Wall clock time and date at job start Tue Mar 31 2020 12:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99751 * 2 1 4 4 C 1.38241 * 120.00004 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99465 * 359.97181 * 4 3 2 7 7 C 1.50703 * 119.99520 * 180.02562 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00180 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21345 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.49446 * 119.99676 * 180.02562 * 9 8 7 12 12 O 1.21350 * 120.00601 * 359.97438 * 11 9 8 13 13 N 1.34784 * 119.99947 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00155 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47045 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46663 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99479 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99864 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47293 * 89.99982 * 20 18 16 22 22 H 1.48504 * 109.47104 * 210.00228 * 20 18 16 23 23 H 1.48504 * 109.47118 * 329.99979 * 20 18 16 24 24 C 1.38228 * 120.00467 * 0.28169 * 6 4 3 25 25 C 1.50700 * 120.00150 * 179.72567 * 24 6 4 26 26 C 1.38227 * 120.00317 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46972 * 90.00284 * 1 2 3 28 28 H 1.09000 * 109.46874 * 209.99878 * 1 2 3 29 29 H 1.08996 * 109.47230 * 330.00434 * 1 2 3 30 30 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47047 * 269.97312 * 5 4 3 32 32 H 1.09001 * 109.47138 * 29.96769 * 5 4 3 33 33 H 1.08997 * 109.47438 * 149.97056 * 5 4 3 34 34 H 1.09001 * 109.47438 * 329.99961 * 7 6 4 35 35 H 1.09004 * 109.47113 * 210.00217 * 7 6 4 36 36 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 37 37 H 0.97002 * 119.99745 * 359.97438 * 13 11 9 38 38 H 1.09004 * 109.46875 * 299.99418 * 14 13 11 39 39 H 1.09001 * 109.47445 * 59.99021 * 14 13 11 40 40 H 1.08993 * 109.46940 * 299.99120 * 15 14 13 41 41 H 1.08998 * 109.47387 * 60.00088 * 15 14 13 42 42 H 0.96999 * 120.00397 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.47244 * 90.00097 * 25 24 6 44 44 H 1.08996 * 109.47283 * 209.99744 * 25 24 6 45 45 H 1.08998 * 109.47313 * 329.99935 * 25 24 6 46 46 H 1.08009 * 120.00051 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2716 0.0001 0.0017 7 6 5.7787 0.0001 0.0028 8 7 6.2660 0.0008 1.3845 9 6 7.5909 0.0004 1.6317 10 8 8.3801 -0.0009 0.7100 11 6 8.0879 0.0005 3.0411 12 8 7.2986 0.0014 3.9629 13 7 9.4128 0.0007 3.2885 14 6 9.9001 0.0002 4.6700 15 6 11.4301 -0.0001 4.6712 16 6 11.9312 0.0000 6.0925 17 1 11.2288 0.0007 6.9128 18 6 13.2866 -0.0008 6.3455 19 7 14.1421 -0.0012 5.3466 20 14 13.9079 -0.0013 8.1071 21 1 14.0718 -1.4015 8.5738 22 1 15.2164 0.6980 8.1708 23 1 12.9294 0.6992 8.9773 24 6 3.5806 -1.1970 -0.0036 25 6 4.3341 -2.5021 -0.0087 26 6 2.1982 -1.1970 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6581 2.1325 -0.0004 31 1 4.5165 2.8170 -1.0264 32 1 3.7445 3.2620 0.5144 33 1 5.2860 2.3721 0.5157 34 1 6.1424 0.8899 -0.5112 35 1 6.1425 -0.8901 -0.5103 36 1 5.6350 0.0007 2.1212 37 1 10.0437 0.0004 2.5517 38 1 9.5362 0.8900 5.1839 39 1 9.5364 -0.8900 5.1833 40 1 11.7935 -0.8901 4.1576 41 1 11.7940 0.8899 4.1579 42 1 15.0956 -0.0013 5.5245 43 1 4.5152 -2.8210 1.0178 44 1 3.7453 -3.2596 -0.5259 45 1 5.2867 -2.3697 -0.5215 46 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117168246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:34 Heat of formation + Delta-G solvation = -72.855077 kcal Electronic energy + Delta-G solvation = -25496.835201 eV Core-core repulsion = 21771.330337 eV Total energy + Delta-G solvation = -3725.504864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.71618 -39.98719 -38.23200 -35.83123 -34.98604 -33.95181 -33.34625 -32.80274 -29.83035 -28.96029 -28.26909 -27.06163 -25.91330 -24.72031 -22.99577 -21.13715 -21.02680 -20.47969 -20.14563 -18.37410 -16.84278 -16.77149 -16.30107 -16.08005 -15.66440 -15.27591 -14.77705 -14.60812 -14.49950 -14.38297 -14.25533 -13.58619 -13.52323 -13.41314 -13.39929 -13.24522 -13.00659 -12.88947 -12.86861 -12.39548 -12.32214 -11.95909 -11.62068 -11.47339 -11.25242 -11.23200 -11.15344 -11.06048 -10.66559 -10.39422 -9.80392 -9.47085 -9.32517 -9.23657 -8.87468 -8.80257 -8.68694 -8.41472 -6.09931 -4.13585 0.85695 1.04034 1.62886 2.60203 3.29125 3.33986 3.35704 3.39489 3.44478 3.99841 4.27291 4.37496 4.40813 4.45695 4.55026 4.76392 4.78592 4.93127 5.05825 5.12886 5.19322 5.19783 5.24227 5.26888 5.33116 5.37005 5.45570 5.48452 5.58282 5.61628 5.88095 5.93180 6.09079 6.15642 6.18880 6.22512 6.24405 6.33033 6.60509 6.67497 6.70153 7.08229 7.47398 7.58263 7.67867 7.87429 7.93904 8.21868 8.35178 8.92010 9.51259 11.01496 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002005 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.936231 B =13958.794870 C =14009.756263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 C -0.131 4.131 4 C -0.053 4.053 5 C -0.123 4.123 6 C -0.121 4.121 7 C 0.157 3.843 8 N -0.699 5.699 9 C 0.507 3.493 10 O -0.520 6.520 11 C 0.497 3.503 12 O -0.533 6.533 13 N -0.686 5.686 14 C 0.119 3.881 15 C 0.011 3.989 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.054 4.054 25 C -0.124 4.124 26 C -0.131 4.131 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.413 0.587 37 H 0.410 0.590 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.263 0.737 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.324 -0.005 -14.896 30.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.070 4.070 3 C -0.149 4.149 4 C -0.054 4.054 5 C -0.180 4.180 6 C -0.121 4.121 7 C 0.034 3.966 8 N -0.353 5.353 9 C 0.288 3.712 10 O -0.396 6.396 11 C 0.276 3.724 12 O -0.411 6.411 13 N -0.337 5.337 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.562 4.562 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.054 4.054 25 C -0.180 4.180 26 C -0.149 4.149 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.250 0.750 37 H 0.246 0.754 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -26.079 0.001 -14.929 30.050 hybrid contribution 0.376 -0.012 0.875 0.952 sum -25.703 -0.012 -14.055 29.294 Atomic orbital electron populations 1.20814 0.91107 1.02936 1.02388 1.19941 0.96082 0.93081 0.97908 1.20885 0.93281 0.97676 1.03054 1.19797 0.93692 0.94739 0.97164 1.20914 1.00500 0.93867 1.02709 1.19486 0.94366 0.92659 1.05585 1.20300 0.89483 1.03609 0.83181 1.45817 1.06723 1.73655 1.09151 1.20478 0.83030 0.77458 0.90209 1.90758 1.55140 1.47778 1.45889 1.19976 0.84257 0.79420 0.88705 1.90734 1.55276 1.49604 1.45491 1.46233 1.05694 1.69921 1.11856 1.21932 0.98482 1.01320 0.78553 1.19359 0.86674 0.98255 0.98391 1.21013 0.91814 1.51709 0.91649 0.92167 1.25005 0.96908 0.94952 0.97442 1.69957 1.02201 1.50061 1.30828 0.86496 0.78226 0.78190 0.84531 1.20558 1.21155 1.19734 1.19791 0.93698 0.94753 0.97172 1.20937 1.00255 0.93791 1.03005 1.20880 0.93278 0.97676 1.03056 0.91061 0.91428 0.91427 0.85943 0.90742 0.91195 0.90917 0.90066 0.89888 0.75043 0.75388 0.91875 0.91888 0.95652 0.95645 0.92777 0.90594 0.91328 0.90887 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.01 36.01 0.36 -0.26 16 2 C -0.07 -0.54 5.88 -104.63 -0.62 -1.16 16 3 C -0.13 -1.06 9.36 -39.58 -0.37 -1.43 16 4 C -0.05 -0.47 5.88 -104.62 -0.62 -1.08 16 5 C -0.12 -0.95 9.19 36.00 0.33 -0.62 16 6 C -0.12 -1.12 5.25 -104.63 -0.55 -1.66 16 7 C 0.16 1.57 4.59 -5.19 -0.02 1.55 16 8 N -0.70 -8.27 5.50 -61.90 -0.34 -8.61 16 9 C 0.51 7.57 7.89 -11.59 -0.09 7.48 16 10 O -0.52 -8.69 16.48 5.50 0.09 -8.60 16 11 C 0.50 8.59 7.89 -11.58 -0.09 8.50 16 12 O -0.53 -10.18 16.48 5.50 0.09 -10.09 16 13 N -0.69 -12.55 5.55 -60.73 -0.34 -12.89 16 14 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 15 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 16 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 20 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.05 -0.47 5.88 -104.63 -0.62 -1.08 16 25 C -0.12 -0.94 9.60 36.01 0.35 -0.59 16 26 C -0.13 -1.05 9.36 -39.59 -0.37 -1.42 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 30 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.07 0.64 6.66 -51.93 -0.35 0.29 16 34 H 0.08 0.81 6.70 -51.93 -0.35 0.47 16 35 H 0.08 0.83 5.94 -51.93 -0.31 0.52 16 36 H 0.41 4.75 7.94 -40.82 -0.32 4.43 16 37 H 0.41 7.15 7.94 -40.82 -0.32 6.83 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 45 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 386.83 15.07 5.83 5.83 Total: -1.00 -31.44 386.83 -8.82 -40.25 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.98 Total: 5.54 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -2.88 Total: -2.34 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.06 Total: -46.86 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: 0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.44 -8.82 -40.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117168246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.604 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds