Wall clock time and date at job start Tue Mar 31 2020 12:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 119.99751 * 2 1 4 4 C 1.38241 * 120.00004 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2 6 6 C 1.38233 * 119.99465 * 359.97181 * 4 3 2 7 7 C 1.50703 * 119.99520 * 180.02562 * 6 4 3 8 8 N 1.46506 * 109.47289 * 90.00180 * 7 6 4 9 9 C 1.34774 * 120.00072 * 179.97438 * 8 7 6 10 10 O 1.21345 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.49446 * 119.99676 * 180.02562 * 9 8 7 12 12 O 1.21350 * 120.00601 * 359.97438 * 11 9 8 13 13 N 1.34784 * 119.99947 * 180.02562 * 11 9 8 14 14 C 1.46496 * 120.00155 * 180.02562 * 13 11 9 15 15 C 1.53002 * 109.47045 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46663 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00169 * 359.97438 * 16 15 14 18 18 C 1.37878 * 119.99479 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00437 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99864 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47293 * 89.99982 * 20 18 16 22 22 H 1.48504 * 109.47104 * 210.00228 * 20 18 16 23 23 H 1.48504 * 109.47118 * 329.99979 * 20 18 16 24 24 C 1.38228 * 120.00467 * 0.28169 * 6 4 3 25 25 C 1.50700 * 120.00150 * 179.72567 * 24 6 4 26 26 C 1.38227 * 120.00317 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46972 * 90.00284 * 1 2 3 28 28 H 1.09000 * 109.46874 * 209.99878 * 1 2 3 29 29 H 1.08996 * 109.47230 * 330.00434 * 1 2 3 30 30 H 1.07997 * 120.00219 * 359.97438 * 3 2 1 31 31 H 1.09003 * 109.47047 * 269.97312 * 5 4 3 32 32 H 1.09001 * 109.47138 * 29.96769 * 5 4 3 33 33 H 1.08997 * 109.47438 * 149.97056 * 5 4 3 34 34 H 1.09001 * 109.47438 * 329.99961 * 7 6 4 35 35 H 1.09004 * 109.47113 * 210.00217 * 7 6 4 36 36 H 0.97001 * 119.99251 * 0.02562 * 8 7 6 37 37 H 0.97002 * 119.99745 * 359.97438 * 13 11 9 38 38 H 1.09004 * 109.46875 * 299.99418 * 14 13 11 39 39 H 1.09001 * 109.47445 * 59.99021 * 14 13 11 40 40 H 1.08993 * 109.46940 * 299.99120 * 15 14 13 41 41 H 1.08998 * 109.47387 * 60.00088 * 15 14 13 42 42 H 0.96999 * 120.00397 * 179.97438 * 19 18 16 43 43 H 1.09004 * 109.47244 * 90.00097 * 25 24 6 44 44 H 1.08996 * 109.47283 * 209.99744 * 25 24 6 45 45 H 1.08998 * 109.47313 * 329.99935 * 25 24 6 46 46 H 1.08009 * 120.00051 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2716 0.0001 0.0017 7 6 5.7787 0.0001 0.0028 8 7 6.2660 0.0008 1.3845 9 6 7.5909 0.0004 1.6317 10 8 8.3801 -0.0009 0.7100 11 6 8.0879 0.0005 3.0411 12 8 7.2986 0.0014 3.9629 13 7 9.4128 0.0007 3.2885 14 6 9.9001 0.0002 4.6700 15 6 11.4301 -0.0001 4.6712 16 6 11.9312 0.0000 6.0925 17 1 11.2288 0.0007 6.9128 18 6 13.2866 -0.0008 6.3455 19 7 14.1421 -0.0012 5.3466 20 14 13.9079 -0.0013 8.1071 21 1 14.0718 -1.4015 8.5738 22 1 15.2164 0.6980 8.1708 23 1 12.9294 0.6992 8.9773 24 6 3.5806 -1.1970 -0.0036 25 6 4.3341 -2.5021 -0.0087 26 6 2.1982 -1.1970 0.0005 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.6581 2.1325 -0.0004 31 1 4.5165 2.8170 -1.0264 32 1 3.7445 3.2620 0.5144 33 1 5.2860 2.3721 0.5157 34 1 6.1424 0.8899 -0.5112 35 1 6.1425 -0.8901 -0.5103 36 1 5.6350 0.0007 2.1212 37 1 10.0437 0.0004 2.5517 38 1 9.5362 0.8900 5.1839 39 1 9.5364 -0.8900 5.1833 40 1 11.7935 -0.8901 4.1576 41 1 11.7940 0.8899 4.1579 42 1 15.0956 -0.0013 5.5245 43 1 4.5152 -2.8210 1.0178 44 1 3.7453 -3.2596 -0.5259 45 1 5.2867 -2.3697 -0.5215 46 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117168246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:32 Heat of formation + Delta-G solvation = -92.474034 kcal Electronic energy + Delta-G solvation = -25497.685943 eV Core-core repulsion = 21771.330337 eV Total energy + Delta-G solvation = -3726.355606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.81680 -40.87695 -39.55677 -37.02755 -36.36897 -34.86784 -34.56000 -34.06338 -31.69856 -29.75724 -28.84700 -27.64959 -27.43001 -25.94462 -24.31544 -22.80409 -21.74723 -21.51889 -21.08083 -19.66264 -18.58529 -17.87039 -17.55189 -16.95246 -16.93100 -16.53295 -16.47523 -15.82726 -15.77019 -15.23441 -15.08734 -14.73427 -14.69534 -14.30870 -14.13317 -14.03239 -13.96865 -13.80500 -13.65343 -13.47752 -13.26237 -13.02034 -12.94484 -12.86649 -12.55451 -12.52968 -12.28545 -12.15296 -11.85053 -11.77719 -11.68819 -11.44179 -10.76430 -10.61621 -10.36497 -10.20240 -9.48930 -9.46947 -8.23392 -6.34604 0.19220 0.30757 0.42277 1.37642 1.43719 1.44254 1.55442 2.10768 2.39632 2.57814 2.87856 3.11451 3.43616 3.58267 3.77962 3.89316 3.95463 4.10085 4.35925 4.38534 4.44723 4.44911 4.54337 4.59898 4.66410 4.73198 4.75755 4.78248 4.80842 4.84994 4.92374 5.01793 5.05315 5.07438 5.11753 5.32807 5.33977 5.42169 5.53165 5.54806 5.63785 5.69820 5.75335 5.91414 6.08353 6.12835 6.33737 6.67811 6.79314 6.91330 7.34846 8.88535 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027939 B = 0.002005 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.936231 B =13958.794870 C =14009.756263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.073 4.073 3 C -0.140 4.140 4 C -0.062 4.062 5 C -0.122 4.122 6 C -0.134 4.134 7 C 0.159 3.841 8 N -0.680 5.680 9 C 0.516 3.484 10 O -0.539 6.539 11 C 0.500 3.500 12 O -0.549 6.549 13 N -0.688 5.688 14 C 0.138 3.862 15 C 0.018 3.982 16 C -0.545 4.545 17 H 0.065 0.935 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.264 1.264 24 C -0.062 4.062 25 C -0.123 4.123 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.417 0.583 37 H 0.415 0.585 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.265 0.735 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.170 -0.009 -14.695 31.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.158 4.158 4 C -0.062 4.062 5 C -0.178 4.178 6 C -0.135 4.135 7 C 0.038 3.962 8 N -0.333 5.333 9 C 0.296 3.704 10 O -0.417 6.417 11 C 0.281 3.719 12 O -0.428 6.428 13 N -0.339 5.339 14 C 0.015 3.985 15 C -0.019 4.019 16 C -0.583 4.583 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.567 5.567 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.063 4.063 25 C -0.179 4.179 26 C -0.158 4.158 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.156 0.844 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.253 0.747 37 H 0.251 0.749 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.087 0.913 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.972 -0.004 -14.744 31.620 hybrid contribution 0.836 -0.010 0.750 1.123 sum -27.136 -0.013 -13.994 30.532 Atomic orbital electron populations 1.20861 0.89372 1.03684 1.03213 1.20286 0.97467 0.92843 0.96731 1.21133 0.93113 0.98632 1.02918 1.19980 0.94278 0.94879 0.97113 1.20913 0.99863 0.93816 1.03228 1.19440 0.93599 0.93299 1.07145 1.20387 0.90364 1.03774 0.81724 1.45802 1.05497 1.71663 1.10330 1.19940 0.83891 0.77968 0.88600 1.90760 1.55787 1.49310 1.45815 1.20335 0.83503 0.78313 0.89764 1.90722 1.55541 1.50156 1.46404 1.46068 1.06469 1.70497 1.10877 1.21482 0.95812 1.01131 0.80061 1.19182 0.89215 0.96496 0.97038 1.21447 0.92386 1.51558 0.92911 0.91716 1.25924 0.97186 0.94444 1.01898 1.70076 1.02573 1.50935 1.33117 0.85400 0.77679 0.78491 0.79194 1.19791 1.20742 1.18787 1.19973 0.94277 0.94892 0.97112 1.20942 1.00240 0.93843 1.02864 1.21133 0.93124 0.98630 1.02917 0.90092 0.90708 0.90703 0.84417 0.89879 0.90197 0.92237 0.89914 0.89645 0.74651 0.74888 0.92046 0.92031 0.97365 0.97363 0.92576 0.91008 0.89857 0.91319 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 71.24 0.71 -0.24 16 2 C -0.07 -0.99 5.88 -19.87 -0.12 -1.11 16 3 C -0.14 -2.02 9.36 22.27 0.21 -1.81 16 4 C -0.06 -1.02 5.88 -19.87 -0.12 -1.13 16 5 C -0.12 -1.74 9.19 71.23 0.65 -1.09 16 6 C -0.13 -2.37 5.25 -19.87 -0.10 -2.47 16 7 C 0.16 3.10 4.59 85.63 0.39 3.49 16 8 N -0.68 -15.68 5.50 -468.13 -2.57 -18.26 16 9 C 0.52 15.20 7.89 87.27 0.69 15.88 16 10 O -0.54 -17.88 16.48 -3.23 -0.05 -17.93 16 11 C 0.50 17.17 7.89 87.27 0.69 17.86 16 12 O -0.55 -20.70 16.48 -3.25 -0.05 -20.75 16 13 N -0.69 -25.30 5.55 -464.40 -2.58 -27.88 16 14 C 0.14 5.82 5.61 86.38 0.48 6.30 16 15 C 0.02 0.92 5.09 29.85 0.15 1.07 16 16 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 17 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.00 0.24 5.46 84.65 0.46 0.70 16 19 N -0.93 -54.86 13.29 21.45 0.28 -54.58 16 20 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 24 C -0.06 -1.01 5.88 -19.87 -0.12 -1.13 16 25 C -0.12 -1.74 9.60 71.24 0.68 -1.06 16 26 C -0.14 -2.02 9.36 22.27 0.21 -1.82 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.07 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 33 H 0.06 1.00 6.66 -2.39 -0.02 0.99 16 34 H 0.08 1.62 6.70 -2.39 -0.02 1.60 16 35 H 0.09 1.66 5.94 -2.38 -0.01 1.64 16 36 H 0.42 9.28 7.94 -92.71 -0.74 8.54 16 37 H 0.41 14.66 7.94 -92.71 -0.74 13.93 16 38 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 43 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 45 H 0.07 1.02 5.94 -2.39 -0.01 1.01 16 46 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -66.12 386.83 1.71 -64.41 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.46 Total: 25.96 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.12 Total: 3.54 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.87 Total: -100.71 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.11 Total: -38.68 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -66.12 1.71 -64.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117168246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.064 kcal (2) G-P(sol) polarization free energy of solvation -66.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds