Wall clock time and date at job start Tue Mar 31 2020 12:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38238 * 119.99519 * 2 1 4 4 C 1.38234 * 119.99675 * 179.72408 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28720 * 4 3 2 6 6 C 1.38237 * 119.99712 * 359.94731 * 5 4 3 7 7 C 1.50706 * 119.99744 * 180.02562 * 6 5 4 8 8 C 1.38228 * 120.00340 * 180.20275 * 2 1 3 9 9 C 1.50706 * 119.99981 * 0.02562 * 8 2 1 10 10 C 1.52995 * 109.47120 * 270.21556 * 9 8 2 11 11 N 1.46497 * 109.47046 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00364 * 180.02562 * 11 10 9 13 13 O 1.21359 * 119.99714 * 0.02562 * 12 11 10 14 14 C 1.49448 * 120.00342 * 180.02562 * 12 11 10 15 15 O 1.21348 * 119.99975 * 359.97438 * 14 12 11 16 16 N 1.34783 * 119.99806 * 179.97438 * 14 12 11 17 17 C 1.46497 * 119.99438 * 179.97438 * 16 14 12 18 18 C 1.53007 * 109.46833 * 180.02562 * 17 16 14 19 19 C 1.50701 * 109.46916 * 179.97438 * 18 17 16 20 20 H 1.07996 * 120.00385 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99322 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00604 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99375 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47490 * 60.00331 * 23 21 19 25 25 H 1.48507 * 109.47245 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47251 * 299.99960 * 23 21 19 27 27 H 1.09000 * 109.47366 * 89.99623 * 1 2 3 28 28 H 1.09000 * 109.46813 * 209.99281 * 1 2 3 29 29 H 1.09001 * 109.47363 * 329.99785 * 1 2 3 30 30 H 1.08002 * 120.00519 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 32 32 H 1.07996 * 120.00471 * 179.97438 * 5 4 3 33 33 H 1.08998 * 109.46845 * 90.00731 * 7 6 5 34 34 H 1.08998 * 109.46732 * 210.00157 * 7 6 5 35 35 H 1.08993 * 109.47519 * 330.00649 * 7 6 5 36 36 H 1.08998 * 109.46741 * 30.21633 * 9 8 2 37 37 H 1.09001 * 109.46713 * 150.22038 * 9 8 2 38 38 H 1.08997 * 109.47822 * 300.00318 * 10 9 8 39 39 H 1.09005 * 109.47224 * 59.99920 * 10 9 8 40 40 H 0.96999 * 120.00344 * 0.02562 * 11 10 9 41 41 H 0.96995 * 120.00277 * 0.02562 * 16 14 12 42 42 H 1.08999 * 109.47916 * 300.00125 * 17 16 14 43 43 H 1.09000 * 109.47244 * 60.00582 * 17 16 14 44 44 H 1.08993 * 109.47138 * 300.00366 * 18 17 16 45 45 H 1.09000 * 109.46858 * 60.00189 * 18 17 16 46 46 H 0.97004 * 120.00228 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5804 1.1973 0.0058 5 6 4.2717 0.0002 0.0055 6 6 3.5805 -1.1970 0.0006 7 6 4.3341 -2.5021 0.0010 8 6 2.1982 -1.1970 -0.0042 9 6 1.4447 -2.5022 -0.0094 10 6 1.1845 -2.9466 1.4312 11 7 0.4516 -4.2150 1.4262 12 6 0.1098 -4.8006 2.5910 13 8 0.4089 -4.2768 3.6441 14 6 -0.6374 -6.0949 2.5858 15 8 -0.9369 -6.6184 1.5328 16 7 -0.9787 -6.6806 3.7507 17 6 -1.7116 -7.9491 3.7456 18 6 -1.9725 -8.3932 5.1863 19 6 -2.7270 -9.6977 5.1810 20 1 -2.9935 -10.1636 4.2439 21 6 -3.0762 -10.2968 6.3728 22 7 -2.7513 -9.7298 7.5139 23 14 -4.0108 -11.9142 6.3662 24 1 -3.2062 -12.9482 5.6671 25 1 -4.2641 -12.3453 7.7646 26 1 -5.3058 -11.7348 5.6619 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3634 0.8900 0.5139 30 1 1.6581 2.1326 0.0004 31 1 4.1204 2.1326 0.0100 32 1 5.3516 0.0002 0.0096 33 1 4.5118 -2.8187 1.0287 34 1 3.7470 -3.2607 -0.5166 35 1 5.2885 -2.3708 -0.5089 36 1 0.4942 -2.3709 -0.5265 37 1 2.0358 -3.2608 -0.5225 38 1 2.1350 -3.0778 1.9484 39 1 0.5935 -2.1879 1.9444 40 1 0.2122 -4.6335 0.5845 41 1 -0.7397 -6.2620 4.5924 42 1 -2.6622 -7.8175 3.2286 43 1 -1.1210 -8.7079 3.2324 44 1 -1.0222 -8.5247 5.7036 45 1 -2.5633 -7.6342 5.6991 46 1 -2.9973 -10.1511 8.3523 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117389217.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:36 Heat of formation + Delta-G solvation = -93.122303 kcal Electronic energy + Delta-G solvation = -25154.640222 eV Core-core repulsion = 21428.256505 eV Total energy + Delta-G solvation = -3726.383717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72907 -40.78171 -39.61488 -37.10629 -36.47119 -34.85994 -34.47494 -34.02879 -31.69324 -30.48872 -28.24959 -27.51480 -27.29524 -25.57829 -23.84555 -22.77119 -21.84005 -21.57867 -21.22946 -19.55203 -18.57647 -17.90221 -17.44669 -17.01562 -16.94247 -16.60317 -16.46039 -16.11195 -15.92193 -15.37699 -15.06370 -14.97553 -14.65762 -14.29811 -14.28929 -14.04301 -13.82355 -13.79870 -13.58883 -13.26238 -13.08321 -12.92970 -12.89086 -12.84807 -12.54257 -12.41269 -12.26923 -12.25242 -11.73078 -11.68866 -11.65789 -11.45183 -10.71761 -10.60644 -10.37057 -10.19335 -9.50415 -9.42773 -8.22820 -6.34195 0.31560 0.41227 0.47496 1.31966 1.44143 1.46034 1.54190 2.11655 2.40253 2.66266 2.82187 3.12009 3.42337 3.82224 3.85214 3.95029 4.05847 4.06205 4.15795 4.39032 4.42174 4.44547 4.45742 4.52938 4.64126 4.76542 4.81576 4.82334 4.83647 4.90233 4.92920 5.00977 5.04285 5.08080 5.15755 5.34474 5.38200 5.42566 5.55197 5.62183 5.66939 5.75611 5.77457 5.92073 6.13208 6.15990 6.36115 6.70448 6.79987 6.92442 7.35284 8.88917 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.001809 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.921818 B =15472.390969 C =15578.490688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.120 4.120 5 C -0.139 4.139 6 C -0.086 4.086 7 C -0.121 4.121 8 C -0.098 4.098 9 C -0.088 4.088 10 C 0.127 3.873 11 N -0.685 5.685 12 C 0.514 3.486 13 O -0.543 6.543 14 C 0.501 3.499 15 O -0.547 6.547 16 N -0.689 5.689 17 C 0.138 3.862 18 C 0.018 3.982 19 C -0.545 4.545 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.968 3.032 24 H -0.267 1.267 25 H -0.284 1.284 26 H -0.267 1.267 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.422 0.578 41 H 0.414 0.586 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.007 0.993 45 H 0.007 0.993 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.881 22.183 -18.917 31.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.157 4.157 4 C -0.138 4.138 5 C -0.157 4.157 6 C -0.086 4.086 7 C -0.177 4.177 8 C -0.098 4.098 9 C -0.126 4.126 10 C 0.004 3.996 11 N -0.338 5.338 12 C 0.294 3.706 13 O -0.421 6.421 14 C 0.282 3.718 15 O -0.426 6.426 16 N -0.340 5.340 17 C 0.015 3.985 18 C -0.020 4.020 19 C -0.584 4.584 20 H 0.084 0.916 21 C -0.195 4.195 22 N -0.567 5.567 23 Si 0.792 3.208 24 H -0.192 1.192 25 H -0.209 1.209 26 H -0.192 1.192 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.260 0.740 41 H 0.250 0.750 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.866 22.160 -18.728 31.739 hybrid contribution -0.383 -0.657 0.557 0.943 sum 12.483 21.503 -18.171 30.796 Atomic orbital electron populations 1.20912 0.90325 1.03336 1.03118 1.20042 0.96847 0.92757 0.98936 1.21274 0.94688 0.97978 1.01727 1.21413 0.94502 0.98750 0.99149 1.21274 1.00644 0.92026 1.01717 1.20039 0.93288 0.96333 0.98949 1.20933 1.00312 0.93773 1.02730 1.19432 0.93126 0.94168 1.03089 1.20788 1.01874 0.95045 0.94853 1.21478 0.96338 0.83497 0.98275 1.45702 1.55798 1.23976 1.08362 1.19980 0.80368 0.85306 0.84953 1.90770 1.54586 1.64894 1.31832 1.20308 0.80917 0.86130 0.84491 1.90716 1.55309 1.65408 1.31168 1.46082 1.55012 1.24059 1.08884 1.21484 0.95006 0.82654 0.99342 1.19182 0.96259 0.95947 0.90579 1.21425 1.36748 1.07069 0.93143 0.91627 1.25928 0.96835 1.01612 0.95079 1.70070 1.47595 1.41073 0.98007 0.85452 0.79138 0.78995 0.77172 1.19171 1.20906 1.19181 0.90060 0.91391 0.90851 0.84776 0.84403 0.84779 0.91166 0.90502 0.90511 0.88730 0.88453 0.91309 0.91334 0.74000 0.74968 0.91944 0.91935 0.97439 0.97443 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.19 71.24 0.65 -0.75 16 2 C -0.09 -1.27 5.88 -19.87 -0.12 -1.38 16 3 C -0.14 -1.93 9.70 22.27 0.22 -1.71 16 4 C -0.12 -1.59 10.05 22.27 0.22 -1.37 16 5 C -0.14 -1.92 9.70 22.27 0.22 -1.71 16 6 C -0.09 -1.27 5.88 -19.86 -0.12 -1.39 16 7 C -0.12 -1.41 9.61 71.24 0.68 -0.72 16 8 C -0.10 -1.46 5.13 -19.87 -0.10 -1.56 16 9 C -0.09 -1.11 4.36 29.85 0.13 -0.98 16 10 C 0.13 2.21 5.52 86.38 0.48 2.69 16 11 N -0.68 -14.14 5.55 -464.41 -2.58 -16.72 16 12 C 0.51 14.78 7.89 87.27 0.69 15.47 16 13 O -0.54 -18.23 16.48 -3.27 -0.05 -18.28 16 14 C 0.50 16.73 7.89 87.27 0.69 17.42 16 15 O -0.55 -19.74 16.48 -3.24 -0.05 -19.80 16 16 N -0.69 -25.06 5.55 -464.40 -2.58 -27.63 16 17 C 0.14 5.75 5.61 86.38 0.48 6.23 16 18 C 0.02 0.90 5.09 29.85 0.15 1.05 16 19 C -0.55 -30.04 9.11 25.60 0.23 -29.81 16 20 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.00 0.24 5.46 84.66 0.46 0.70 16 22 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 23 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.83 5.84 -2.39 -0.01 0.82 16 29 H 0.07 0.76 8.09 -2.39 -0.02 0.74 16 30 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.79 5.95 -2.39 -0.01 0.77 16 35 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 36 H 0.09 1.00 6.72 -2.39 -0.02 0.98 16 37 H 0.10 1.01 5.95 -2.39 -0.01 0.99 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 1.32 7.38 -2.38 -0.02 1.30 16 40 H 0.42 7.30 7.94 -92.71 -0.74 6.57 16 41 H 0.41 14.60 7.94 -92.71 -0.74 13.86 16 42 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -67.41 385.37 1.56 -65.85 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: -0.47 Total: 23.69 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 4.97 Total: 2.17 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -4.87 Total: -98.92 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.11 Total: -38.08 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.41 1.56 -65.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117389217.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.272 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds