -46.86 kcal
Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal
Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal
Total LS contribution 5.83 Total: 5.83 kcal
Total: -31.44 -8.82 -40.25 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001117168246.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.604 kcal
(2) G-P(sol) polarization free energy of solvation -31.435 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.039 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds