Wall clock time and date at job start Tue Mar 31 2020 12:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99830 * 2 1 4 4 H 1.48502 * 109.47396 * 91.93712 * 3 2 1 5 5 H 1.48510 * 109.46947 * 211.93580 * 3 2 1 6 6 H 1.48500 * 109.47387 * 331.92899 * 3 2 1 7 7 C 1.37876 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99465 * 20.84846 * 7 2 1 9 9 C 1.50698 * 120.00363 * 200.85320 * 7 2 1 10 10 C 1.53008 * 115.54858 * 33.51759 * 9 7 2 11 11 O 1.45192 * 109.46796 * 174.58579 * 10 9 7 12 12 C 1.34764 * 116.99721 * 184.90407 * 11 10 9 13 13 O 1.21522 * 120.00055 * 5.08488 * 12 11 10 14 14 C 1.47284 * 119.99878 * 185.07905 * 12 11 10 15 15 C 1.38126 * 126.42725 * 5.04788 * 14 12 11 16 16 N 1.34225 * 107.40708 * 179.83223 * 15 14 12 17 17 H 0.96996 * 125.74246 * 180.13518 * 16 15 14 18 18 N 1.39933 * 108.51479 * 0.42550 * 16 15 14 19 19 C 1.30438 * 108.91450 * 359.72867 * 18 16 15 20 20 C 1.50697 * 125.98899 * 179.97438 * 19 18 16 21 21 C 1.53004 * 109.46768 * 60.00416 * 20 19 18 22 22 C 1.53004 * 109.46813 * 179.97438 * 21 20 19 23 23 C 1.53010 * 109.46930 * 60.00006 * 22 21 20 24 24 C 1.52997 * 109.46915 * 299.99694 * 23 22 21 25 25 C 1.52996 * 109.47322 * 300.00340 * 20 19 18 26 26 C 1.52997 * 117.49972 * 247.84970 * 9 7 2 27 27 C 1.52994 * 117.49936 * 179.18654 * 9 7 2 28 28 H 0.97001 * 119.99896 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46744 * 294.58400 * 10 9 7 30 30 H 1.08997 * 109.46744 * 54.58507 * 10 9 7 31 31 H 1.08000 * 126.29451 * 359.95311 * 15 14 12 32 32 H 1.09000 * 109.46771 * 179.97438 * 20 19 18 33 33 H 1.08999 * 109.47279 * 299.99193 * 21 20 19 34 34 H 1.09003 * 109.47205 * 60.00211 * 21 20 19 35 35 H 1.08998 * 109.47370 * 300.00076 * 22 21 20 36 36 H 1.08996 * 109.47077 * 180.02562 * 22 21 20 37 37 H 1.09003 * 109.46917 * 179.97438 * 23 22 21 38 38 H 1.08998 * 109.47037 * 59.99865 * 23 22 21 39 39 H 1.08998 * 109.47408 * 299.99945 * 24 23 22 40 40 H 1.09002 * 109.47043 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46947 * 299.99562 * 25 20 19 42 42 H 1.08999 * 109.47540 * 60.00307 * 25 20 19 43 43 H 1.09006 * 117.49618 * 359.97438 * 26 9 7 44 44 H 1.08994 * 117.50185 * 145.01536 * 26 9 7 45 45 H 1.08998 * 117.50029 * 214.97809 * 27 9 7 46 46 H 1.09001 * 117.49881 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5377 2.0228 1.3993 5 1 3.5257 1.4523 -0.7407 6 1 1.4268 2.6641 -0.6588 7 6 2.0046 -1.1940 0.0005 8 1 1.5176 -2.0989 -0.3320 9 6 3.4376 -1.2366 0.4651 10 6 3.7974 -0.2584 1.5853 11 8 5.1631 -0.4975 2.0163 12 6 5.6054 0.2152 3.0711 13 8 4.8436 0.9459 3.6731 14 6 7.0122 0.1085 3.4942 15 6 8.0100 -0.5995 2.8531 16 7 9.1384 -0.4331 3.5607 17 1 10.0037 -0.8149 3.3453 18 7 8.8550 0.3784 4.6649 19 6 7.5929 0.7066 4.6355 20 6 6.8792 1.5714 5.6424 21 6 7.5315 2.9548 5.6799 22 6 6.8065 3.8330 6.7017 23 6 6.8993 3.1876 8.0859 24 6 6.2469 1.8042 8.0483 25 6 6.9725 0.9258 7.0263 26 6 4.5113 -1.5367 -0.5827 27 6 4.1418 -2.5948 0.4600 28 1 -0.4850 0.8401 -0.0004 29 1 3.7059 0.7638 1.2183 30 1 3.1200 -0.4045 2.4266 31 1 7.9025 -1.1787 1.9480 32 1 5.8318 1.6715 5.3576 33 1 8.5790 2.8550 5.9644 34 1 7.4650 3.4148 4.6939 35 1 5.7591 3.9328 6.4168 36 1 7.2709 4.8187 6.7281 37 1 6.3831 3.8135 8.8139 38 1 7.9466 3.0878 8.3707 39 1 5.1996 1.9040 7.7634 40 1 6.3126 1.3446 9.0344 41 1 6.5077 -0.0598 6.9996 42 1 8.0199 0.8260 7.3109 43 1 4.1812 -1.7037 -1.6080 44 1 5.4741 -1.0376 -0.4738 45 1 4.8618 -2.7914 1.2543 46 1 3.5686 -3.4577 0.1209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118389870.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:55 Heat of formation + Delta-G solvation = -5.019992 kcal Electronic energy + Delta-G solvation = -27211.967375 eV Core-core repulsion = 23489.404061 eV Total energy + Delta-G solvation = -3722.563314 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.64808 -39.58414 -38.42741 -37.03357 -35.19884 -33.02521 -32.30470 -30.81990 -30.76938 -29.73407 -27.62548 -25.37387 -23.67855 -23.25714 -22.64313 -21.38470 -20.96700 -19.80791 -19.36210 -19.13385 -18.33180 -16.95944 -16.66216 -15.98358 -15.68718 -15.38124 -14.94171 -14.59263 -14.41677 -14.21134 -14.17671 -13.90888 -13.60343 -13.13668 -12.81160 -12.63052 -12.54713 -12.27824 -12.27025 -11.73590 -11.40882 -11.19195 -11.15127 -11.08506 -10.80852 -10.65583 -10.44886 -10.39907 -10.38490 -10.33226 -10.03977 -9.85986 -9.60851 -9.50883 -9.23251 -9.00358 -8.65960 -8.32931 -6.29672 -4.17737 1.32633 1.96581 2.45879 3.19382 3.22781 3.35041 3.36220 3.38788 4.26145 4.29552 4.46426 4.70308 4.70604 4.71173 4.81602 5.00623 5.21048 5.26908 5.32901 5.33189 5.42625 5.46047 5.46254 5.52973 5.60014 5.72194 5.74076 5.87493 5.93869 5.99595 6.04694 6.08809 6.09151 6.15095 6.22478 6.24243 6.28141 6.44991 6.54688 6.59074 6.74190 6.88520 6.99477 7.06689 7.21175 7.36234 7.63459 8.22628 8.40317 8.79286 9.36612 10.82216 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014793 B = 0.003901 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.341264 B = 7175.351230 C = 8335.555660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.268 1.268 5 H -0.260 1.260 6 H -0.290 1.290 7 C -0.491 4.491 8 H 0.084 0.916 9 C 0.008 3.992 10 C 0.095 3.905 11 O -0.353 6.353 12 C 0.534 3.466 13 O -0.513 6.513 14 C -0.272 4.272 15 C 0.133 3.867 16 N -0.464 5.464 17 H 0.445 0.555 18 N -0.296 5.296 19 C 0.148 3.852 20 C -0.025 4.025 21 C -0.105 4.105 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.106 4.106 26 C -0.202 4.202 27 C -0.179 4.179 28 H 0.269 0.731 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.196 0.804 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.080 2.551 11.540 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.122 4.122 3 Si 0.690 3.310 4 H -0.195 1.195 5 H -0.185 1.185 6 H -0.217 1.217 7 C -0.527 4.527 8 H 0.102 0.898 9 C 0.007 3.993 10 C 0.023 3.977 11 O -0.270 6.270 12 C 0.378 3.622 13 O -0.402 6.402 14 C -0.285 4.285 15 C -0.020 4.020 16 N -0.168 5.168 17 H 0.289 0.711 18 N -0.117 5.117 19 C -0.020 4.020 20 C -0.046 4.046 21 C -0.144 4.144 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.144 4.144 26 C -0.240 4.240 27 C -0.216 4.216 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.213 0.787 32 H 0.136 0.864 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 19.712 2.967 12.313 23.431 hybrid contribution 0.047 0.531 -0.837 0.992 sum 19.760 3.498 11.476 23.117 Atomic orbital electron populations 1.69984 1.06484 1.27682 1.46676 1.24957 0.94474 0.98981 0.93797 0.87296 0.80730 0.84085 0.78881 1.19454 1.18516 1.21681 1.20219 0.91734 0.96347 1.44442 0.89758 1.19362 0.93756 0.93077 0.93103 1.23343 0.76990 0.99533 0.97829 1.86480 1.34438 1.60707 1.45356 1.19985 0.86740 0.77157 0.78315 1.90763 1.56853 1.38025 1.54592 1.19516 0.92913 1.13580 1.02474 1.23378 0.85702 0.96005 0.96943 1.46135 1.10782 1.39977 1.19892 0.71066 1.77128 1.15985 1.12878 1.05708 1.22425 0.90240 0.95229 0.94134 1.20094 1.00965 0.92171 0.91336 1.21506 0.99527 0.93906 0.99412 1.21537 1.01226 0.98209 0.94748 1.21540 1.00785 0.96315 0.96982 1.21541 1.00124 0.95351 0.98687 1.21523 1.01035 0.98636 0.93210 1.23113 1.00067 1.05009 0.95837 1.22731 1.03789 0.93436 1.01679 0.92107 0.92065 0.90361 0.78714 0.86422 0.91620 0.91974 0.91495 0.91965 0.92126 0.92122 0.91494 0.91934 0.91936 0.91600 0.89854 0.91065 0.90354 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.96 55.43 0.77 -25.11 16 2 C 0.08 2.35 5.35 -17.82 -0.10 2.25 16 3 Si 0.86 21.50 24.41 -169.99 -4.15 17.35 16 4 H -0.27 -6.68 6.60 56.52 0.37 -6.31 16 5 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.49 -13.58 9.52 -34.44 -0.33 -13.90 16 8 H 0.08 2.49 8.06 -52.48 -0.42 2.06 16 9 C 0.01 0.19 1.84 -155.66 -0.29 -0.10 16 10 C 0.10 2.19 4.47 37.16 0.17 2.35 16 11 O -0.35 -6.92 8.32 -40.67 -0.34 -7.26 16 12 C 0.53 9.94 7.94 34.41 0.27 10.21 16 13 O -0.51 -10.78 14.29 -19.28 -0.28 -11.06 16 14 C -0.27 -4.04 6.12 -105.08 -0.64 -4.68 16 15 C 0.13 1.43 11.86 -16.55 -0.20 1.24 16 16 N -0.46 -4.33 7.28 30.86 0.22 -4.10 16 17 H 0.44 2.33 8.96 -182.73 -1.64 0.69 16 18 N -0.30 -3.67 12.63 33.90 0.43 -3.25 16 19 C 0.15 2.06 5.77 -82.01 -0.47 1.59 16 20 C -0.03 -0.33 2.53 -91.77 -0.23 -0.57 16 21 C -0.11 -1.22 5.19 -26.73 -0.14 -1.35 16 22 C -0.12 -1.20 5.92 -26.72 -0.16 -1.36 16 23 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 24 C -0.12 -1.18 5.92 -26.71 -0.16 -1.34 16 25 C -0.11 -1.20 5.19 -26.71 -0.14 -1.34 16 26 C -0.20 -4.19 9.67 -26.69 -0.26 -4.45 16 27 C -0.18 -3.63 9.63 -26.70 -0.26 -3.88 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.06 1.49 2.99 -51.93 -0.16 1.33 16 30 H 0.08 1.87 7.97 -51.93 -0.41 1.46 16 31 H 0.20 1.55 8.06 -52.49 -0.42 1.13 16 32 H 0.12 1.83 5.63 -51.93 -0.29 1.54 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.07 1.35 7.83 -51.93 -0.41 0.94 16 45 H 0.08 1.44 7.49 -51.93 -0.39 1.05 16 46 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -32.07 367.55 -9.26 -41.33 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -8.38 Total: 3.13 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -3.08 Total: -16.57 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 1.43 Total: -32.46 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.61 Total: -18.32 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.07 -9.26 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118389870.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.306 kcal (2) G-P(sol) polarization free energy of solvation -32.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds