Wall clock time and date at job start Tue Mar 31 2020 12:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 N 1.46497 * 109.47046 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00364 * 180.02562 * 11 10 9 13 13 O 1.21359 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.49448 * 120.00342 * 180.02562 * 12 11 10 15 15 O 1.21348 * 119.99975 * 359.97438 * 14 12 11 16 16 N 1.34783 * 119.99806 * 179.97438 * 14 12 11 17 17 C 1.46497 * 119.99438 * 179.97438 * 16 14 12 18 18 C 1.53007 * 109.46833 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46916 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99322 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00604 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99375 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47490 * 60.00331 * 23 21 19 25 25 H 1.48507 * 109.47245 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47251 * 299.99960 * 23 21 19 27 27 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 28 28 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 29 29 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 30 30 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 32 32 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 34 34 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 35 35 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 36 36 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 37 37 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 38 38 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 39 39 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 40 40 H 0.96999 * 120.00344 * 0.02562 * 11 10 9 41 41 H 0.96995 * 120.00277 * 0.02562 * 16 14 12 42 42 H 1.08999 * 109.47916 * 300.00125 * 17 16 14 43 43 H 1.09000 * 109.47244 * 60.00582 * 17 16 14 44 44 H 1.08993 * 109.47138 * 300.00366 * 18 17 16 45 45 H 1.09000 * 109.46858 * 60.00189 * 18 17 16 46 46 H 0.97004 * 120.00228 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 7 0.4516 -4.2150 1.4262 12 6 0.1098 -4.8006 2.5910 13 8 0.4089 -4.2768 3.6441 14 6 -0.6374 -6.0949 2.5858 15 8 -0.9369 -6.6184 1.5328 16 7 -0.9787 -6.6806 3.7507 17 6 -1.7116 -7.9491 3.7456 18 6 -1.9725 -8.3932 5.1863 19 6 -2.7270 -9.6977 5.1810 20 1 -2.9935 -10.1636 4.2439 21 6 -3.0762 -10.2968 6.3728 22 7 -2.7513 -9.7298 7.5139 23 14 -4.0108 -11.9142 6.3662 24 1 -3.2062 -12.9482 5.6671 25 1 -4.2641 -12.3453 7.7646 26 1 -5.3058 -11.7348 5.6619 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5139 30 1 1.6581 2.1326 0.0004 31 1 4.1204 2.1326 0.0100 32 1 5.3516 0.0002 0.0096 33 1 4.5118 -2.8187 1.0287 34 1 3.7470 -3.2607 -0.5166 35 1 5.2885 -2.3708 -0.5089 36 1 0.4942 -2.3709 -0.5265 37 1 2.0358 -3.2608 -0.5225 38 1 2.1350 -3.0778 1.9484 39 1 0.5935 -2.1879 1.9444 40 1 0.2122 -4.6335 0.5845 41 1 -0.7397 -6.2620 4.5924 42 1 -2.6622 -7.8175 3.2286 43 1 -1.1210 -8.7079 3.2324 44 1 -1.0222 -8.5247 5.7036 45 1 -2.5633 -7.6342 5.6991 46 1 -2.9973 -10.1511 8.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117389217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:36 Heat of formation + Delta-G solvation = -73.033966 kcal Electronic energy + Delta-G solvation = -25153.769127 eV Core-core repulsion = 21428.256505 eV Total energy + Delta-G solvation = -3725.512621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56014 -40.09272 -38.29799 -35.99496 -35.01104 -33.95727 -33.34439 -32.81544 -29.92131 -29.69208 -27.56185 -27.00539 -25.74037 -24.29544 -22.68035 -21.15774 -21.04911 -20.97609 -20.08069 -18.25947 -16.93663 -16.71891 -16.48268 -16.16808 -15.79345 -15.48154 -14.88609 -14.77226 -14.69857 -14.50741 -14.19588 -13.75246 -13.55834 -13.45935 -13.28939 -13.24308 -13.07897 -12.88814 -12.44547 -12.31918 -12.28704 -11.86998 -11.68827 -11.53342 -11.24878 -11.18179 -11.11427 -11.04869 -10.68703 -10.39179 -9.80284 -9.45961 -9.36333 -9.21851 -8.92907 -8.88391 -8.69786 -8.41669 -6.10028 -4.13870 0.98002 1.02677 1.61412 2.53251 3.30544 3.34758 3.35738 3.37593 3.43074 3.86611 4.36341 4.39119 4.41009 4.56181 4.61546 4.63732 4.67392 4.79315 4.94330 4.99799 5.13338 5.19039 5.26679 5.27177 5.31515 5.36359 5.46199 5.49333 5.56356 5.64703 5.86646 5.88838 6.09083 6.16004 6.17817 6.20978 6.23558 6.33057 6.59245 6.68357 6.69076 7.04349 7.46492 7.57761 7.66534 7.86982 7.92579 8.21076 8.33808 8.91474 9.50936 11.01357 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.001809 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.921818 B =15472.390969 C =15578.490688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.074 4.074 7 C -0.122 4.122 8 C -0.084 4.084 9 C -0.098 4.098 10 C 0.124 3.876 11 N -0.707 5.707 12 C 0.507 3.493 13 O -0.519 6.519 14 C 0.497 3.503 15 O -0.534 6.534 16 N -0.686 5.686 17 C 0.118 3.882 18 C 0.011 3.989 19 C -0.524 4.524 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.413 0.587 41 H 0.411 0.589 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.025 0.975 45 H 0.025 0.975 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.769 21.993 -17.402 30.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.074 4.074 7 C -0.178 4.178 8 C -0.084 4.084 9 C -0.135 4.135 10 C 0.001 3.999 11 N -0.361 5.361 12 C 0.288 3.712 13 O -0.394 6.394 14 C 0.277 3.723 15 O -0.412 6.412 16 N -0.337 5.337 17 C -0.003 4.003 18 C -0.027 4.027 19 C -0.563 4.563 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.530 5.530 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.249 0.751 41 H 0.246 0.754 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.043 0.957 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.742 21.947 -17.160 30.635 hybrid contribution -0.405 -0.698 0.135 0.818 sum 12.337 21.249 -17.025 29.893 Atomic orbital electron populations 1.20900 0.91112 1.03274 1.02530 1.19787 0.96061 0.92524 0.98969 1.21008 0.94276 0.97426 1.01731 1.21121 0.94319 0.97974 0.99747 1.21003 0.99748 0.91945 1.01729 1.19784 0.93035 0.95570 0.98990 1.20915 0.99847 0.94271 1.02782 1.19304 0.92857 0.93863 1.02411 1.20854 1.01150 0.95059 0.96470 1.21384 0.97110 0.84814 0.96615 1.45753 1.57276 1.23927 1.09164 1.20463 0.80313 0.86145 0.84248 1.90768 1.53290 1.64523 1.30829 1.19972 0.81450 0.85571 0.85336 1.90726 1.54841 1.64808 1.30848 1.46238 1.54749 1.24650 1.08032 1.21938 0.94696 0.81468 1.02205 1.19356 0.97820 0.97008 0.88477 1.20973 1.36555 1.06026 0.92736 0.92211 1.25003 0.95918 0.97875 0.95481 1.69946 1.46388 1.39346 0.97362 0.86552 0.80333 0.83500 0.77005 1.20107 1.21233 1.20113 0.90963 0.91007 0.91355 0.86108 0.86131 0.86110 0.90792 0.90988 0.91489 0.89799 0.89591 0.90808 0.90818 0.75126 0.75374 0.91856 0.91851 0.95655 0.95656 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.19 36.00 0.33 -0.46 16 2 C -0.07 -0.58 5.88 -104.63 -0.62 -1.20 16 3 C -0.13 -0.95 9.70 -39.58 -0.38 -1.33 16 4 C -0.11 -0.82 10.05 -39.58 -0.40 -1.22 16 5 C -0.13 -0.95 9.70 -39.58 -0.38 -1.33 16 6 C -0.07 -0.59 5.88 -104.62 -0.62 -1.20 16 7 C -0.12 -0.78 9.61 36.01 0.35 -0.44 16 8 C -0.08 -0.68 5.13 -104.62 -0.54 -1.21 16 9 C -0.10 -0.70 4.36 -27.88 -0.12 -0.82 16 10 C 0.12 1.16 5.52 -4.05 -0.02 1.14 16 11 N -0.71 -7.82 5.55 -60.73 -0.34 -8.16 16 12 C 0.51 7.53 7.89 -11.58 -0.09 7.43 16 13 O -0.52 -8.82 16.48 5.49 0.09 -8.73 16 14 C 0.50 8.49 7.89 -11.58 -0.09 8.40 16 15 O -0.53 -9.95 16.48 5.50 0.09 -9.86 16 16 N -0.69 -12.49 5.55 -60.73 -0.34 -12.82 16 17 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 18 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 19 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 20 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 23 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.49 5.84 -51.93 -0.30 0.18 16 29 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 30 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.43 5.95 -51.93 -0.31 0.12 16 35 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.08 0.53 6.72 -51.93 -0.35 0.18 16 37 H 0.09 0.54 5.95 -51.93 -0.31 0.23 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.75 7.38 -51.93 -0.38 0.36 16 40 H 0.41 3.98 7.94 -40.82 -0.32 3.66 16 41 H 0.41 7.16 7.94 -40.82 -0.32 6.83 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 385.37 15.07 5.81 5.81 Total: -1.00 -31.96 385.37 -9.04 -41.00 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -6.91 Total: 4.71 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.16 Total: -2.81 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.06 Total: -46.33 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.18 Total: -18.59 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.96 -9.04 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117389217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.033 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds